mRNA_H-paniculata_contig22180.5884.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22180.5884.1
Unique NamemRNA_H-paniculata_contig22180.5884.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22180.5884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22180contigH-paniculata_contig22180:878..1450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size573
Cds size342
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.7895122-CDS-H-paniculata_contig22180:877..12191622929611.7895122-CDS-H-paniculata_contig22180:877..1219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22180 878..1219 +
1691480935.421073-CDS-H-paniculata_contig22180:877..12191691480935.421073-CDS-H-paniculata_contig22180:877..1219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22180 878..1219 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.809789-UTR-H-paniculata_contig22180:1219..14501622929611.809789-UTR-H-paniculata_contig22180:1219..1450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22180 1220..1450 +
1691480935.4295106-UTR-H-paniculata_contig22180:1219..14501691480935.4295106-UTR-H-paniculata_contig22180:1219..1450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22180 1220..1450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22180.5884.1prot_H-paniculata_contig22180.5884.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22180 878..1219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22180.5884.1

>prot_H-paniculata_contig22180.5884.1 ID=prot_H-paniculata_contig22180.5884.1|Name=mRNA_H-paniculata_contig22180.5884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MQSRPTACGSTNRVVLNIGNFFLFSWLLFFCVFLPILPPRIFRNFKNETQ
HFRLRYSLPPFSSFFSSSSDIISACYRQKDKQEREAIEKGNNTPTSRMPL
IRNSTVSTCHNRR*
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mRNA from alignment at H-paniculata_contig22180:878..1450+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22180.5884.1 ID=mRNA_H-paniculata_contig22180.5884.1|Name=mRNA_H-paniculata_contig22180.5884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at H-paniculata_contig22180:878..1450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAGCCGACCGACTGCTTGCGGCAGCACAAATAGGGTCGTTCTAAA
CATCGGTAATTTTTTCCTTTTTTCTTGGCTTCTCTTTTTCTGTGTTTTTT
TGCCAATATTACCTCCTCGAATATTCCGAAATTTCAAAAACGAGACACAA
CATTTCCGCCTACGGTATTCCCTACCCCCCTTTTCGAGTTTTTTTTCATC
ATCTTCCGACATAATCTCAGCGTGTTATCGGCAAAAAGATAAACAAGAAA
GAGAAGCGATTGAAAAAGGGAACAACACACCCACGTCAAGAATGCCCCTT
ATTCGCAATTCCACGGTTTCCACATGCCACAATCGCCGCTAAATTATCGA
CGTGTGTCAATAGACGAACGTTTATCGCGACCAATCAACTAAATGTAACC
CATCAAGAAAAATCTATCACCGAGATTCTGTCGCATTGTGAGCTGTGGTA
GCGTCTGAAATCCTGCAAGGTAGATGGTAGGTACTCGAGTATGGCGAGTT
GATTAAAGAAAAATCACTTTCCCCCCCCCCCTGAAGTGATCAAAATATCG
ACACAAAAATGAGACAGGTAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig22180:878..1450+

>mRNA_H-paniculata_contig22180.5884.1 ID=mRNA_H-paniculata_contig22180.5884.1|Name=mRNA_H-paniculata_contig22180.5884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig22180:878..1450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAGCCGACCGACTGCTTGCGGCAGCACAAATAGGGTCGTTCTAAA
CATCGGTAATTTTTTCCTTTTTTCTTGGCTTCTCTTTTTCTGTGTTTTTT
TGCCAATATTACCTCCTCGAATATTCCGAAATTTCAAAAACGAGACACAA
CATTTCCGCCTACGGTATTCCCTACCCCCCTTTTCGAGTTTTTTTTCATC
ATCTTCCGACATAATCTCAGCGTGTTATCGGCAAAAAGATAAACAAGAAA
GAGAAGCGATTGAAAAAGGGAACAACACACCCACGTCAAGAATGCCCCTT
ATTCGCAATTCCACGGTTTCCACATGCCACAATCGCCGCTAAATGCAGAG
CCGACCGACTGCTTGCGGCAGCACAAATAGGGTCGTTCTAAACATCGGTA
ATTTTTTCCTTTTTTCTTGGCTTCTCTTTTTCTGTGTTTTTTTGCCAATA
TTACCTCCTCGAATATTCCGAAATTTCAAAAACGAGACACAACATTTCCG
CCTACGGTATTCCCTACCCCCCTTTTCGAGTTTTTTTTCATCATCTTCCG
ACATAATCTCAGCGTGTTATCGGCAAAAAGATAAACAAGAAAGAGAAGCG
ATTGAAAAAGGGAACAACACACCCACGTCAAGAATGCCCCTTATTCGCAA
TTCCACGGTTTCCACATGCCACAATCGCCGCTAA
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