mRNA_H-paniculata_contig2220.5894.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2220.5894.1
Unique NamemRNA_H-paniculata_contig2220.5894.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2220.5894.1 vs. uniprot
Match: D8LJZ2_ECTSI (Polyphosphate kinase 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ2_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 5.090e-25
Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    4 GWHVFVKGISISTTFTDLAQRFAAFGDVNGLKAIFNQVACKTERSGSRASGQ------AVVMASAGVAFISFDNEEGMLKAVEGMNDQVVDGNVLKV 276
            G++V V G+S STTFT LA+RFAAFGDVNG K IFN+V+C  E +  R   +      AVV AS+G AFISFDNE GM KAVE M+ Q +DGN+LKV
Sbjct:  266 GFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKV 362
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BLAST of mRNA_H-paniculata_contig2220.5894.1 vs. uniprot
Match: A0A6H5JE04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE04_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.600e-24
Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:    4 GWHVFVKGISISTTFTDLAQRFAAFGDVNGLKAIFNQVACKTERSGSRASGQ------AVVMASAGVAFISFDNEEGMLKAVEGMNDQVVDGNVLKV 276
            G++V V G+S STTFT LA+RFAAFGDVNG K IFN+V+C  E +  R   +      AVV AS+G AFISFD E GM KAVE M+ Q +DGN+LKV
Sbjct:  593 GFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGSKEEVTKAAVVTASSGFAFISFDKERGMEKAVECMDGQKLDGNILKV 689
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2220.5894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJZ2_ECTSI5.090e-2559.79Polyphosphate kinase 2 family protein n=1 Tax=Ecto... [more]
A0A6H5JE04_9PHAE3.600e-2458.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2220contigH-paniculata_contig2220:6670..6972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-06_007530.1
Exons1
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.6319659-CDS-H-paniculata_contig2220:6669..69721622929613.6319659-CDS-H-paniculata_contig2220:6669..6972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 6670..6972 +
1691480935.7820325-CDS-H-paniculata_contig2220:6669..69721691480935.7820325-CDS-H-paniculata_contig2220:6669..6972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 6670..6972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2220.5894.1prot_H-paniculata_contig2220.5894.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2220 6670..6972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2220.5894.1

>prot_H-paniculata_contig2220.5894.1 ID=prot_H-paniculata_contig2220.5894.1|Name=mRNA_H-paniculata_contig2220.5894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MGWHVFVKGISISTTFTDLAQRFAAFGDVNGLKAIFNQVACKTERSGSRA
SGQAVVMASAGVAFISFDNEEGMLKAVEGMNDQVVDGNVLKVRGKQRHHT
*
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mRNA from alignment at H-paniculata_contig2220:6670..6972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2220.5894.1 ID=mRNA_H-paniculata_contig2220.5894.1|Name=mRNA_H-paniculata_contig2220.5894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig2220:6670..6972+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTGGCACGTGTTCGTGAAGGGTATCTCGATCTCGACCACGTTCAC
GGATCTGGCCCAGCGCTTTGCTGCGTTCGGCGACGTGAACGGGTTGAAGG
CTATCTTCAACCAGGTCGCATGTAAGACAGAGCGCAGCGGCAGCCGGGCG
TCTGGTCAGGCCGTGGTCATGGCGAGTGCTGGCGTTGCGTTCATTAGCTT
CGACAACGAGGAGGGCATGCTGAAGGCAGTAGAAGGCATGAATGATCAAG
TTGTCGACGGCAACGTGCTGAAGGTGAGAGGCAAGCAGAGGCATCACACG
TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2220:6670..6972+

>mRNA_H-paniculata_contig2220.5894.1 ID=mRNA_H-paniculata_contig2220.5894.1|Name=mRNA_H-paniculata_contig2220.5894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig2220:6670..6972+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTGGCACGTGTTCGTGAAGGGTATCTCGATCTCGACCACGTTCAC
GGATCTGGCCCAGCGCTTTGCTGCGTTCGGCGACGTGAACGGGTTGAAGG
CTATCTTCAACCAGGTCGCATGTAAGACAGAGCGCAGCGGCAGCCGGGCG
TCTGGTCAGGCCGTGGTCATGGCGAGTGCTGGCGTTGCGTTCATTAGCTT
CGACAACGAGGAGGGCATGCTGAAGGCAGTAGAAGGCATGAATGATCAAG
TTGTCGACGGCAACGTGCTGAAGGTGAGAGGCAAGCAGAGGCATCACACG
TGAATGGGCTGGCACGTGTTCGTGAAGGGTATCTCGATCTCGACCACGTT
CACGGATCTGGCCCAGCGCTTTGCTGCGTTCGGCGACGTGAACGGGTTGA
AGGCTATCTTCAACCAGGTCGCATGTAAGACAGAGCGCAGCGGCAGCCGG
GCGTCTGGTCAGGCCGTGGTCATGGCGAGTGCTGGCGTTGCGTTCATTAG
CTTCGACAACGAGGAGGGCATGCTGAAGGCAGTAGAAGGCATGAATGATC
AAGTTGTCGACGGCAACGTGCTGAAGGTGAGAGGCAAGCAGAGGCATCAC
ACGTGA
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