mRNA_H-paniculata_contig22177.5881.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22177.5881.1
Unique NamemRNA_H-paniculata_contig22177.5881.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22177.5881.1 vs. uniprot
Match: D7FXL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 7.990e-17
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 GAELVVIQGVLQGNVQAVCVDIERGAQVKGTVECEAARVNGAFHGELVSSQSLH 162
            GAELVVI+G  +G V A C+DIE+GA+V+GT+ECEAARVNG F G  +SS SLH
Sbjct:   49 GAELVVIRGCFEGKVTAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLH 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22177.5881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXL1_ECTSI7.990e-1766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22177contigH-paniculata_contig22177:2135..2296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-28_002120.1
Exons1
Model size163
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.501866-CDS-H-paniculata_contig22177:2134..22961622929611.501866-CDS-H-paniculata_contig22177:2134..2296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22177 2135..2296 +
1691480935.2888758-CDS-H-paniculata_contig22177:2134..22961691480935.2888758-CDS-H-paniculata_contig22177:2134..2296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22177 2135..2296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22177.5881.1prot_H-paniculata_contig22177.5881.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22177 2135..2296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22177.5881.1

>prot_H-paniculata_contig22177.5881.1 ID=prot_H-paniculata_contig22177.5881.1|Name=mRNA_H-paniculata_contig22177.5881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
GAELVVIQGVLQGNVQAVCVDIERGAQVKGTVECEAARVNGAFHGELVSS
QSLH
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mRNA from alignment at H-paniculata_contig22177:2135..2296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22177.5881.1 ID=mRNA_H-paniculata_contig22177.5881.1|Name=mRNA_H-paniculata_contig22177.5881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig22177:2135..2296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCCGAGTTGGTGGTCATTCAGGGGGTACTCCAAGGAAACGTTCAGGC
GGTGTGCGTAGACATCGAGCGGGGTGCGCAAGTGAAGGGCACCGTGGAGT
GTGAAGCGGCTCGCGTGAACGGCGCGTTTCACGGGGAGTTGGTGTCATCT
CAGTCTCTACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig22177:2135..2296+

>mRNA_H-paniculata_contig22177.5881.1 ID=mRNA_H-paniculata_contig22177.5881.1|Name=mRNA_H-paniculata_contig22177.5881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig22177:2135..2296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCCGAGTTGGTGGTCATTCAGGGGGTACTCCAAGGAAACGTTCAGGC
GGTGTGCGTAGACATCGAGCGGGGTGCGCAAGTGAAGGGCACCGTGGAGT
GTGAAGCGGCTCGCGTGAACGGCGCGTTTCACGGGGAGTTGGTGTCATCT
CAGTCTCTACACGGAGCCGAGTTGGTGGTCATTCAGGGGGTACTCCAAGG
AAACGTTCAGGCGGTGTGCGTAGACATCGAGCGGGGTGCGCAAGTGAAGG
GCACCGTGGAGTGTGAAGCGGCTCGCGTGAACGGCGCGTTTCACGGGGAG
TTGGTGTCATCTCAGTCTCTACAC
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