mRNA_H-paniculata_contig22199.5893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22199.5893.1
Unique NamemRNA_H-paniculata_contig22199.5893.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Match: A0A6H5JUH8_9PHAE (UPF0020 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.170e-19
Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 FDLKKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILV 138
            FDLKKRPYLGPTSMDNELALVMANMAL  K KLCFDPF GTGSILV
Sbjct:  190 FDLKKRPYLGPTSMDNELALVMANMALVGKGKLCFDPFVGTGSILV 235
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BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Match: D8LT48_ECTSI (UPF0020 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT48_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 5.180e-19
Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 FDLKKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILV 138
            FDLKKRPYLGPTSMDNELALVMANMAL  K KLCFDPF GTGSILV
Sbjct:  190 FDLKKRPYLGPTSMDNELALVMANMALVGKGKLCFDPFVGTGSILV 235
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BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Match: A0A7S2S5R6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5R6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.230e-14
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 KKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILVVSIL 150
            KKR YLGPTSMD+EL+L+M N+A  +K   CFDPFAGTGSIL+   L
Sbjct:    1 KKRTYLGPTSMDSELSLIMTNLARVEKSSFCFDPFAGTGSILLTCAL 47
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BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Match: K0R162_THAOC (UPF0020 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R162_THAOC)

HSP 1 Score: 71.6 bits (174), Expect = 2.530e-13
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 FDLKKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILVVSIL 150
            F LKKR YLGPTSMD+EL+L+M N+AL DK    FDPF GTGSIL+ + L
Sbjct:  260 FSLKKRKYLGPTSMDSELSLIMTNLALIDKGSFVFDPFTGTGSILLTAAL 309
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BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Match: A0A1Y2G2Y0_9BASI (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2G2Y0_9BASI)

HSP 1 Score: 68.2 bits (165), Expect = 4.190e-12
Identity = 30/48 (62.50%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 FDLKKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILVVS 144
            FDLKKR Y+G TSM+ E++L+MAN ALA + K+C+DPFAGTGS+L+ +
Sbjct:  186 FDLKKRSYIGNTSMEAEVSLLMANQALASEGKVCYDPFAGTGSMLLTA 233
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BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Match: A0A7S3F8P6_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F8P6_9VIRI)

HSP 1 Score: 65.1 bits (157), Expect = 5.430e-12
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    4 DLKKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILVVS 144
            DLKKR YLGPT+MD+E++L+MANM    +  L  DPFAGTGS+LV +
Sbjct:  102 DLKKRAYLGPTAMDHEMSLIMANMGCCRRGTLTLDPFAGTGSVLVAA 148
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BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Match: F0Y1S1_AURAN (UPF0020 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1S1_AURAN)

HSP 1 Score: 67.8 bits (164), Expect = 5.490e-12
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 DLKKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILVVSIL 150
            DLK+R YLGPT++DNELALVMAN A  D   L  DPFAGTGSILV   L
Sbjct:  188 DLKRRIYLGPTALDNELALVMANCARCDVGSLVLDPFAGTGSILVACAL 236
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BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Match: B8C0I8_THAPS (UPF0020 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0I8_THAPS)

HSP 1 Score: 67.8 bits (164), Expect = 5.750e-12
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 FDLKKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILVVSIL 150
            + LKKR YLGPTSMD+EL+L+M N+AL  K    FDPF GTGSIL+ + L
Sbjct: 1063 YSLKKRLYLGPTSMDSELSLIMTNLALVKKGSFAFDPFVGTGSILLTTAL 1112
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BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Match: A0A392N7F5_9FABA (tRNA (Guanine(10)-N2)-methyltransferase-like protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392N7F5_9FABA)

HSP 1 Score: 65.1 bits (157), Expect = 8.800e-12
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 FDLKKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILVVS 144
            ++LK R YLGPT+MD E+A +MAN ALA   KL +DPF GTGSILV +
Sbjct:   68 YELKSRTYLGPTAMDAEIAFLMANQALATPGKLVYDPFVGTGSILVAA 115
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BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Match: A0A438J0G3_VITVI (tRNA (Guanine(10)-N2)-methyltransferase-like n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J0G3_VITVI)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-11
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 FDLKKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILVVS 144
            + LK R YLGPT+MD E+A +MAN ALA   KL +DPF GTGSILV +
Sbjct:   64 YQLKSRTYLGPTAMDAEMAFLMANQALATAGKLVYDPFVGTGSILVAA 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22199.5893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUH8_9PHAE5.170e-1991.30UPF0020 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LT48_ECTSI5.180e-1991.30UPF0020 domain-containing protein (Fragment) n=1 T... [more]
A0A7S2S5R6_9STRA6.230e-1465.96Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
K0R162_THAOC2.530e-1366.00UPF0020 domain-containing protein n=1 Tax=Thalassi... [more]
A0A1Y2G2Y0_9BASI4.190e-1262.50S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S3F8P6_9VIRI5.430e-1261.70Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
F0Y1S1_AURAN5.490e-1269.39UPF0020 domain-containing protein (Fragment) n=1 T... [more]
B8C0I8_THAPS5.750e-1262.00UPF0020 domain-containing protein n=1 Tax=Thalassi... [more]
A0A392N7F5_9FABA8.800e-1262.50tRNA (Guanine(10)-N2)-methyltransferase-like prote... [more]
A0A438J0G3_VITVI1.300e-1162.50tRNA (Guanine(10)-N2)-methyltransferase-like n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22199contigH-paniculata_contig22199:1294..1443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D8LT48
Preferred nameTRMT11
KEGG koko:K02995,ko:K15430
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001510,GO:0002940,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004809,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0043528,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1902494,GO:1990234
EggNOG free text desc.tRNA (guanine-N2-)-methyltransferase activity
EggNOG OGsCOG1041@1,KOG2671@2759
EC2.1.1.214
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03016
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.5892534-CDS-H-paniculata_contig22199:1293..14431622929613.5892534-CDS-H-paniculata_contig22199:1293..1443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22199 1294..1443 +
1691480935.7587845-CDS-H-paniculata_contig22199:1293..14431691480935.7587845-CDS-H-paniculata_contig22199:1293..1443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22199 1294..1443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22199.5893.1prot_H-paniculata_contig22199.5893.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22199 1294..1443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22199.5893.1

>prot_H-paniculata_contig22199.5893.1 ID=prot_H-paniculata_contig22199.5893.1|Name=mRNA_H-paniculata_contig22199.5893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
FDLKKRPYLGPTSMDNELALVMANMALADKRKLCFDPFAGTGSILVVSIL
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mRNA from alignment at H-paniculata_contig22199:1294..1443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22199.5893.1 ID=mRNA_H-paniculata_contig22199.5893.1|Name=mRNA_H-paniculata_contig22199.5893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig22199:1294..1443+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGACCTCAAGAAGCGGCCGTACCTGGGACCCACGTCGATGGATAATGA
GCTGGCTCTGGTAATGGCGAACATGGCCCTCGCCGACAAAAGGAAACTGT
GCTTCGACCCCTTCGCCGGCACCGGCTCTATTCTTGTGGTCAGTATTTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig22199:1294..1443+

>mRNA_H-paniculata_contig22199.5893.1 ID=mRNA_H-paniculata_contig22199.5893.1|Name=mRNA_H-paniculata_contig22199.5893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig22199:1294..1443+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGACCTCAAGAAGCGGCCGTACCTGGGACCCACGTCGATGGATAATGA
GCTGGCTCTGGTAATGGCGAACATGGCCCTCGCCGACAAAAGGAAACTGT
GCTTCGACCCCTTCGCCGGCACCGGCTCTATTCTTGTGGTCAGTATTTTA
TTCGACCTCAAGAAGCGGCCGTACCTGGGACCCACGTCGATGGATAATGA
GCTGGCTCTGGTAATGGCGAACATGGCCCTCGCCGACAAAAGGAAACTGT
GCTTCGACCCCTTCGCCGGCACCGGCTCTATTCTTGTGGTCAGTATTTTA
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