mRNA_H-paniculata_contig22188.5888.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22188.5888.1
Unique NamemRNA_H-paniculata_contig22188.5888.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 201 bits (511), Expect = 2.030e-55
Identity = 104/250 (41.60%), Postives = 144/250 (57.60%), Query Frame = 1
Query:    1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
            +C AC +GK  +Q  K  R  +    LE+VHTDIAGP D  S  G R+ + F+DD S    +Y L+ KSEAL  LK+F+    K +G ++K L SD GGE+T + F  FC E GI  + +   TPQ  GVAER  R++ +M +S +    + R +  EA R AVY LNR PT+      P E W G  P + H ++F C AY       R+KLDD+    +F+GYDE S +YR+YN   K + +SR++ F
Sbjct:  364 LCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEF 613          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A4Y1RF43_PRUDU (Transposable element protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RF43_PRUDU)

HSP 1 Score: 186 bits (472), Expect = 4.850e-54
Identity = 102/250 (40.80%), Postives = 139/250 (55.60%), Query Frame = 1
Query:    1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
            +C  C  GK  +   +        ERLELVH+D+ GPT   S  G+ + + F+DD S    VY L+HKSE     K+++  +    GL IKRL +D GGE+    F+ FC E GI+ E +V  TPQ  GVAER  R++ E  +S  + + + +++  EA   A Y +NR P+ P    +P E W G   KL HL+VF C AYV    Q R KLD KS    F+GY ED   YRI++ ENK V  SR++ F
Sbjct:   17 MCEDCIFGKQKRVSFQTSGRTPKKERLELVHSDVWGPTTISSIGGKHYFVTFIDDHSRKVWVYFLKHKSEVFEVFKRWKAMVENETGLKIKRLRTDNGGEYEDTRFKKFCYEQGIRMERTVPGTPQHNGVAERMNRTLTERARSIRIQSGLPKQFWAEAVNTAAYLINRGPSVPLEHRIPEEVWSGKEIKLSHLKVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRIWDNENKKVIRSRDVIF 266          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: UPI000A29CC5E (uncharacterized protein LOC110224828 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29CC5E)

HSP 1 Score: 192 bits (488), Expect = 1.750e-52
Identity = 98/250 (39.20%), Postives = 144/250 (57.60%), Query Frame = 1
Query:    1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
            +C  C  GK  K    K    +  + LEL+HTD+ GP   KS     + ++F+DD S    VY L+ KSE     K+F+ ++ K +GL IK + SD GGEFT + F  +C ++GI+++ +V  +PQ  GVAER  R++ EM +S + +  + +    EA   AVY LNR+PT+  +G  P E W G  P + HLRVF   A+     + R KLDDKS   +F+GYD +S  Y++YN + K   +SRN+ F
Sbjct:  500 VCEGCLLGKQFKMSFPKESSTRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNVVF 749          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein n=6 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9M197_ARATH)

HSP 1 Score: 192 bits (488), Expect = 2.520e-52
Identity = 98/250 (39.20%), Postives = 143/250 (57.20%), Query Frame = 1
Query:    1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
            +C  C  G   K    K    +  + LEL+HTD+ GP   KS     + ++F+DD S    VY L+ KSE     K+F+ ++ K +GL IK + SD GGEFT + F  +C ++GI+++ +V  +PQ  GVAER  R++ EM +S + +  + +    EA   AVY LNR+PT+  +G  P E W G  P + HLRVF   A+     + R KLDDKS   +F+GYD +S  Y++YN + K   +SRNI F
Sbjct:  501 VCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 750          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 191 bits (486), Expect = 4.930e-52
Identity = 101/243 (41.56%), Postives = 141/243 (58.02%), Query Frame = 1
Query:   22 GKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
            GK  +Q  +  R  +    LE+VHTDIAGP D  S  G R+ + F+DD S    +Y L+ KSEAL  L++F+    K +G ++K L SD GGE+T + F  FC E GI  + +   TPQ  GVAER  R++ +M +S +    + R +  EA R AVY LNR PT+      P E W G  P + HL++F C AY     Q R+KLDD+    +F+GYDE S +YR+YN   K + +SR++ F
Sbjct: 1292 GKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEF 1534          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: V9H0W6_ARATH (Lectin receptor kinase (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=V9H0W6_ARATH)

HSP 1 Score: 187 bits (474), Expect = 9.410e-52
Identity = 93/229 (40.61%), Postives = 139/229 (60.70%), Query Frame = 1
Query:   64 QTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
            ++T+ +EL+HTD+ GP   KS     + ++F+DD S    VY L+ KSE     K+F+ ++ K +GL IK + SD GGEFT + F  +C ++GI+++ +V  +PQ  GVAER  R++ EM +S + +  + +    EA   AVY LNR+PT+  +G  P E W G  P + HLRVF   A+     + R KLDDKS   +F+GYD +S  Y++YN + K   +SRNI F
Sbjct:   19 KSTKTVELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVF 247          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A5H2Y9D5_PRUDU (Integrase catalytic domain-containing protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2Y9D5_PRUDU)

HSP 1 Score: 186 bits (472), Expect = 3.170e-51
Identity = 102/250 (40.80%), Postives = 139/250 (55.60%), Query Frame = 1
Query:    1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
            +C  C  GK  +   +        ERLELVH+D+ GPT   S  G+ + + F+DD S    VY L+HKSE     K+++  +    GL IKRL +D GGE+    F+ FC E GI+ E +V  TPQ  GVAER  R++ E  +S  + + + +++  EA   A Y +NR P+ P    +P E W G   KL HL+VF C AYV    Q R KLD KS    F+GY ED   YRI++ ENK V  SR++ F
Sbjct:   17 MCEDCIFGKQKRVSFQTSGRTPKKERLELVHSDVWGPTTISSIGGKHYFVTFIDDHSRKVWVYFLKHKSEVFEVFKRWKAMVENETGLKIKRLRTDNGGEYEDTRFKKFCYEQGIRMERTVPGTPQHNGVAERMNRTLTERARSIRIQSGLPKQFWAEAVNTAAYLINRGPSVPLEHRIPEEVWSGKEIKLSHLKVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRIWDNENKKVIRSRDVIF 266          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A2K3L574_TRIPR (Copia-type reverse transcriptase-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L574_TRIPR)

HSP 1 Score: 188 bits (478), Expect = 3.570e-51
Identity = 98/249 (39.36%), Postives = 142/249 (57.03%), Query Frame = 1
Query:    1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGP-TDKSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIR 744
             C  C   K ++   +K    Q    LEL+HTDI GP T +SF G+R+ I F+DD S    VY L+ KSEA    K+F+  + KA   HIK + SD GGE+T  AF  +C E GI++  +   +PQ  GVAER  R+V +M +S + + +M +++  EA + A+Y  NR P        P E W G  P + HL+VF   AY     Q R KL+DKS   +F+GYDE +  Y++++  +K V +SR++R
Sbjct:  483 FCEECVLSKQTRTSFQKKAEYQAKHILELIHTDICGPITPESFSGKRYFISFIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVEKATDRHIKAVRSDRGGEYTSTAFMKYCEEQGIRRFLTAPYSPQQNGVAERKNRTVLDMVRSMLKSKNMSKQFWAEAVQCAIYVQNRCPHAKLEDQTPQEVWSGQKPTVSHLKVFGSVAYAHLPDQRRTKLEDKSQKYIFIGYDEKTKGYKLFDPISKKVIVSRDVR 731          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR)

HSP 1 Score: 187 bits (475), Expect = 4.380e-51
Identity = 96/250 (38.40%), Postives = 147/250 (58.80%), Query Frame = 1
Query:    1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGP-TDKSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
            IC  C  GK +++ + K    ++TE+LEL+HTD+ GP T  S  G+R+ ++F+DD +    VY L+ K E+  A K+F+  +   +G  IK L SD GGEF  ++F  FCA+SGIK++ +   TPQ  GVAER  R++  M +  +    + + +  EA   AV+ LNR  TR  +  +P E W G  P +++ RVF C  +V   SQ R KLD +S   V LG   +S +YR+Y+ E + + +SR++ F
Sbjct:  477 ICETCNVGKQNRENIPKKSWWRSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQFKHESFDAFKRFKVAVENESGCKIKALRSDRGGEFNSQSFNEFCAQSGIKRQLTAAYTPQQNGVAERRNRTIMNMVRCSLTDKKVPKCFWPEAVNWAVHVLNRCITRALDDKVPEEMWSGKKPNVEYFRVFGCIGHVHIPSQFRSKLDARSHKCVLLGMSVESKAYRLYDPEQRKIVISRDVIF 726          
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Match: A0A151RCJ0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RCJ0_CAJCA)

HSP 1 Score: 187 bits (475), Expect = 7.040e-51
Identity = 102/250 (40.80%), Postives = 140/250 (56.00%), Query Frame = 1
Query:    1 ICSACERGKASKQPVKKYRGEQTTERLELVHTDIAGPTD-KSFEGRRFAIIFVDDCS*MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRPFCAESGIKQEFSVT*TPQSYGVAERSWRSVFEMTQSKMVTADMGRRY*GEAARAAVYCLNRAPTRPHNGGMPYEKWYGTTPKLDHLRVFSCTAYVMFQSQ*RRKLDDKSWVRVFLGYDEDSPSYRIYNRENKSVQLSRNIRF 747
            +C  C  GK  +   +K       ERLELVH+D+ GPT   S  G+++ + F+DD S    VY L+HKSE   A K ++  +    GL IK+L +D GGE+    F+ FC E GI+ E +V  TPQ  GVAER  R++ E  +S  V + + +++  E    A Y +NR P+ P    +P E W G   KL HLRVF C AYV    Q R KLD KS    F+GY ED   YR+++ ENK +  SR++ F
Sbjct:  422 MCEDCIFGKQKRVSFQKGGRTPKKERLELVHSDVWGPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVENETGLKIKKLRTDNGGEYEDTRFKRFCYEHGIRMERTVPGTPQQNGVAERMNRTLTERARSMRVQSGLPKQFWAETVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRLWDDENKKMIRSRDVIF 671          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22188.5888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A2WSU7_HIBSY2.030e-5541.60Integrase catalytic domain-containing protein n=2 ... [more]
A0A4Y1RF43_PRUDU4.850e-5440.80Transposable element protein n=4 Tax=Prunus dulcis... [more]
UPI000A29CC5E1.750e-5239.20uncharacterized protein LOC110224828 n=1 Tax=Arabi... [more]
Q9M197_ARATH2.520e-5239.20Copia-type reverse transcriptase-like protein n=6 ... [more]
A0A6A2WXP0_HIBSY4.930e-5241.56Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
V9H0W6_ARATH9.410e-5240.61Lectin receptor kinase (Fragment) n=1 Tax=Arabidop... [more]
A0A5H2Y9D5_PRUDU3.170e-5140.80Integrase catalytic domain-containing protein n=4 ... [more]
A0A2K3L574_TRIPR3.570e-5139.36Copia-type reverse transcriptase-like protein (Fra... [more]
A0A5N6M7D6_9ASTR4.380e-5138.40Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A151RCJ0_CAJCA7.040e-5140.80Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22188contigH-paniculata_contig22188:65..811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size747
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22188.5888.1prot_H-paniculata_contig22188.5888.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22188 446..640 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.099548-UTR-H-paniculata_contig22188:64..4451622929613.099548-UTR-H-paniculata_contig22188:64..445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22188 65..445 -
1691480935.5694127-UTR-H-paniculata_contig22188:64..4451691480935.5694127-UTR-H-paniculata_contig22188:64..445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22188 65..445 -
1622929613.1268764-UTR-H-paniculata_contig22188:640..8111622929613.1268764-UTR-H-paniculata_contig22188:640..811Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22188 641..811 -
1691480935.5919263-UTR-H-paniculata_contig22188:640..8111691480935.5919263-UTR-H-paniculata_contig22188:640..811Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22188 641..811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.1126804-CDS-H-paniculata_contig22188:445..6401622929613.1126804-CDS-H-paniculata_contig22188:445..640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22188 446..640 -
1691480935.5825477-CDS-H-paniculata_contig22188:445..6401691480935.5825477-CDS-H-paniculata_contig22188:445..640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22188 446..640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22188.5888.1

>prot_H-paniculata_contig22188.5888.1 ID=prot_H-paniculata_contig22188.5888.1|Name=mRNA_H-paniculata_contig22188.5888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MRRVYALRHKSEALWALKQFEGNIAKANGLHIKRLPSDEGGEFTGEAFRP
FCAESGIKQEFSVT*
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mRNA from alignment at H-paniculata_contig22188:65..811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22188.5888.1 ID=mRNA_H-paniculata_contig22188.5888.1|Name=mRNA_H-paniculata_contig22188.5888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=747bp|location=Sequence derived from alignment at H-paniculata_contig22188:65..811- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGTTCAGCGTGTGAGCGAGGGAAGGCATCGAAGCAACCGGTAAAGAA GTATCGGGGCGAGCAGACAACGGAGCGACTGGAGCTAGTGCATACTGACA TCGCAGGGCCGACAGACAAGTCTTTCGAGGGACGCCGTTTCGCCATTATC TTCGTGGACGACTGCAGTTGAATGCGTAGGGTCTACGCCCTCAGACATAA ATCAGAGGCGTTATGGGCTCTGAAACAGTTCGAGGGGAACATCGCGAAGG CAAACGGGCTACATATAAAACGTCTTCCGTCAGACGAAGGAGGAGAGTTT ACAGGAGAAGCGTTCCGACCGTTTTGTGCGGAAAGTGGCATCAAGCAAGA GTTTTCTGTCACCTAGACGCCTCAGTCATACGGTGTGGCAGAGCGCAGCT GGCGTAGCGTTTTCGAGATGACCCAAAGTAAGATGGTCACAGCCGACATG GGTCGCAGGTACTGAGGGGAGGCCGCGCGCGCGGCTGTGTACTGCTTAAA TCGCGCCCCGACGCGACCGCACAACGGAGGGATGCCGTATGAGAAATGGT ACGGCACGACACCAAAGCTTGACCACCTTCGTGTCTTTAGCTGCACGGCG TACGTGATGTTCCAGTCGCAGTAGAGACGCAAACTCGATGACAAATCATG GGTGAGGGTGTTTCTGGGGTACGACGAAGACAGCCCGAGTTATCGCATAT ACAACCGGGAAAACAAGAGCGTCCAGTTGAGCAGGAACATAAGATTT
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Coding sequence (CDS) from alignment at H-paniculata_contig22188:65..811-

>mRNA_H-paniculata_contig22188.5888.1 ID=mRNA_H-paniculata_contig22188.5888.1|Name=mRNA_H-paniculata_contig22188.5888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig22188:65..811- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTAGGGTCTACGCCCTCAGACATAAATCAGAGGCGTTATGGGCTCT
GAAACAGTTCGAGGGGAACATCGCGAAGGCAAACGGGCTACATATAAAAC
GTCTTCCGTCAGACGAAGGAGGAGAGTTTACAGGAGAAGCGTTCCGACCG
TTTTGTGCGGAAAGTGGCATCAAGCAAGAGTTTTCTGTCACCTAGATGCG
TAGGGTCTACGCCCTCAGACATAAATCAGAGGCGTTATGGGCTCTGAAAC
AGTTCGAGGGGAACATCGCGAAGGCAAACGGGCTACATATAAAACGTCTT
CCGTCAGACGAAGGAGGAGAGTTTACAGGAGAAGCGTTCCGACCGTTTTG
TGCGGAAAGTGGCATCAAGCAAGAGTTTTCTGTCACCTAG
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