mRNA_H-paniculata_contig2220.5895.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: D8LJZ1_ECTSI (Oxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ1_ECTSI) HSP 1 Score: 227 bits (578), Expect = 5.200e-63 Identity = 125/310 (40.32%), Postives = 186/310 (60.00%), Query Frame = 3
Query: 519 AVDGVTSAAXSAAGTAQQAQPMIEASVPSAVELGLY-PVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIP-VVPKEPPPGADGKELTWMAVLGAPNPFKAHKMMLDQQAANSHSIVGGG 1442
A+ G AA +AAGTA QAQ +E + P ++ LY P ++AM +D + +TTGMPYW +IV ITV +R+A+LP+ ++ RN AR MKPE D L+ A++ D + RK RYR E+KALFQK+ L P+VQ+P F+ F+ LRRM + P +A+GG WFQDLGA DPY + P ++ + + M E G +G S ++ MRG+ LL+ P+T+ + G F+YW TSN +S++Q++ K +K F P + P + KE+ W+ VLG +P K ++ M DQ+ + + G G
Sbjct: 23 AMAGGADAAMAAAGTADQAQAALEVA-PETFKMALYTPPQVAMMAVDYVHATTGMPYWMTIVAITVGIRTAILPIGLLAARNGARTAAMKPEMDELQAAIKGDQQSSQPRKADRYRQETKALFQKHKASLVMNAALPIVQLPLFIGFFLGLRRMPDVVPEFATGGVLWFQDLGAPDPYMIFPVMTGVMMMAMAELGGEGGALAGSSVKMKAGMRGMALLVTPLTMYVSTGVFVYWTTSNFYSILQTLAFKSSGIKKFFDFPDLPPNKLKSNTAEKEIGWLDVLGGDHPIKEYRKMQDQREVQAWFVEGEG 331
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A6H5J862_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J862_9PHAE) HSP 1 Score: 227 bits (579), Expect = 2.440e-61 Identity = 124/310 (40.00%), Postives = 187/310 (60.32%), Query Frame = 3
Query: 519 AVDGVTSAAXSAAGTAQQAQPMIEASVPSAVELGLY-PVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIP-VVPKEPPPGADGKELTWMAVLGAPNPFKAHKMMLDQQAANSHSIVGGG 1442
A+ G AA +AAGTA+QAQ ++ + P ++ LY P ++AM +D + +TTGMPYW +I+ ITV +R+A+LP+ ++ RN AR MKPE DAL+ A++ D + RK RYR E+KALFQK+ L P+VQ+P F+ F+ LRRM + P +A+GG WFQDLGA DPY + P ++ + + M E G +G S ++ MRG+ LL+ P+T+ + G F+YW TSN +S++Q++ K +K F P + P + KE+ W VLG +P K ++ M DQ+ + + G G
Sbjct: 198 AMAGSADAAMAAAGTAEQAQATLDVA-PETFKMALYTPPQLAMMAVDYVHATTGMPYWMTIIAITVGIRTAILPIGLLAARNGARTAAMKPEMDALQAAIKGDQQSSQPRKADRYRQETKALFQKHKASLVMNAALPIVQLPLFIGFFLGLRRMPDVVPEFATGGVLWFQDLGAPDPYMIFPVMTGVMMMAMAELGGEGGALAGSSVKMKAGMRGMALLVTPLTMYVSTGVFVYWTTSNFYSILQTLAFKSSAIKKFFDFPDLPPNKLKRDTAEKEIGWFDVLGGDHPIKEYRKMQDQREVQAWFVEGEG 506
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A7S2RKG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKG9_9STRA) HSP 1 Score: 182 bits (463), Expect = 1.940e-47 Identity = 98/255 (38.43%), Postives = 154/255 (60.39%), Query Frame = 3
Query: 552 AAGTAQQAQPMIEASVPSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVVPKEP 1316
AAG A A+V +A +LG +P + MQ ID I +T+GMP+W +I+ +T+ LR AMLP+ + T +N+ RM +KPE + + E ++ D + ++ Y + +ALFQKYD R + +Q+P FMSF+F L+ M + +P GG WF DL AADP + P ++ SF+ M+E G+DGM++ + ++ MRG+ LL++P T +P F YW +N S+ Q++ LK+P+ R FG+P P+ P
Sbjct: 32 AAGAGDSAAGGAAAAVDAAAQLGYWPSHMVMQGIDLIHTTSGMPFWMTIMAVTISLRVAMLPVLLSTIKNARRMTQLKPELEIISERIKADPKSNDPQRQQMYSKQLQALFQKYDAHPIRSFYGIGIQLPVFMSFFFGLKSMGDFYPEIQQGGTLWFTDLAAADPTFIFPVVTTASFIFMIELGADGMDANQQA-TMKNVMRGLGLLMLPFTYQMPCAVFCYWSAANFMSVCQTLALKVPSVRDYFGVPPPPQPP 285
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A482SHT9_9ARCH (YidC/Oxa1 family membrane protein insertase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHT9_9ARCH) HSP 1 Score: 181 bits (460), Expect = 3.990e-47 Identity = 100/253 (39.53%), Postives = 153/253 (60.47%), Query Frame = 3
Query: 624 YPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVVPKEPPPGADGKELTWMAVLGAPNPFK 1382
Y V M+ ID + + G+PYW +IV TV LR +LP+ + TT++SAR+ + +PE ++EA+ +D T +R L+Y+ E A+ K+ V R L +P+ Q P F++F+ ALR M FP + +GG WF +L A D + LP +++SFLLM+E G+DGM + + R MRG+ + +VP+T ++P G F+YW+T+N FSLVQ+++LK + RK+ IP +P E P L NPFK
Sbjct: 90 YVVGTVMKFIDYVHTLAGVPYWEAIVFTTVGLRFLLLPVVLKTTQSSARLAVARPEMQKVQEAMAKDTNTADSRVQLKYQKEMSAVLSKHKVNPVRALLWPVCQFPIFIAFFMALRDMGTYFPGFLTGGDFWFTNLSAPDSFYYLPIANSVSFLLMIELGADGMPTQQQA-TFRWVMRGLAVALVPLTSSMPQGLFVYWVTNNVFSLVQTMILKQESVRKALDIPKIPTENTPN-----------LKVVNPFK 330
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A067C4W9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C4W9_SAPPC) HSP 1 Score: 174 bits (441), Expect = 1.530e-44 Identity = 90/235 (38.30%), Postives = 144/235 (61.28%), Query Frame = 3
Query: 600 PSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVV 1304
P+ E+G EIA++V+D TTG+P+WA+I+ TV +RS P++V++ RNSARM +MKP+ + L+E ++ +K +RA +K LF++++V+ PL Q+P F+ F++ L+ +S P YA G WFQDL A DP LP +S+ + +E G DG+ +S ++ MR V L++VP+ +G +YW+TSN F+L Q+++LK+P R + GIP V
Sbjct: 79 PATAEMGYSLAEIAVRVLDVAHVTTGLPWWATIIATTVAVRSVFFPISVMSMRNSARMNIMKPKLEKLQEEIKSSQEAYDPKKMAEFRARAKNLFKEHEVRPFMSFLMPLSQLPIFLGFFWGLQEISTHIPEYAGEGTLWFQDLAAPDPLYALPVISSALMIASMEAGGDGLPKEYLS-QAKMGMRMVALIMVPVATTFQSGILVYWVTSNCFTLTQTMLLKVPAVRSALGIPSV 312
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A024U946_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U946_9STRA) HSP 1 Score: 171 bits (432), Expect = 3.380e-43 Identity = 92/265 (34.72%), Postives = 162/265 (61.13%), Query Frame = 3
Query: 591 ASVPSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVVPKEPPPGADGKELTWMAVLGAPNPFKA 1385
A P V++G E+A++ +D + + +G+P+WA+I+ TV++RSA P+++++ +NSARMG+++P+ + L+ ++ K +RA ++ALF+++ V+ P+ Q+P F+ F++ L+ +S+ P YA+ GA WF++L A DP LP +S+ + LE G +GM + ++ MR V L+++P+ IN +G +YW+TSN F+L Q++VLK+P + + GIP P PPP L +V P+PF+A
Sbjct: 79 AVAPVTVDMGYSLAEMAIRTMDVVHAMSGLPWWATIIATTVIVRSAFFPISIMSMKNSARMGILQPKLEKLQNEIKNSPDAYDPAKMTEFRARAQALFKEHKVRPFMSFLMPISQLPIFLGFFWGLQDISKYIPGYATDGAFWFENLAAPDPTYALPVISSALMVASLEAGGEGMPPEYID-KAKMGMRAVALIMIPVAINFESGILLYWVTSNIFTLTQTLVLKIPGLKAALGIPS-PVAPPP------LMTASVSKFPSPFQA 335
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A1V9ZCP9_9STRA (Mitochondrial inner membrane protein OXA1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCP9_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.330e-42 Identity = 87/233 (37.34%), Postives = 145/233 (62.23%), Query Frame = 3
Query: 600 PSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIP 1298
P+ E+G EIA++V+D + +TTG+P+WA+IV TV +RS P++V++ +NSARM +MKP+ D L+E + +K +RA ++ LF+++ V+ PL Q+P F+ F++ L+ +++ P YA+ G WF++L DP LP LS+ + +E G +GM +S ++ MR V L++VP+ +G +YW+TSNTF+L Q+++LK+P R + GIP
Sbjct: 83 PATAEMGYSLAEIAVRVLDVVHATTGLPWWATIVASTVAVRSMFFPISVMSMKNSARMNIMKPKLDKLQEEIRNAQDAHDPKKMAEFRARAQNLFKEHQVRPFLSFLMPLSQLPIFLGFFWGLQEITKFIPDYATDGTLWFENLAEPDPTYALPILSSALMIASMEAGGEGMPKEYLS-QAKMGMRLVALIMVPVATTFQSGVLVYWVTSNTFTLTQTLLLKVPAIRSALGIP 314
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A1V9YQZ6_9STRA (Mitochondrial inner membrane protein OXA1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQZ6_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.430e-42 Identity = 91/247 (36.84%), Postives = 148/247 (59.92%), Query Frame = 3
Query: 600 PSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPA------------GTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVV 1304
P+ E+G EIA++V+DG+ TTG+P+WA+I+ TV +RSA P++V++ RNSARM +MKP+ + L++ + +K +RA ++ LF+++ V+ PL Q+P F+ F++ L+ +S P+YAS GA WFQ+L + DP LP LS+ + +E G DG+ +S ++ MR V L++VP+ + G +YW+TSN F+L Q+++LK+P R + GIP V
Sbjct: 61 PATAEMGYSLAEIAIRVMDGVHMTTGLPWWATIIATTVAVRSAFFPISVMSMRNSARMNIMKPKLEKLQDEIRASQEAYDPKKMAEFRARAQNLFKEHQVRPFLSFLMPLSQLPIFLGFFWGLQEISTFIPSYASDGALWFQELASPDPLYALPVLSSALMIASMEAGGDGLPKEYVS-QAKMGMRMVALIMVPVATTFQSVAKASMELRALQGILVYWVTSNCFTLTQTMLLKVPAVRSALGIPSV 306
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: W4FLF9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLF9_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.610e-42 Identity = 90/262 (34.35%), Postives = 160/262 (61.07%), Query Frame = 3
Query: 600 PSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVVPKEPPPGADGKELTWMAVLGAPNPFKA 1385
P E+G EIA++ +D + +T+G+P+WA+I+ T+++RSA P+++++ RNSARMG+++P+ L++ ++ K +RA ++ALF+++ V+ P+ Q+P F+ F++ L+ +++ P YA+ GA WF++L A DP LP LS+ + LE G +GM + + ++ MR V L+++P+ +N +G +YW++SN F+L Q++VLK+P +K IP P PPP L + P+PF+A
Sbjct: 85 PVTAEMGYSLAEIAIRTLDVVHATSGLPWWATIIATTIVVRSAFFPISIMSMRNSARMGILQPKLQKLQDEIKSSPDAYDPAKMTEFRARAQALFKEHKVRPFMSFLMPISQLPIFLGFFWGLQDIAKYIPGYAADGAFWFENLAAPDPTYALPVLSSALMVASLEAGGEGMPAEYID-KAKMGMRIVALIMIPVAVNFESGILLYWVSSNIFTLTQTLVLKIPGVKKLLDIPT-PVTPPP------LATTNLSSFPSPFQA 338
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A6A3UNJ7_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UNJ7_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.580e-40 Identity = 93/254 (36.61%), Postives = 154/254 (60.63%), Query Frame = 3
Query: 552 AAGTAQQAQPMIEAS----VPSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPV 1301
AA A+ A +EA+ S +LG ++A++ +D I STTG+P+WA+I+ TV +R+ P+ VV+ RN+A+M L +P+ + LK ++ N T ++ ++ + KAL +K+ V + + P+ QIP F+ F++ L+ +S+ FP YA G W DL AADPY VLP LS+ + +E G D M +G M ++ MR ++VP+T+N +G F+YW+TSN F++ QS +L++ +++ IPV
Sbjct: 71 AASPAEVADQALEAASTIDYASVSDLGFGLSDLAIRSLDVIHSTTGLPWWATIIATTVAVRTVFFPITVVSMRNAAKMKLFQPDMEKLKAEID-SNPTQNSETAQEFQKKYKALMKKHGVNPFKSVLTPMSQIPVFLGFFWGLQDISKYFPEYAHEGIGWVSDLSAADPYMVLPILSSALMIASVELGGDAM-AGEMKDKLKFGMRFFAAIMVPLTMNFQSGIFVYWVTSNAFTVAQSALLRVNLIKRALNIPV 322 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2220.5895.1 >prot_H-paniculata_contig2220.5895.1 ID=prot_H-paniculata_contig2220.5895.1|Name=mRNA_H-paniculata_contig2220.5895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=538bp MLRAGQSSAARAVFYRAGAAHEGRSARFSVFARASSATRHSVPNNFNNASback to top mRNA from alignment at H-paniculata_contig2220:9260..20201- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2220.5895.1 ID=mRNA_H-paniculata_contig2220.5895.1|Name=mRNA_H-paniculata_contig2220.5895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10942bp|location=Sequence derived from alignment at H-paniculata_contig2220:9260..20201- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2220:9260..20201- >mRNA_H-paniculata_contig2220.5895.1 ID=mRNA_H-paniculata_contig2220.5895.1|Name=mRNA_H-paniculata_contig2220.5895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3228bp|location=Sequence derived from alignment at H-paniculata_contig2220:9260..20201- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |