prot_H-paniculata_contig2220.5894.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2220.5894.1
Unique Nameprot_H-paniculata_contig2220.5894.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length101
Homology
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BLAST of mRNA_H-paniculata_contig2220.5894.1 vs. uniprot
Match: D8LJZ2_ECTSI (Polyphosphate kinase 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ2_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 5.090e-25
Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = 0 
Query:    2 GWHVFVKGISISTTFTDLAQRFAAFGDVNGLKAIFNQVACKTERSGSRASGQ------AVVMASAGVAFISFDNEEGMLKAVEGMNDQVVDGNVLKV 92
            G++V V G+S STTFT LA+RFAAFGDVNG K IFN+V+C  E +  R   +      AVV AS+G AFISFDNE GM KAVE M+ Q +DGN+LKV
Sbjct:  266 GFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKV 362
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BLAST of mRNA_H-paniculata_contig2220.5894.1 vs. uniprot
Match: A0A6H5JE04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE04_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.600e-24
Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = 0 
Query:    2 GWHVFVKGISISTTFTDLAQRFAAFGDVNGLKAIFNQVACKTERSGSRASGQ------AVVMASAGVAFISFDNEEGMLKAVEGMNDQVVDGNVLKV 92
            G++V V G+S STTFT LA+RFAAFGDVNG K IFN+V+C  E +  R   +      AVV AS+G AFISFD E GM KAVE M+ Q +DGN+LKV
Sbjct:  593 GFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDKERGMEKAVECMDGQKLDGNILKV 689
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2220.5894.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJZ2_ECTSI5.090e-2559.79Polyphosphate kinase 2 family protein n=1 Tax=Ecto... [more]
A0A6H5JE04_9PHAE3.600e-2458.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 4..93
e-value: 8.2E-7
score: 38.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 59..91
e-value: 7.7E-6
score: 25.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 3..97
score: 12.185
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..100
e-value: 2.3E-13
score: 52.4
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2220contigH-paniculata_contig2220:6670..6972 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2220.5894.1mRNA_H-paniculata_contig2220.5894.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2220 6670..6972 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2220.5894.1 ID=prot_H-paniculata_contig2220.5894.1|Name=mRNA_H-paniculata_contig2220.5894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MGWHVFVKGISISTTFTDLAQRFAAFGDVNGLKAIFNQVACKTERSGSRA
SGQAVVMASAGVAFISFDNEEGMLKAVEGMNDQVVDGNVLKVRGKQRHHT
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf