mRNA_H-paniculata_contig22180.5885.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22180.5885.1
Unique NamemRNA_H-paniculata_contig22180.5885.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Match: D7FJ92_ECTSI (ER membrane protein complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ92_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 9.820e-31
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:   46 QVVEGVDRVLTEPTGLESTSLVLALGLDLFGCRVAPSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQW 282
            +V+E VDRVLTEPTGLESTSLVLALGLD+FG RVAPSKTYD LDPNFNYALL LVL AM+ AV V+ R++A KRL +QW
Sbjct:  984 KVIERVDRVLTEPTGLESTSLVLALGLDIFGARVAPSKTYDMLDPNFNYALLALVLGAMATAVGVANRLAAHKRLSEQW 1062
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BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Match: A0A388K3P2_CHABU (ER membrane protein complex subunit 1 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K3P2_CHABU)

HSP 1 Score: 91.7 bits (226), Expect = 3.380e-21
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 DYLLLPPCRHPAHQIQVVEGVDRVLTEPTGLESTSLVLALGLDLFGCRVAPSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQW 282
            D L +PP  H  H  QV+ G+  ++T PT LEST LV A G+DLF  R APSK YD L  +F+YALLV+ +V + IA+LV+G +S ++ L ++W
Sbjct:   91 DTLPIPPQSHLTHGYQVM-GIREIVTLPTRLESTCLVFAHGIDLFFMRTAPSKMYDTLSEDFSYALLVITIVVLLIAILVTGLLSRSQELNNKW 183
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BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Match: A0A2I0W697_9ASPA (ER membrane protein complex subunit 1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W697_9ASPA)

HSP 1 Score: 90.5 bits (223), Expect = 4.020e-19
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 DYLLLPPCRHPAHQIQVVEGVDRVLTEPTGLESTSLVLALGLDLFGCRVAPSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQW 282
            D L + P  +  H +QV EG+  ++T P  LEST+LV A G+DLF  R+APS+TYD L  +FNYALL++ +VA+  A+LV+  +S  K L+D+W
Sbjct:  890 DTLPIIPQSYVTHSLQV-EGIRGIVTIPAKLESTTLVFAYGVDLFFTRIAPSRTYDSLTEDFNYALLLITIVALVAAILVTWVLSEKKELRDRW 982
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BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Match: A0A7J7NBD9_9MAGN (ER membrane protein complex subunit 1 n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NBD9_9MAGN)

HSP 1 Score: 89.7 bits (221), Expect = 7.490e-19
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 DYLLLPPCRHPAHQIQVVEGVDRVLTEPTGLESTSLVLALGLDLFGCRVAPSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQW 282
            D L + P  +  H +QV EG+  +L  P  LESTSLV A G+DLF  R+APS+TYD L  +FNYALL++ +VA+ +A+ V+  +S  K L+++W
Sbjct:  890 DSLPIIPQSYVTHSLQV-EGLRHILAVPAKLESTSLVFAYGVDLFFTRIAPSRTYDSLTEDFNYALLLITIVALIVAIFVTWVLSEKKELREKW 982
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BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Match: UPI0010A36D7D (L-gulonolactone oxidase 3-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A36D7D)

HSP 1 Score: 88.6 bits (218), Expect = 1.820e-18
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:   52 VEGVDRVLTEPTGLESTSLVLALGLDLFGCRVAPSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQW 282
            VEG+ R++T P  LESTSLV A G+DLF  R+APS+TYD L  +FNYALL++ +VA+  A+ V+  +S  K L+D+W
Sbjct:  493 VEGLRRIITVPAKLESTSLVFAYGVDLFFTRIAPSRTYDSLTEDFNYALLLITIVALVAAIFVTWVLSERKELQDKW 569
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BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Match: UPI0010A357E0 (ER membrane protein complex subunit 1-like n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A357E0)

HSP 1 Score: 88.6 bits (218), Expect = 1.910e-18
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:   52 VEGVDRVLTEPTGLESTSLVLALGLDLFGCRVAPSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQW 282
            VEG+ R++T P  LESTSLV A G+DLF  R+APS+TYD L  +FNYALL++ +VA+  A+ V+  +S  K L+D+W
Sbjct:  910 VEGLRRIITVPAKLESTSLVFAYGVDLFFTRIAPSRTYDSLTEDFNYALLLITIVALVAAIFVTWVLSERKELQDKW 986
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BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Match: A0A0K9Q1W9_ZOSMR (ER membrane protein complex subunit 1 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9Q1W9_ZOSMR)

HSP 1 Score: 87.8 bits (216), Expect = 3.530e-18
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 DYLLLPPCRHPAHQIQVVEGVDRVLTEPTGLESTSLVLALGLDLFGCRVAPSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQW 282
            D L + P  +  H +QV EG+  ++T P  LEST+LV   G+DLF  R+APS+TYD L  +FNYALL++ +VA+  A++V+  ++  K L+D+W
Sbjct:  767 DSLPIIPQSYATHSLQV-EGLRNIITVPAKLESTTLVFGYGIDLFFTRIAPSRTYDSLTEDFNYALLLITIVALIAAIIVTWVLTEQKDLRDKW 859
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BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Match: A0A251U7I1_HELAN (ER membrane protein complex subunit 1 n=4 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251U7I1_HELAN)

HSP 1 Score: 87.8 bits (216), Expect = 3.550e-18
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 DYLLLPPCRHPAHQIQVVEGVDRVLTEPTGLESTSLVLALGLDLFGCRVAPSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQW 282
            D L + P  +  H  +V EG+  + T P  LESTSLV A G+DLF  R+APSKTYD L  +FNYALL+L +VA+ IA+ V+  +S  K L+D+W
Sbjct:  890 DALPIIPQSYVTHAFKV-EGLRGIETIPAKLESTSLVFAYGVDLFYTRIAPSKTYDSLTEDFNYALLLLTIVALVIAIFVTWVLSERKDLQDKW 982
[Close]
BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Match: B9RS37_RICCO (ER membrane protein complex subunit 1 n=2 Tax=Ricinus communis TaxID=3988 RepID=B9RS37_RICCO)

HSP 1 Score: 87.8 bits (216), Expect = 3.550e-18
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 DYLLLPPCRHPAHQIQVVEGVDRVLTEPTGLESTSLVLALGLDLFGCRVAPSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQW 282
            D L + P  +  H +QV EG+  ++T P  LEST+LV A G+DLF  R+APS+TYD L  +F+YALL+L +VA+ +A+  +  +S  K L+D+W
Sbjct:  890 DSLPIMPQSYVTHALQV-EGLRGIITVPAKLESTTLVFAYGVDLFFTRIAPSRTYDSLTEDFSYALLLLTIVALVVAIFATWILSEKKELRDKW 982
[Close]
BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Match: A0A1S4BHD6_TOBAC (ER membrane protein complex subunit 1 n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S4BHD6_TOBAC)

HSP 1 Score: 87.0 bits (214), Expect = 6.620e-18
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 DYLLLPPCRHPAHQIQVVEGVDRVLTEPTGLESTSLVLALGLDLFGCRVAPSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQW 282
            D L + P  +  H ++V EG+  ++T P  LEST+LV A G+DLF  R+APSKTYD L  +FNYALL+L +VA+ IA+ V+   S  K L+++W
Sbjct:  888 DSLPIMPQAYVTHALKV-EGLKSIITIPAKLESTTLVFAHGVDLFFTRLAPSKTYDSLTEDFNYALLLLTIVALVIAIFVTWIWSERKELQEKW 980
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22180.5885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ92_ECTSI9.820e-3177.22ER membrane protein complex subunit 1 n=2 Tax=Ecto... [more]
A0A388K3P2_CHABU3.380e-2148.94ER membrane protein complex subunit 1 n=1 Tax=Char... [more]
A0A2I0W697_9ASPA4.020e-1947.87ER membrane protein complex subunit 1 n=2 Tax=Dend... [more]
A0A7J7NBD9_9MAGN7.490e-1946.81ER membrane protein complex subunit 1 n=1 Tax=King... [more]
UPI0010A36D7D1.820e-1853.25L-gulonolactone oxidase 3-like n=1 Tax=Prosopis al... [more]
UPI0010A357E01.910e-1853.25ER membrane protein complex subunit 1-like n=2 Tax... [more]
A0A0K9Q1W9_ZOSMR3.530e-1844.68ER membrane protein complex subunit 1 n=1 Tax=Zost... [more]
A0A251U7I1_HELAN3.550e-1850.00ER membrane protein complex subunit 1 n=4 Tax=Heli... [more]
B9RS37_RICCO3.550e-1845.74ER membrane protein complex subunit 1 n=2 Tax=Rici... [more]
A0A1S4BHD6_TOBAC6.620e-1847.87ER membrane protein complex subunit 1 n=5 Tax=Nico... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22180contigH-paniculata_contig22180:1979..2266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.4e-25
Seed eggNOG ortholog2880.D7FJ92
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130
KEGG ModuleM00135
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsKOG2103@1,KOG2103@2759
EC1.2.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929612.2422736-CDS-H-paniculata_contig22180:1978..22661622929612.2422736-CDS-H-paniculata_contig22180:1978..2266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22180 1979..2266 -
1691480935.4389887-CDS-H-paniculata_contig22180:1978..22661691480935.4389887-CDS-H-paniculata_contig22180:1978..2266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22180 1979..2266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22180.5885.1prot_H-paniculata_contig22180.5885.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22180 1979..2266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22180.5885.1

>prot_H-paniculata_contig22180.5885.1 ID=prot_H-paniculata_contig22180.5885.1|Name=mRNA_H-paniculata_contig22180.5885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
DYLLLPPCRHPAHQIQVVEGVDRVLTEPTGLESTSLVLALGLDLFGCRVA
PSKTYDKLDPNFNYALLVLVLVAMSIAVLVSGRMSATKRLKDQWT*
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mRNA from alignment at H-paniculata_contig22180:1979..2266-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22180.5885.1 ID=mRNA_H-paniculata_contig22180.5885.1|Name=mRNA_H-paniculata_contig22180.5885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at H-paniculata_contig22180:1979..2266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTACCTCCTCCTTCCCCCCTGTCGTCACCCCGCGCACCAAATCCAGGT
GGTAGAAGGGGTGGACCGGGTGCTGACGGAGCCAACAGGACTCGAGTCCA
CCTCACTGGTGCTAGCGCTGGGGTTAGACCTCTTCGGGTGCAGGGTAGCC
CCGTCTAAGACGTACGACAAGCTCGACCCAAACTTTAACTACGCCCTCCT
GGTGCTTGTATTAGTGGCCATGTCTATCGCGGTCTTGGTATCTGGCCGTA
TGTCGGCTACCAAGCGACTGAAAGACCAGTGGACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22180:1979..2266-

>mRNA_H-paniculata_contig22180.5885.1 ID=mRNA_H-paniculata_contig22180.5885.1|Name=mRNA_H-paniculata_contig22180.5885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig22180:1979..2266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTACCTCCTCCTTCCCCCCTGTCGTCACCCCGCGCACCAAATCCAGGT
GGTAGAAGGGGTGGACCGGGTGCTGACGGAGCCAACAGGACTCGAGTCCA
CCTCACTGGTGCTAGCGCTGGGGTTAGACCTCTTCGGGTGCAGGGTAGCC
CCGTCTAAGACGTACGACAAGCTCGACCCAAACTTTAACTACGCCCTCCT
GGTGCTTGTATTAGTGGCCATGTCTATCGCGGTCTTGGTATCTGGCCGTA
TGTCGGCTACCAAGCGACTGAAAGACCAGTGGACGTGAGACTACCTCCTC
CTTCCCCCCTGTCGTCACCCCGCGCACCAAATCCAGGTGGTAGAAGGGGT
GGACCGGGTGCTGACGGAGCCAACAGGACTCGAGTCCACCTCACTGGTGC
TAGCGCTGGGGTTAGACCTCTTCGGGTGCAGGGTAGCCCCGTCTAAGACG
TACGACAAGCTCGACCCAAACTTTAACTACGCCCTCCTGGTGCTTGTATT
AGTGGCCATGTCTATCGCGGTCTTGGTATCTGGCCGTATGTCGGCTACCA
AGCGACTGAAAGACCAGTGGACGTGA
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