mRNA_H-paniculata_contig22188.5888.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 201 bits (511), Expect = 2.030e-55 Identity = 104/250 (41.60%), Postives = 144/250 (57.60%), Query Frame = 1
Query: 1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
+C AC +GK +Q K R + LE+VHTDIAGP D S G R+ + F+DD S +Y L+ KSEAL LK+F+ K +G ++K L SD GGE+T + F FC E GI + + TPQ GVAER R++ +M +S + + R + EA R AVY LNR PT+ P E W G P + H ++F C AY R+KLDD+ +F+GYDE S +YR+YN K + +SR++ F
Sbjct: 364 LCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEF 613
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A4Y1RF43_PRUDU (Transposable element protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RF43_PRUDU) HSP 1 Score: 186 bits (472), Expect = 4.850e-54 Identity = 102/250 (40.80%), Postives = 139/250 (55.60%), Query Frame = 1
Query: 1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
+C C GK + + ERLELVH+D+ GPT S G+ + + F+DD S VY L+HKSE K+++ + GL IKRL +D GGE+ F+ FC E GI+ E +V TPQ GVAER R++ E +S + + + +++ EA A Y +NR P+ P +P E W G KL HL+VF C AYV Q R KLD KS F+GY ED YRI++ ENK V SR++ F
Sbjct: 17 MCEDCIFGKQKRVSFQTSGRTPKKERLELVHSDVWGPTTISSIGGKHYFVTFIDDHSRKVWVYFLKHKSEVFEVFKRWKAMVENETGLKIKRLRTDNGGEYEDTRFKKFCYEQGIRMERTVPGTPQHNGVAERMNRTLTERARSIRIQSGLPKQFWAEAVNTAAYLINRGPSVPLEHRIPEEVWSGKEIKLSHLKVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRIWDNENKKVIRSRDVIF 266
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: UPI000A29CC5E (uncharacterized protein LOC110224828 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29CC5E) HSP 1 Score: 192 bits (488), Expect = 1.750e-52 Identity = 98/250 (39.20%), Postives = 144/250 (57.60%), Query Frame = 1
Query: 1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
+C C GK K K + + LEL+HTD+ GP KS + ++F+DD S VY L+ KSE K+F+ ++ K +GL IK + SD GGEFT + F +C ++GI+++ +V +PQ GVAER R++ EM +S + + + + EA AVY LNR+PT+ +G P E W G P + HLRVF A+ + R KLDDKS +F+GYD +S Y++YN + K +SRN+ F
Sbjct: 500 VCEGCLLGKQFKMSFPKESSTRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNVVF 749
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein n=6 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9M197_ARATH) HSP 1 Score: 192 bits (488), Expect = 2.520e-52 Identity = 98/250 (39.20%), Postives = 143/250 (57.20%), Query Frame = 1
Query: 1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
+C C G K K + + LEL+HTD+ GP KS + ++F+DD S VY L+ KSE K+F+ ++ K +GL IK + SD GGEFT + F +C ++GI+++ +V +PQ GVAER R++ EM +S + + + + EA AVY LNR+PT+ +G P E W G P + HLRVF A+ + R KLDDKS +F+GYD +S Y++YN + K +SRNI F
Sbjct: 501 VCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 750
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY) HSP 1 Score: 191 bits (486), Expect = 4.930e-52 Identity = 101/243 (41.56%), Postives = 141/243 (58.02%), Query Frame = 1
Query: 22 GKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
GK +Q + R + LE+VHTDIAGP D S G R+ + F+DD S +Y L+ KSEAL L++F+ K +G ++K L SD GGE+T + F FC E GI + + TPQ GVAER R++ +M +S + + R + EA R AVY LNR PT+ P E W G P + HL++F C AY Q R+KLDD+ +F+GYDE S +YR+YN K + +SR++ F
Sbjct: 1292 GKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEF 1534
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: V9H0W6_ARATH (Lectin receptor kinase (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=V9H0W6_ARATH) HSP 1 Score: 187 bits (474), Expect = 9.410e-52 Identity = 93/229 (40.61%), Postives = 139/229 (60.70%), Query Frame = 1
Query: 64 QTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
++T+ +EL+HTD+ GP KS + ++F+DD S VY L+ KSE K+F+ ++ K +GL IK + SD GGEFT + F +C ++GI+++ +V +PQ GVAER R++ EM +S + + + + EA AVY LNR+PT+ +G P E W G P + HLRVF A+ + R KLDDKS +F+GYD +S Y++YN + K +SRNI F
Sbjct: 19 KSTKTVELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 247
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A5H2Y9D5_PRUDU (Integrase catalytic domain-containing protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2Y9D5_PRUDU) HSP 1 Score: 186 bits (472), Expect = 3.170e-51 Identity = 102/250 (40.80%), Postives = 139/250 (55.60%), Query Frame = 1
Query: 1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
+C C GK + + ERLELVH+D+ GPT S G+ + + F+DD S VY L+HKSE K+++ + GL IKRL +D GGE+ F+ FC E GI+ E +V TPQ GVAER R++ E +S + + + +++ EA A Y +NR P+ P +P E W G KL HL+VF C AYV Q R KLD KS F+GY ED YRI++ ENK V SR++ F
Sbjct: 17 MCEDCIFGKQKRVSFQTSGRTPKKERLELVHSDVWGPTTISSIGGKHYFVTFIDDHSRKVWVYFLKHKSEVFEVFKRWKAMVENETGLKIKRLRTDNGGEYEDTRFKKFCYEQGIRMERTVPGTPQHNGVAERMNRTLTERARSIRIQSGLPKQFWAEAVNTAAYLINRGPSVPLEHRIPEEVWSGKEIKLSHLKVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRIWDNENKKVIRSRDVIF 266
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A2K3L574_TRIPR (Copia-type reverse transcriptase-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L574_TRIPR) HSP 1 Score: 188 bits (478), Expect = 3.570e-51 Identity = 98/249 (39.36%), Postives = 142/249 (57.03%), Query Frame = 1
Query: 1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGP-TDKSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIR 744
C C K ++ +K Q LEL+HTDI GP T +SF G+R+ I F+DD S VY L+ KSEA K+F+ + KA HIK + SD GGE+T AF +C E GI++ + +PQ GVAER R+V +M +S + + +M +++ EA + A+Y NR P P E W G P + HL+VF AY Q R KL+DKS +F+GYDE + Y++++ +K V +SR++R
Sbjct: 483 FCEECVLSKQTRTSFQKKAEYQAKHILELIHTDICGPITPESFSGKRYFISFIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVEKATDRHIKAVRSDRGGEYTSTAFMKYCEEQGIRRFLTAPYSPQQNGVAERKNRTVLDMVRSMLKSKNMSKQFWAEAVQCAIYVQNRCPHAKLEDQTPQEVWSGQKPTVSHLKVFGSVAYAHLPDQRRTKLEDKSQKYIFIGYDEKTKGYKLFDPISKKVIVSRDVR 731
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR) HSP 1 Score: 187 bits (475), Expect = 4.380e-51 Identity = 96/250 (38.40%), Postives = 147/250 (58.80%), Query Frame = 1
Query: 1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGP-TDKSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
IC C GK +++ + K ++TE+LEL+HTD+ GP T S G+R+ ++F+DD + VY L+ K E+ A K+F+ + +G IK L SD GGEF ++F FCA+SGIK++ + TPQ GVAER R++ M + + + + + EA AV+ LNR TR + +P E W G P +++ RVF C +V SQ R KLD +S V LG +S +YR+Y+ E + + +SR++ F
Sbjct: 477 ICETCNVGKQNRENIPKKSWWRSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQFKHESFDAFKRFKVAVENESGCKIKALRSDRGGEFNSQSFNEFCAQSGIKRQLTAAYTPQQNGVAERRNRTIMNMVRCSLTDKKVPKCFWPEAVNWAVHVLNRCITRALDDKVPEEMWSGKKPNVEYFRVFGCIGHVHIPSQFRSKLDARSHKCVLLGMSVESKAYRLYDPEQRKIVISRDVIF 726
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A151RCJ0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RCJ0_CAJCA) HSP 1 Score: 187 bits (475), Expect = 7.040e-51 Identity = 102/250 (40.80%), Postives = 140/250 (56.00%), Query Frame = 1
Query: 1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
+C C GK + +K ERLELVH+D+ GPT S G+++ + F+DD S VY L+HKSE A K ++ + GL IK+L +D GGE+ F+ FC E GI+ E +V TPQ GVAER R++ E +S V + + +++ E A Y +NR P+ P +P E W G KL HLRVF C AYV Q R KLD KS F+GY ED YR+++ ENK + SR++ F
Sbjct: 422 MCEDCIFGKQKRVSFQKGGRTPKKERLELVHSDVWGPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVENETGLKIKKLRTDNGGEYEDTRFKRFCYEHGIRMERTVPGTPQQNGVAERMNRTLTERARSMRVQSGLPKQFWAETVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRLWDDENKKMIRSRDVIF 671 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22188.5888.1 >prot_H-paniculata_contig22188.5888.1 ID=prot_H-paniculata_contig22188.5888.1|Name=mRNA_H-paniculata_contig22188.5888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPback to top mRNA from alignment at H-paniculata_contig22188:65..811- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22188.5888.1 ID=mRNA_H-paniculata_contig22188.5888.1|Name=mRNA_H-paniculata_contig22188.5888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=747bp|location=Sequence derived from alignment at H-paniculata_contig22188:65..811- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22188:65..811- >mRNA_H-paniculata_contig22188.5888.1 ID=mRNA_H-paniculata_contig22188.5888.1|Name=mRNA_H-paniculata_contig22188.5888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig22188:65..811- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |