prot_H-paniculata_contig22188.5888.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22188.5888.1
Unique Nameprot_H-paniculata_contig22188.5888.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length65
Homology
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A151QP37_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QP37_CAJCA)

HSP 1 Score: 63.5 bits (153), Expect = 3.430e-10
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:    4 VYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSV 63
            VY L+ KSE     K+F+ N+ K NGL IK L SD GGEFT + F+ +C ++GI+++ +V
Sbjct:  495 VYFLKEKSEVFENFKKFKDNVEKENGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTV 554          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A2Y6G9_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Y6G9_HIBSY)

HSP 1 Score: 58.9 bits (141), Expect = 1.460e-8
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 0
Query:    4 VYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSV 63
            VY L+ KSEA    ++++  +    GL +KRL SD GGE+    FR FCA +GIK E +V
Sbjct:  485 VYFLKKKSEAFDTFRKWKAMVKNETGLKVKRLRSDNGGEYKNRRFRDFCANNGIKMETTV 544          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A2ZKQ4_HIBSY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZKQ4_HIBSY)

HSP 1 Score: 58.9 bits (141), Expect = 1.460e-8
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 0
Query:    4 VYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSV 63
            VY L+ KSE     ++++  +   NG+ +KRL SD GGE+    FR FCA +GIK E +V
Sbjct:  399 VYFLKKKSEVFDTFRKWKAMVENENGMKVKRLRSDNGGEYRNRRFREFCANNGIKMETTV 458          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A3AJF7_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AJF7_HIBSY)

HSP 1 Score: 58.9 bits (141), Expect = 1.470e-8
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 0
Query:    4 VYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSV 63
            VY L+ KSE     ++++  +   NG+ +KRL SD GGE+    FR FCA +GIK E +V
Sbjct:  513 VYFLKKKSEVFDTFRKWKAMVENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTV 572          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A3BE56_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BE56_HIBSY)

HSP 1 Score: 58.9 bits (141), Expect = 1.470e-8
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 0
Query:    4 VYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSV 63
            VY L+ KSE     ++++  +   NG+ +KRL SD GGE+    FR FCA +GIK E +V
Sbjct:  501 VYFLKKKSEVFDTFRKWKAMVENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTV 560          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A3A1U7_HIBSY (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A1U7_HIBSY)

HSP 1 Score: 58.9 bits (141), Expect = 1.470e-8
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 0
Query:    4 VYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSV 63
            VY L+ KSE     ++++  +   NG+ +KRL SD GGE+    FR FCA +GIK E +V
Sbjct:  395 VYFLKKKSEVFDTFRKWKAMVENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTV 454          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.710e-8
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    4 VYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSV 63
            VY ++ K+E L   K+FE ++  A G  IKRL SD GGE+TG  F+ + ++ GI+ E +V
Sbjct:   79 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTV 138          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A2Z3T6_HIBSY (Piezo-type mechanosensitive ion channel-like protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Z3T6_HIBSY)

HSP 1 Score: 58.5 bits (140), Expect = 2.020e-8
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 0
Query:    4 VYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSV 63
            VY L++KSE     ++++  +    GL +KRL SD GGE+   +FR FCA +GIK E +V
Sbjct:  974 VYFLKNKSEVFDTFRKWKAMVENETGLKVKRLRSDNGGEYRDSSFRDFCANNGIKMETTV 1033          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.860e-8
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 0
Query:    4 VYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSV 63
            VY ++ K+E L   K F+ ++  A G  IKRL SD GGE+TG  F+ + ++ GI+ E +V
Sbjct:   55 VYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTV 114          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A4CGC1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CGC1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.450e-8
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    4 VYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSV 63
            VY ++ K+E L   K+FE ++  A G  IKRL SD GGE+TG  F+ + ++ GI+ E +V
Sbjct:   55 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151QP37_CAJCA3.430e-1046.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A2Y6G9_HIBSY1.460e-845.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2ZKQ4_HIBSY1.460e-843.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3AJF7_HIBSY1.470e-843.33Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A3BE56_HIBSY1.470e-843.33Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A3A1U7_HIBSY1.470e-843.33Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
A0A6G0JTE1_9STRA1.710e-843.33Integrase catalytic domain-containing protein n=3 ... [more]
A0A6A2Z3T6_HIBSY2.020e-843.33Piezo-type mechanosensitive ion channel-like prote... [more]
A0A6A3LQ24_9STRA2.860e-841.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4CGC1_9STRA3.450e-843.33Integrase catalytic domain-containing protein n=3 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..64
e-value: 3.0E-6
score: 28.8
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22188contigH-paniculata_contig22188:446..640 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22188.5888.1mRNA_H-paniculata_contig22188.5888.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22188 65..811 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22188.5888.1 ID=prot_H-paniculata_contig22188.5888.1|Name=mRNA_H-paniculata_contig22188.5888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRP
FCAESGIKQEFSVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf