mRNA_H-paniculata_contig22193.5891.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22193.5891.1
Unique NamemRNA_H-paniculata_contig22193.5891.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22193.5891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22193contigH-paniculata_contig22193:1060..1543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.3621247-UTR-H-paniculata_contig22193:1059..10901622929613.3621247-UTR-H-paniculata_contig22193:1059..1090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22193 1060..1090 +
1691480935.7102673-UTR-H-paniculata_contig22193:1059..10901691480935.7102673-UTR-H-paniculata_contig22193:1059..1090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22193 1060..1090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.378148-CDS-H-paniculata_contig22193:1090..15431622929613.378148-CDS-H-paniculata_contig22193:1090..1543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22193 1091..1543 +
1691480935.718341-CDS-H-paniculata_contig22193:1090..15431691480935.718341-CDS-H-paniculata_contig22193:1090..1543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22193 1091..1543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22193.5891.1prot_H-paniculata_contig22193.5891.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22193 1091..1543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22193.5891.1

>prot_H-paniculata_contig22193.5891.1 ID=prot_H-paniculata_contig22193.5891.1|Name=mRNA_H-paniculata_contig22193.5891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MQLPKSRSVGQALVAESQLGRGFGKGKWRGRGFGKKNSNSGENSSGGKQS
NRAGTKSETSLVPEDMRGKCRRCKLPGHFWYECKARVIPAQTQVQDASST
SGEQVSGVSVALISSSGSHNDGDEFGLETGFETWRSDSAATFHMTGSKEY
M
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mRNA from alignment at H-paniculata_contig22193:1060..1543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22193.5891.1 ID=mRNA_H-paniculata_contig22193.5891.1|Name=mRNA_H-paniculata_contig22193.5891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=484bp|location=Sequence derived from alignment at H-paniculata_contig22193:1060..1543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAATTGAGCACGTAGTAAGACAAAGGTACATGCAGCTCCCAAAATCTA
GGAGTGTGGGTCAGGCTCTTGTAGCCGAGTCACAGCTGGGACGTGGTTTT
GGAAAAGGAAAATGGCGCGGCAGAGGGTTTGGGAAAAAGAACAGCAATAG
CGGAGAAAATTCCTCGGGTGGTAAGCAGAGTAACCGGGCTGGTACAAAGA
GTGAAACTTCATTGGTTCCGGAAGACATGAGAGGGAAGTGTAGACGATGC
AAGCTGCCGGGACATTTTTGGTACGAGTGCAAGGCGCGTGTCATCCCTGC
GCAGACTCAGGTGCAAGATGCATCAAGCACCAGCGGTGAGCAAGTGTCTG
GTGTCTCTGTTGCGTTGATTAGCAGTTCTGGGAGTCACAATGATGGTGAT
GAATTTGGGCTAGAGACGGGTTTTGAGACGTGGAGAAGTGATAGTGCAGC
TACGTTTCACATGACCGGTTCAAAAGAGTATATG
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Coding sequence (CDS) from alignment at H-paniculata_contig22193:1060..1543+

>mRNA_H-paniculata_contig22193.5891.1 ID=mRNA_H-paniculata_contig22193.5891.1|Name=mRNA_H-paniculata_contig22193.5891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig22193:1060..1543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCTCCCAAAATCTAGGAGTGTGGGTCAGGCTCTTGTAGCCGAGTC
ACAGCTGGGACGTGGTTTTGGAAAAGGAAAATGGCGCGGCAGAGGGTTTG
GGAAAAAGAACAGCAATAGCGGAGAAAATTCCTCGGGTGGTAAGCAGAGT
AACCGGGCTGGTACAAAGAGTGAAACTTCATTGGTTCCGGAAGACATGAG
AGGGAAGTGTAGACGATGCAAGCTGCCGGGACATTTTTGGTACGAGTGCA
AGGCGCGTGTCATCCCTGCGCAGACTCAGGTGCAAGATGCATCAAGCACC
AGCGGTGAGCAAGTGTCTGGTGTCTCTGTTGCGTTGATTAGCAGTTCTGG
GAGTCACAATGATGGTGATGAATTTGGGCTAGAGACGGGTTTTGAGACGT
GGAGAAGTGATAGTGCAGCTACGTTTCACATGACCGGTTCAAAAGAGTAT
ATGATGCAGCTCCCAAAATCTAGGAGTGTGGGTCAGGCTCTTGTAGCCGA
GTCACAGCTGGGACGTGGTTTTGGAAAAGGAAAATGGCGCGGCAGAGGGT
TTGGGAAAAAGAACAGCAATAGCGGAGAAAATTCCTCGGGTGGTAAGCAG
AGTAACCGGGCTGGTACAAAGAGTGAAACTTCATTGGTTCCGGAAGACAT
GAGAGGGAAGTGTAGACGATGCAAGCTGCCGGGACATTTTTGGTACGAGT
GCAAGGCGCGTGTCATCCCTGCGCAGACTCAGGTGCAAGATGCATCAAGC
ACCAGCGGTGAGCAAGTGTCTGGTGTCTCTGTTGCGTTGATTAGCAGTTC
TGGGAGTCACAATGATGGTGATGAATTTGGGCTAGAGACGGGTTTTGAGA
CGTGGAGAAGTGATAGTGCAGCTACGTTTCACATGACCGGTTCAAAAGAG
TATATG
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