mRNA_H-paniculata_contig22198.5892.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22198.5892.1
Unique NamemRNA_H-paniculata_contig22198.5892.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22198.5892.1 vs. uniprot
Match: D8LKJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ4_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 2.290e-46
Identity = 126/302 (41.72%), Postives = 154/302 (50.99%), Query Frame = 2 
Query:  638 ATLAGIDDCIRQWKAARHSGQAVLTSLSNTLLLRTHLDKGRNIPTITPDYSGKGGMGEANAESVWGVLAGAAGGSTVARVSVASEARVRRLHYELTSLQDAMLAAAGGLRRHASDARRLHFSLAPDVSTTCKAMPGAAAVAVGVTSAAEADQSXXXGGGIPAGHREQHIAGVESGQSPVSRSLAELAELVSLLSLSENTSDRRVRIEGDDSDGDEERGCSSFVGWGYGVGDVADSAADVADMLMKEALVTATITQGVTELVSRGDRDALTIYAAAWMMQPYLDARRMKELQKMAGA-GKGAR 1540
            ATL  ID C+R+WKAARH GQAVLT LSN LLLRT++DKG                  A   +VWG LAGA  G+TV+RVSVA+E R RRLH +L++LQDAM+AAAG LRRHA + RR   S                                       AG  +   +G  SG                                             + VG GY + DVAD+ + VA+MLMKEALVTAT+ QGV +   R DR+ALT+YAAAWMMQPY+DA R+KEL+ M G  G+G R
Sbjct:   25 ATLDEIDGCLRRWKAARHEGQAVLTDLSNALLLRTYVDKGXXXXXXXR---------AATDGAVWGALAGA--GTTVSRVSVATEHRARRLHGDLSALQDAMVAAAGELRRHAREVRRRWVS-------------------------------------ARAGGEDHRTSGSSSGAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------XAAVGGGYALVDVADTTSQVAEMLMKEALVTATVVQGVGQEHGRDDREALTVYAAAWMMQPYVDAGRLKELEVMVGGQGRGKR 266
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BLAST of mRNA_H-paniculata_contig22198.5892.1 vs. uniprot
Match: A0A835ZE08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE08_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.590e-5
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 2 
Query: 1307 GW---GYGVGDVADSAADVADMLMKEALVTATITQGVTELVSRGDRDALTIYAAAWMMQPYLDARRMKELQKMAGAGKGAR 1540
            GW   GY   D+A +A  +  ML +E  V   +     +  SR   D LT+YAAAWMMQPY++    K+L +M   GK  R
Sbjct:  112 GWHNGGYSAADIAQAALALGRMLEREVAVAEAVCADAGDCSSR---DTLTLYAAAWMMQPYMERGLWKDLLRMTETGKPGR 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22198.5892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKJ4_ECTSI2.290e-4641.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZE08_9STRA5.590e-539.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22198contigH-paniculata_contig22198:693..3322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003180.1
Exons1
Model size2630
Cds size1044
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22198.5892.1prot_H-paniculata_contig22198.5892.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22198 1210..2253 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.425822-UTR-H-paniculata_contig22198:692..12091622929613.425822-UTR-H-paniculata_contig22198:692..1209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22198 693..1209 +
1691480935.7317183-UTR-H-paniculata_contig22198:692..12091691480935.7317183-UTR-H-paniculata_contig22198:692..1209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22198 693..1209 +
1622929613.5467265-UTR-H-paniculata_contig22198:2253..33221622929613.5467265-UTR-H-paniculata_contig22198:2253..3322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22198 2254..3322 +
1691480935.7500563-UTR-H-paniculata_contig22198:2253..33221691480935.7500563-UTR-H-paniculata_contig22198:2253..3322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22198 2254..3322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.5336778-CDS-H-paniculata_contig22198:1209..22531622929613.5336778-CDS-H-paniculata_contig22198:1209..2253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22198 1210..2253 +
1691480935.7399201-CDS-H-paniculata_contig22198:1209..22531691480935.7399201-CDS-H-paniculata_contig22198:1209..2253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22198 1210..2253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22198.5892.1

>prot_H-paniculata_contig22198.5892.1 ID=prot_H-paniculata_contig22198.5892.1|Name=mRNA_H-paniculata_contig22198.5892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=348bp
MTSSVDTPKVRASPSTSATPSITTPDKPAKLKNANSSSLSATLAGIDDCI
RQWKAARHSGQAVLTSLSNTLLLRTHLDKGRNIPTITPDYSGKGGMGEAN
AESVWGVLAGAAGGSTVARVSVASEARVRRLHYELTSLQDAMLAAAGGLR
RHASDARRLHFSLAPDVSTTCKAMPGAAAVAVGVTSAAEADQSGSGGGGI
PAGHREQHIAGVESGQSPVSRSLAELAELVSLLSLSENTSDRRVRIEGDD
SDGDEERGCSSFVGWGYGVGDVADSAADVADMLMKEALVTATITQGVTEL
VSRGDRDALTIYAAAWMMQPYLDARRMKELQKMAGAGKGARPKGVSR*
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mRNA from alignment at H-paniculata_contig22198:693..3322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22198.5892.1 ID=mRNA_H-paniculata_contig22198.5892.1|Name=mRNA_H-paniculata_contig22198.5892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2630bp|location=Sequence derived from alignment at H-paniculata_contig22198:693..3322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTATTGAAAGGCGCACACGACGACGTGGTCATCACACTGCTGAAGCC
AATCGAAGCTTGAGTTTTCGACCCCGCCGCGACCTGAACACGAGTCATCC
GGTTGTGTGTCCTGCGGCTGCGAGAGTCATCCACCTGGGGCGAGCAAGCG
AGCGAAATTAACAGTACAAAAGAGAGATAATTTTGCCTCGTGCGTCTTGA
GTGGGTGGGCCGTTGCGAAGAGTAGTGGATTCCTCCAAGCCAGTTGATCT
GCAAAACCGTTCTTATTTCTGTTGTCGCTTTCGTGATATACATTTAAGGT
GGATTTAATTGTCGGCGGCTCTTGGTGAAAGGAGTATTACCTGTAGGAGA
TCAGGACCAAACATTTCCGGAATCCCCTCCCATCTTTTTTATCGGGGATA
CAGTATTTATACCCTCACTTTATTCTTATTTTGTTAATCGTTATTTCTTC
ATAGCTATCACCCCTGTGGTGTGTGTGTCTGTGTGTCTTCGCGTTGGTGT
AACCCCTTTGCCAAAACATGACGTCTTCAGTAGACACCCCAAAGGTCCGG
GCATCACCATCAACCTCGGCTACTCCCTCCATTACAACCCCAGACAAACC
CGCCAAATTAAAAAATGCCAACAGCAGTAGCCTCAGCGCAACCTTGGCCG
GCATTGATGACTGTATACGCCAGTGGAAAGCGGCGCGCCACAGCGGCCAA
GCCGTTCTTACGTCGCTCAGTAACACCCTTCTCCTCCGCACACACCTCGA
CAAGGGCCGAAACATTCCTACCATCACCCCCGACTACAGTGGCAAGGGCG
GAATGGGGGAGGCCAATGCCGAAAGTGTTTGGGGAGTGCTCGCCGGCGCG
GCGGGCGGCAGCACCGTGGCGCGGGTATCCGTTGCCTCCGAAGCGCGCGT
GCGACGGCTACACTACGAGCTGACCTCGCTACAAGACGCGATGCTCGCGG
CGGCGGGAGGTCTCCGCCGACACGCCAGCGATGCCCGTCGGTTGCACTTC
TCCCTCGCTCCCGACGTGTCTACTACATGTAAAGCTATGCCTGGCGCCGC
CGCCGTCGCGGTAGGTGTGACGAGCGCAGCCGAAGCGGATCAAAGCGGCA
GCGGCGGTGGTGGTATCCCCGCTGGTCATCGCGAGCAACATATCGCGGGC
GTGGAGTCTGGCCAGTCGCCAGTGAGCAGATCATTAGCGGAGCTTGCGGA
GCTTGTTTCTCTCCTGTCGTTGTCGGAGAACACAAGCGACAGGCGGGTCA
GAATAGAGGGTGATGATAGCGATGGTGATGAAGAAAGGGGTTGTAGCAGT
TTTGTTGGTTGGGGCTATGGGGTGGGAGATGTGGCGGACTCTGCCGCCGA
CGTGGCAGATATGCTGATGAAGGAAGCCTTGGTTACGGCGACCATTACGC
AGGGCGTGACCGAGTTGGTTAGCCGCGGGGACCGGGATGCGCTGACTATA
TACGCGGCGGCGTGGATGATGCAGCCGTATTTGGATGCTCGGCGAATGAA
AGAGTTGCAAAAGATGGCGGGTGCGGGAAAGGGTGCACGCCCTAAAGGCG
TATCTAGATAAAATTGGATGTCATGACACGGAGTCTTTTCGTGATATATG
CGCATTGGGGAGGATGTAATGGTGTTTTAAGTGATTCTGTAATCTAAATC
ATGGCAGTTAGTTGTCTATTAAAAGTAAGAAGCGCGGATCAGGGAGTTTG
CTTTTTTTTTAGTTTTATTGGAAGCTCTCATCAACCCTCTACAGGCGAAA
AATACGAGTGTAGGAAAGATTATGGTCCCTTGAGCGAACACCTTGTGTGC
TCCTCAGAACAATTGACCCTTTTTTTTTCGCACAGTCCTGTTGGAATGCA
TGCAGACCGAACTAATCATTGTATATGTATCCCATCTCGTTTGTTTCGAA
TATGCTACTTTGAACTGACTACGTAGCAGACAGCGAGCGGTCTTCATCAT
CCATCTATTCTCAAAAGGCCAATGTCGCACGTTTTGGCGTCCAACGTACA
TTTCGCTTTCCGTCGCTTTGTTACCAACAAAATTAATAGAGCTAGCCAAC
AGCAAGTATACATCAAGTCAAACAAAATGATCTGCGCAAAGCAAAACTCT
GGTGCCAGTGCTTGCACACACACGTGAATGTGGCCTTGGGTTGCTTTCCG
GGAGTTGGCTTCTGCCACCCGGAAGTAGGACGAGAGAGGGAATAGGTGTC
CCGCACTCTTCTCGTCCGCCCATTTGCTTTAACCCCTATATGCAGTGTAT
CACTTCGTCATCGACAGTTTTGTGGTTCGTGGACGTGGCTAAATGCTTGA
CATACAGCGATGAGTGGGCCTGTTCATAGCACGGTATATATGTGCCCAGA
CGGGTACCTTGTTGCAGATACTACTGTAACGTCCACGCTGTGGTGAGGTT
AGCAGTGTTTACACAACGTATGAGGACGTCGTGGTGAGGTTGACAATGTA
CGTAAAACGCCCTGATACGTTATATATATGCACGTTGTCAAACCTTAAGC
AACGTGGAGACTTTGTAATATCCGCAATAAGGTACTCAGAAGTTACCCTC
TGGCCATGAGAGCATCCTAAATGAGGGATGTGCCTTGTAAGTTGGATGCC
AAAATCTGTACGCGATCTGTACCATGGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig22198:693..3322+

>mRNA_H-paniculata_contig22198.5892.1 ID=mRNA_H-paniculata_contig22198.5892.1|Name=mRNA_H-paniculata_contig22198.5892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2088bp|location=Sequence derived from alignment at H-paniculata_contig22198:693..3322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTCTTCAGTAGACACCCCAAAGGTCCGGGCATCACCATCAACCTC
GGCTACTCCCTCCATTACAACCCCAGACAAACCCGCCAAATTAAAAAATG
CCAACAGCAGTAGCCTCAGCGCAACCTTGGCCGGCATTGATGACTGTATA
CGCCAGTGGAAAGCGGCGCGCCACAGCGGCCAAGCCGTTCTTACGTCGCT
CAGTAACACCCTTCTCCTCCGCACACACCTCGACAAGGGCCGAAACATTC
CTACCATCACCCCCGACTACAGTGGCAAGGGCGGAATGGGGGAGGCCAAT
GCCGAAAGTGTTTGGGGAGTGCTCGCCGGCGCGGCGGGCGGCAGCACCGT
GGCGCGGGTATCCGTTGCCTCCGAAGCGCGCGTGCGACGGCTACACTACG
AGCTGACCTCGCTACAAGACGCGATGCTCGCGGCGGCGGGAGGTCTCCGC
CGACACGCCAGCGATGCCCGTCGGTTGCACTTCTCCCTCGCTCCCGACGT
GTCTACTACATGTAAAGCTATGCCTGGCGCCGCCGCCGTCGCGGTAGGTG
TGACGAGCGCAGCCGAAGCGGATCAAAGCGGCAGCGGCGGTGGTGGTATC
CCCGCTGGTCATCGCGAGCAACATATCGCGGGCGTGGAGTCTGGCCAGTC
GCCAGTGAGCAGATCATTAGCGGAGCTTGCGGAGCTTGTTTCTCTCCTGT
CGTTGTCGGAGAACACAAGCGACAGGCGGGTCAGAATAGAGGGTGATGAT
AGCGATGGTGATGAAGAAAGGGGTTGTAGCAGTTTTGTTGGTTGGGGCTA
TGGGGTGGGAGATGTGGCGGACTCTGCCGCCGACGTGGCAGATATGCTGA
TGAAGGAAGCCTTGGTTACGGCGACCATTACGCAGGGCGTGACCGAGTTG
GTTAGCCGCGGGGACCGGGATGCGCTGACTATATACGCGGCGGCGTGGAT
GATGCAGCCGTATTTGGATGCTCGGCGAATGAAAGAGTTGCAAAAGATGG
CGGGTGCGGGAAAGGGTGCACGCCCTAAAGGCGTATCTAGATAAATGACG
TCTTCAGTAGACACCCCAAAGGTCCGGGCATCACCATCAACCTCGGCTAC
TCCCTCCATTACAACCCCAGACAAACCCGCCAAATTAAAAAATGCCAACA
GCAGTAGCCTCAGCGCAACCTTGGCCGGCATTGATGACTGTATACGCCAG
TGGAAAGCGGCGCGCCACAGCGGCCAAGCCGTTCTTACGTCGCTCAGTAA
CACCCTTCTCCTCCGCACACACCTCGACAAGGGCCGAAACATTCCTACCA
TCACCCCCGACTACAGTGGCAAGGGCGGAATGGGGGAGGCCAATGCCGAA
AGTGTTTGGGGAGTGCTCGCCGGCGCGGCGGGCGGCAGCACCGTGGCGCG
GGTATCCGTTGCCTCCGAAGCGCGCGTGCGACGGCTACACTACGAGCTGA
CCTCGCTACAAGACGCGATGCTCGCGGCGGCGGGAGGTCTCCGCCGACAC
GCCAGCGATGCCCGTCGGTTGCACTTCTCCCTCGCTCCCGACGTGTCTAC
TACATGTAAAGCTATGCCTGGCGCCGCCGCCGTCGCGGTAGGTGTGACGA
GCGCAGCCGAAGCGGATCAAAGCGGCAGCGGCGGTGGTGGTATCCCCGCT
GGTCATCGCGAGCAACATATCGCGGGCGTGGAGTCTGGCCAGTCGCCAGT
GAGCAGATCATTAGCGGAGCTTGCGGAGCTTGTTTCTCTCCTGTCGTTGT
CGGAGAACACAAGCGACAGGCGGGTCAGAATAGAGGGTGATGATAGCGAT
GGTGATGAAGAAAGGGGTTGTAGCAGTTTTGTTGGTTGGGGCTATGGGGT
GGGAGATGTGGCGGACTCTGCCGCCGACGTGGCAGATATGCTGATGAAGG
AAGCCTTGGTTACGGCGACCATTACGCAGGGCGTGACCGAGTTGGTTAGC
CGCGGGGACCGGGATGCGCTGACTATATACGCGGCGGCGTGGATGATGCA
GCCGTATTTGGATGCTCGGCGAATGAAAGAGTTGCAAAAGATGGCGGGTG
CGGGAAAGGGTGCACGCCCTAAAGGCGTATCTAGATAA
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