mRNA_H-paniculata_contig22176.5880.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22176.5880.1
Unique NamemRNA_H-paniculata_contig22176.5880.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22176.5880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22176contigH-paniculata_contig22176:3011..3721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size711
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22176.5880.1prot_H-paniculata_contig22176.5880.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22176 3054..3293 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.4166453-UTR-H-paniculata_contig22176:3010..30531622929611.4166453-UTR-H-paniculata_contig22176:3010..3053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22176 3011..3053 +
1691480935.2650106-UTR-H-paniculata_contig22176:3010..30531691480935.2650106-UTR-H-paniculata_contig22176:3010..3053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22176 3011..3053 +
1622929611.4472332-UTR-H-paniculata_contig22176:3293..37211622929611.4472332-UTR-H-paniculata_contig22176:3293..3721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22176 3294..3721 +
1691480935.2810612-UTR-H-paniculata_contig22176:3293..37211691480935.2810612-UTR-H-paniculata_contig22176:3293..3721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22176 3294..3721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.4332318-CDS-H-paniculata_contig22176:3053..32931622929611.4332318-CDS-H-paniculata_contig22176:3053..3293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22176 3054..3293 +
1691480935.273534-CDS-H-paniculata_contig22176:3053..32931691480935.273534-CDS-H-paniculata_contig22176:3053..3293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22176 3054..3293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22176.5880.1

>prot_H-paniculata_contig22176.5880.1 ID=prot_H-paniculata_contig22176.5880.1|Name=mRNA_H-paniculata_contig22176.5880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MNMWARNDSILDDKMSALKVPDDHGFSAPGYKAVVENDGVMLQESLDISA
ELSAFVGMRDAADGDHWFNMFFFTVCYPL*
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mRNA from alignment at H-paniculata_contig22176:3011..3721+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22176.5880.1 ID=mRNA_H-paniculata_contig22176.5880.1|Name=mRNA_H-paniculata_contig22176.5880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=711bp|location=Sequence derived from alignment at H-paniculata_contig22176:3011..3721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGCACACTGTGGGAAACTTGTTTCGCACGCCGTTAATGAGATGAACA
TGTGGGCCCGTAACGATAGCATACTCGATGATAAAATGAGCGCCCTTAAG
GTACCCGATGACCATGGCTTCAGCGCCCCCGGGTACAAGGCTGTCGTTGA
GAATGATGGGGTCATGCTACAGGAGTCGCTTGACATCTCCGCGGAACTTT
CGGCGTTTGTGGGTATGAGGGATGCGGCAGATGGGGATCACTGGTTTAAC
ATGTTTTTTTTTACGGTATGTTATCCGCTTTAGTAGGGTTGGGTAGAGGC
AAAGTTTGCGCGGGTGGTGGTGGTGGTGTTTAGGTGGGGTAGGTTGGGTT
GGGTTTTTGTAGGGCGTACTGCATATTCCAGAGGTGGCAGTAATTTTATT
GTGAGTATCTGTTACATATCGCTGGAACCCGAATATTTGAGGACAATGAC
GACGGCGATAACGAGATTGTCCGCGATCAATGTTTCTCACGGGCGCCGGG
ACAATGATAACGGCGATGACCTTCAAAGATATTAAGTACTTCAACATGAA
CATTTTTTTGTCGTCTTTGAATGTATCGTACGTGACCGCATTGACCATGA
CGTTCGTCCAAGCCATCGTGTGCGGAGAACTGCCGTCGAATGAGCGAGTT
GTGGCTAGCGTTTCAAGTTTTGGCCCCACCAGCGCTGCATTACCGTTAGC
GGTGATATGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22176:3011..3721+

>mRNA_H-paniculata_contig22176.5880.1 ID=mRNA_H-paniculata_contig22176.5880.1|Name=mRNA_H-paniculata_contig22176.5880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig22176:3011..3721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACATGTGGGCCCGTAACGATAGCATACTCGATGATAAAATGAGCGC
CCTTAAGGTACCCGATGACCATGGCTTCAGCGCCCCCGGGTACAAGGCTG
TCGTTGAGAATGATGGGGTCATGCTACAGGAGTCGCTTGACATCTCCGCG
GAACTTTCGGCGTTTGTGGGTATGAGGGATGCGGCAGATGGGGATCACTG
GTTTAACATGTTTTTTTTTACGGTATGTTATCCGCTTTAGATGAACATGT
GGGCCCGTAACGATAGCATACTCGATGATAAAATGAGCGCCCTTAAGGTA
CCCGATGACCATGGCTTCAGCGCCCCCGGGTACAAGGCTGTCGTTGAGAA
TGATGGGGTCATGCTACAGGAGTCGCTTGACATCTCCGCGGAACTTTCGG
CGTTTGTGGGTATGAGGGATGCGGCAGATGGGGATCACTGGTTTAACATG
TTTTTTTTTACGGTATGTTATCCGCTTTAG
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