mRNA_H-paniculata_contig22176.5879.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22176.5879.1
Unique NamemRNA_H-paniculata_contig22176.5879.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 1.520e-92
Identity = 171/319 (53.61%), Postives = 202/319 (63.32%), Query Frame = 2
Query:  845 VSGALTEEEAKTAVIVYMDGSFCDQLHGFAYSYFFP------------S*GKGMRLIMVHVITRHGPLTTLDDKGVSITEGWFKPKAKGNGKQ---PMGTEKTAEMLW*AKQAIGDYRAAMTDKIFMGWLENRLEPAFKAAFPEKKD----DSCSRHR----IVPI*H*GRAA*KSTLRRTIQHCCTSTTP*ISRFGVERTVKVDRKLVVVQFFLKVP*GGLFSNSNSECGDGVSGTEVAVAIRAFFQLKFPDMILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKRTMKQVWEQVRKGWYRD 1732
            +S ALT+EE + AVIVYMD SFC QLHG AYSYF              + GKG+R+IMVH IT+ G L  +D+    I EGWFKPK KG G+Q    MGTE+TAEMLW AK+A GDY  AMTDK+FM WLE RL PAFKA +  KK     D+ S H      V +         + L R  ++ C   T       VER V     +   ++  +VP  G F  +NS+CG GVSG EVA+A RAFFQLK P  ++EKVE FM  +G QLIWTPPYMPSFQP E LFWQHGKQYVSFN +TKRTM +VW QVRKGWY D
Sbjct:  252 MSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNFPIPEGWFKPKDKGKGRQGAGSMGTEETAEMLWQAKRATGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLR--KYKCRKIT-------VEREVTSSAGVRSKKYTFQVPATGTFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIE-LFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGD 560          
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.090e-66
Identity = 153/318 (48.11%), Postives = 181/318 (56.92%), Query Frame = 2
Query:  854 ALTEEEAKTAVIVYMDGSFCDQLHGFAYSYFFPS*-------------GKGMRLIMVHVITRHGPLTTLDDKGVSITEGWFKPKAKGNGKQPMGTEKTAEMLW*AKQAIGDYRAAMTDKIFMGWLENRLEPAFKAAFPEKKD-------DSCSRHRIVPI*H*GRAA*KSTLRRTIQHCCTSTTP*ISRFGVERTVKVDRK---LVVVQFFLKVP*--GGLFSNSNSECGDGVSGTEVAVAIRAFFQLKFPDMILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKRTMKQVWEQVRKGWYRD 1732
            A   E+A  AVIVYMD SF  Q HG  YSY FPS              GKG+R+IMVH IT+ GPL  L D G+ I EGWFK    G+GK+ M  E+TAE LW AK A GDY AAMTD +FM WLE+RL PA+ A  PE K        D+ S H      H   A  K     T +H        +  FG  ++++V RK     VV++ L+VP   G  F   N E   GVS  EVA A R +  L  P+ + E+V  FM  KG  LIWTPPYMPSFQP E LFWQHGKQYVS   E KR M++VW Q+RKGWY D
Sbjct:  140 AKRAEDAGLAVIVYMDESFVHQAHGSPYSY-FPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GLPIEEGWFKET--GSGKKEMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNA-IPEFKGKRMILVLDNASYH------HGFDAEVKVPESNTKKH----NVDLLRMFGA-KSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIE-LFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGD 438          
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 1.580e-65
Identity = 149/318 (46.86%), Postives = 179/318 (56.29%), Query Frame = 2
Query:  854 ALTEEEAKTAVIVYMDGSFCDQLHGFAYSYFFPS*-------------GKGMRLIMVHVITRHGPLTTLDDKGVSITEGWFKPKAKGNGKQPMGTEKTAEMLW*AKQAIGDYRAAMTDKIFMGWLENRLEPAFKAAFPEKKD-------DSCSRHRIVPI*H*GRAA*KSTLRRTIQHCCTSTTP*ISRFGVERTVKVDRK-----LVVVQFFLKVP*GGLFSNSNSECGDGVSGTEVAVAIRAFFQLKFPDMILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKRTMKQVWEQVRKGWYRD 1732
            A   E+A  AVIVY+DGSF  Q HG  YSY FP+              GKG+R+IMVH IT+ GPL  L   G+ I EGWFK    G+GK+ M  E+TAE LW AK A GDY AAMTD +FM WLE+RL PA+ A  PE K        D+ S H      H   A  K     T +H        +  FG  ++++V RK     +V   F +    G  F   N E   GVS  EVA A R +  L  P+ + E+V  FM  KGL LIWTPPYMPSFQP E LFWQHGKQYVS N E KR +++VW Q+RKGWY D
Sbjct:  152 AKRAEDAGLAVIVYIDGSFVHQAHGSPYSY-FPADEDEVVQDGIGRTTGKGLRVIMVHAITKWGPLAKLC-VGLPIEEGWFKET--GSGKREMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNA-IPEFKGKRMILVLDNASYH------HGFDAEVKVPETNTKKH----NVDLLRMFGA-KSIRVKRKEGEQGVVEENFEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGLALIWTPPYMPSFQPIE-LFWQHGKQYVSVNFELKRKVREVWVQIRKGWYGD 450          
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 3.630e-65
Identity = 153/318 (48.11%), Postives = 181/318 (56.92%), Query Frame = 2
Query:  854 ALTEEEAKTAVIVYMDGSFCDQLHGFAYSYFFPS*-------------GKGMRLIMVHVITRHGPLTTLDDKGVSITEGWFKPKAKGNGKQPMGTEKTAEMLW*AKQAIGDYRAAMTDKIFMGWLENRLEPAFKAAFPEKKD-------DSCSRHRIVPI*H*GRAA*KSTLRRTIQHCCTSTTP*ISRFGVERTVKVDRK---LVVVQFFLKVP*--GGLFSNSNSECGDGVSGTEVAVAIRAFFQLKFPDMILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKRTMKQVWEQVRKGWYRD 1732
            A   E+A  AVIVYMD SF  Q HG  YSY FPS              GKG+R+IMVH IT+ GPL  L D G+ I EGWFK    G+GK+ M  E+TAE LW AK A GDY AAMTD +FM WLE+RL PA+ A  PE K        D+ S H      H   A  K     T +H        +  FG  ++++V RK     VV++  +VP   G  F   N E   GVS  EVA A R +  L  P+ + E+V  FM  KG  LIWTPPYMPSFQP E LFWQHGKQYVS N E KR M++VW Q+RKGWY D
Sbjct:  257 AKRAEDAGLAVIVYMDESFVHQAHGSPYSY-FPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GLPIEEGWFKET--GSGKKEMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNA-IPEFKGKRMILVLDNASYH------HGFDAEVKVPETNTKKH----NVDLLRMFGA-KSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIE-LFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGD 555          
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 1.650e-64
Identity = 151/319 (47.34%), Postives = 181/319 (56.74%), Query Frame = 2
Query:  854 ALTEEEAKTAVIVYMDGSFCDQLHGFAYSYFFPS*-------------GKGMRLIMVHVITRHGPLTTLDDKGVSITEGWFKPKAKGNGKQPMGTEKTAEMLW*AKQAIGDYRAAMTDKIFMGWLENRLEPAFKAAFPEKK--------DDSCSRHRIVPI*H*GRAA*KSTLRRTIQHCCTSTTP*ISRFGVERTVKVDRK---LVVVQFFLKVP*--GGLFSNSNSECGDGVSGTEVAVAIRAFFQLKFPDMILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKRTMKQVWEQVRKGWYRD 1732
            A   E+A  AVIVYMD SF  Q HG  YSY FPS              GKG+R+IMVH IT+ GPL  L D G+ I EGWFK    G+GK+ M  E+TAE LW AK A GDY AAMTD +FM WLE+RL PA+ A  PE K        D++   H  V       +  K     T +H        +  FG  ++++V RK     VV++  +VP   G  F   N E   GVS  EVA A R +  L  P+ + E+V  FM  KG  LIWTPPYMPSFQP E LFWQHGKQYVS N E KR M++VW Q+RKGWY D
Sbjct:  267 AKRAEDAGLAVIVYMDESFVHQAHGSPYSY-FPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GLPIEEGWFKET--GSGKKEMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNA-IPEFKGKRMILVLDNASYHHGFV-------SEVKVPETNTKKH----NVDLLRMFGA-KSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIE-LFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGD 565          
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 9.530e-64
Identity = 157/368 (42.66%), Postives = 198/368 (53.80%), Query Frame = 2
Query:  722 TCRTVRKEGYCIGLAIDAVGEELKSPR*TTEEGSYQTVSGRVSGALTE-------EEAKTAVIVYMDGSFCDQLHGFAYSYFFPS*-------------GKGMRLIMVHVITRHGPLTTLDDKGVSITEGWFKPKAKGNGKQPMGTEKTAEMLW*AKQAIGDYRAAMTDKIFMGWLENRLEPAFKAA--FPEKKD----DSCSRHRIVPI*H*GRAA*KSTLRRTIQHCCTSTTP*ISRFGVERTVKVDRK-----LVVVQFFLKVP*GGLFSNSNSECGDGVSGTEVAVAIRAFFQLKFPDMILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKRTMKQVWEQVRKGWYRD 1732
            TC   +     +G  +  +G + +  R  T   + + ++ R+   L E       E+A  AVIVYMD SF  Q HG  YSY FPS              GKG+R+IMVH IT+ GPL    D G  I EGWFK    G+GK+ M  E+TAE LW AK A GDY AAMTD +FM WLE+RL PA+ A   F  KK     D+ S H      H   A  K     T +H        + +FG  ++++V RK      V   F +    G  F   N E   GVS  EVA A R + +L +P+ + E+V  FM+ KG  LIWTPPYMPSFQP E LFWQHGKQYVS N E KR M++VW Q+R+GWY D
Sbjct:  241 TCNMEQPSNRSVGGLLSRLGYKRRRGRIKTPPLNAERLA-RIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSY-FPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKFCD-GFPIEEGWFKET--GSGKKKMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYH------HGFDAEVKVPETNTKKH----NVDLLRKFGA-KSIRVKRKEGEQGFVEHNFEVPSEPGSSFPAGNRE--GGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIE-LFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGD 589          
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 4.610e-63
Identity = 144/337 (42.73%), Postives = 180/337 (53.41%), Query Frame = 2
Query:  812 EEGSYQTVSGRVSGALTEEEAKTAVIVYMDGSFCDQLHGFAYSYFFPS*-------------GKGMRLIMVHVITRHGPLTTLDDKGVSITEGWFKPKAK-------GNGKQPMGTEKTAEMLW*AKQAIGDYRAAMTDKIFMGWLENRLEPAFKAAFPEKKD----DSCSRHRI------VPI*H*GRAA*KSTLRRTIQHCCTSTTP*ISRFGVERTVKVDRKLVVVQFFLKVP*GGLFSNSNSECGDGVSGTEVAVAIRAFFQLKFPDMILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKRTMKQVWEQVRKGWYRD 1732
            EE  +  +  ++  A   E+A  AVIVYMD SF  Q HG AYSY FPS              GKG+R+IMVH IT+HGPL  L + G+ I EGWFK K         G     M  E+TAE LW AK A GDY  AMTD +FM WL++RL PAF A F  KK     D+ S H        VP       + K  +    ++ CTS       F V R    + +    ++  +VP  G   N+N +  +GVS  E+A   R +F+  FP  + EK E +M  KG  LIWTPPYMP+FQP E LFWQHGK YVS + E  R M  VW+Q+R GWY D
Sbjct:   83 EEKPHPPLPVKMDLAKRAEDAGVAVIVYMDESFVHQAHGSAYSY-FPSDDTGVVQDGIGRITGKGLRMIMVHAITKHGPLAELQE-GLPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVP----ETNSKKYNVELLRKYGCTS-------FKVTR----ESEGKAAEYNFEVPAQGSLPNANRK--NGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIE-LFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGD 399          
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 6.950e-63
Identity = 143/302 (47.35%), Postives = 168/302 (55.63%), Query Frame = 2
Query:  896 MDGSFCDQLHGFAYSYFFPS*-------------GKGMRLIMVHVITRHGPLTTLDDKGVSITEGWFKPKAKGNGKQPMGTEKTAEMLW*AKQAIGDYRAAMTDKIFMGWLENRLEPAFKAAFPEKKD-------DSCSRHRIVPI*H*GRAA*KSTLRRTIQHCCTSTTP*ISRFGVERTVKVDRK---LVVVQFFLKVP*GGLFSNSNSECGDGVSGTEVAVAIRAFFQLKFPDMILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKRTMKQVWEQVRKGWYRD 1732
            MD SF  Q HG  YSY FPS              GKG+R+IMVH IT+ GPL  L D G+ I EGWFK    G+GK+ M  E+TAE LW AK A GDY AAMTD +FM WLE+RL PA+ A  PE K        D+ S H      H   A  K     T +H        +  FG  ++++V RK     V  F +    G  F   N E   GVS  EVA A R +  L  P+ + E+V  FM  KG  LIWTPPYMPSFQP E LFWQHGKQYVS N E KR M++VW Q+RKGWY D
Sbjct:    1 MDESFVHQAHGSPYSY-FPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GLPIEEGWFKET--GSGKKEMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLNPAYNA-IPEFKGKRMILVLDNASYH------HGFDAQVKLPESNTKKH----NVDLLRMFGA-KSIRVKRKEGEQGVYNFEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIE-LFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGD 283          
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 1.380e-62
Identity = 145/313 (46.33%), Postives = 171/313 (54.63%), Query Frame = 2
Query:  854 ALTEEEAKTAVIVYMDGSFCDQLHGFAYSYFFPS*G-------------KGMRLIMVHVITRHGPLTTLDDKGVSITEGWFKPKAKGNGKQPMGTEKTAEMLW*AKQAIGDYRAAMTDKIFMGWLENRLEPAFKAAFPEKKD-------DSCSRHRIVPI*H*GRAA*KSTLRRTIQHCCTSTTP*ISRFGVERTVKVDRK---LVVVQFFLKVP*GGLFSNSNSECGDGVSGTEVAVAIRAFFQLKFPDMILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKRTMKQVWEQVRKGW 1723
            A   E+A  AVIVYMD SF  Q HG  YSY FPS               KG+R+IMVH IT+  PL    D G+ I EGWFK    G+G + M  E+TAE LW AK A GDY AAMTD +FM WLE+RL PA+ A  PE K        D+ S H      H   A  K     T +H        +  FG  ++++V RK     V  F +    G  F   N E   GVS  EVA A R +  L  P+ + E+V  FM  KG  LIWTPPYMPSFQP E LFWQHGKQYVS N E KR M++VW Q+RKGW
Sbjct:   40 AKRAEDAGLAVIVYMDESFVHQAHGSPYSY-FPSDKNGVVQDGIGRTTEKGLRMIMVHAITKWEPLAKFCD-GLPIEEGWFKET--GSGTKEMKDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNA-IPEFKGRQMILVLDNASYH------HGFDAEVKVPETNTKKH----NVDLLRMFGA-KSIRVRRKEGEQGVYNFEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIE-LFWQHGKQYVSLNFELKRKMREVWVQIRKGW 333          
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 6.460e-62
Identity = 141/319 (44.20%), Postives = 172/319 (53.92%), Query Frame = 2
Query:  866 EEAKTAVIVYMDGSFCDQLHGFAYSYFFPS*-------------GKGMRLIMVHVITRHGPLTTLDDKGVSITEGWFKPKAK-------GNGKQPMGTEKTAEMLW*AKQAIGDYRAAMTDKIFMGWLENRLEPAFKAAFPEKKD----DSCSRHRI------VPI*H*GRAA*KSTLRRTIQHCCTSTTP*ISRFGVERTVKVDRKLVVVQFFLKVP*GGLFSNSNSECGDGVSGTEVAVAIRAFFQLKFPDMILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKRTMKQVWEQVRKGWYRD 1732
            E+A  AVIVYMD SF  Q HG AYSY FPS              GKG+R+IMVH IT+HGPL  L + G  I EGWFK K         G     M  E+TAE LW AK A GDY  AMTD +FM WL++RL PAF A F  KK     D+ S H        VP       + K  +    ++ CTS       F V R    + +    ++  +VP  G   N+N +  +GVS  E+A   R +F+  FP  + EK E +M  KG  LIWTPPYMP+FQP E LFWQHGK YVS + E  R M  VW+Q+R GWY D
Sbjct:  183 EDAGVAVIVYMDESFVHQAHGSAYSY-FPSDDTGVVQDGIGRTTGKGLRMIMVHAITKHGPLAELQE-GFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVP----ETNSKKYNVELLRKYGCTS-------FKVTR----ESEGKAAEYNFEVPAQGSLPNANRK--NGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIE-LFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGD 481          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22176.5879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI1.520e-9253.61Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KDX7_9PHAE2.090e-6648.11DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKL0_9PHAE1.580e-6546.86DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE3.630e-6548.11DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE1.650e-6447.34DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
D8LNM6_ECTSI9.530e-6442.66DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5LE74_9PHAE4.610e-6342.73Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHE7_9PHAE6.950e-6347.35DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KUM1_9PHAE1.380e-6246.33DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KP14_9PHAE6.460e-6244.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22176contigH-paniculata_contig22176:287..2978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1734
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22176.5879.1prot_H-paniculata_contig22176.5879.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22176 2781..2978 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.3199606-UTR-H-paniculata_contig22176:286..8021622929611.3199606-UTR-H-paniculata_contig22176:286..802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22176 287..802 +
1691480935.2342086-UTR-H-paniculata_contig22176:286..8021691480935.2342086-UTR-H-paniculata_contig22176:286..802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22176 287..802 +
1622929611.3325686-UTR-H-paniculata_contig22176:1762..27801622929611.3325686-UTR-H-paniculata_contig22176:1762..2780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22176 1763..2780 +
1691480935.243005-UTR-H-paniculata_contig22176:1762..27801691480935.243005-UTR-H-paniculata_contig22176:1762..2780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22176 1763..2780 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.3542619-CDS-H-paniculata_contig22176:2780..29781622929611.3542619-CDS-H-paniculata_contig22176:2780..2978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22176 2781..2978 +
1691480935.251314-CDS-H-paniculata_contig22176:2780..29781691480935.251314-CDS-H-paniculata_contig22176:2780..2978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22176 2781..2978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22176.5879.1

>prot_H-paniculata_contig22176.5879.1 ID=prot_H-paniculata_contig22176.5879.1|Name=mRNA_H-paniculata_contig22176.5879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MILEKVEAFMESKGLQLIWTPPYMPSFQPTEQLFWQHGKQYVSFNLETKR
TMKQVWEQVRKGWYRD
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mRNA from alignment at H-paniculata_contig22176:287..2978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22176.5879.1 ID=mRNA_H-paniculata_contig22176.5879.1|Name=mRNA_H-paniculata_contig22176.5879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2692bp|location=Sequence derived from alignment at H-paniculata_contig22176:287..2978+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTGCAGACAATTTCAAGGGCACACGAGAGGGTTAGAGTGCACTTGAT GGTATCAAACGAAAGGTGACGATCGTAGCTTTCGAGCGGTATCAGCCTTA GCGTGAGCAACTTTACACACCGCGCAGCAGTGAGGGACAAACATGGACAC TTCAAAAACATTTTGTCATTTTAGTAGGGAAAAGTGGAAGCTAGCTTTGG AACTAGCGTGCACAATTGATTCCAGGAGAAAGCTGAGAATCTAACGTACA ACATGCACCAGCCTGATTCTCAAAATTCGAAATACTTCGCGTGGTACGCC GCCTTCAGTAGGATCAGTTGAGCTTCAGGCAGGCATGGCACAATAGCTGT GAATAAGCACCAGAGCAACGATGATCCGCGAAGCACGCCGAAGCTTAGAA AGAACGCCAAGGGCAACCTTGACACTGGCAACTTGGTGAAGGTCGTAGAT GCCAAGAAGGCAGCAATCGAAGTGAGGGAGGCCACCGGCGCGGCTGCTGA AGCAGCCAACAAGGCGGTATGTGAGTTGGCCAGAGTTGAGGTAGGGGCTT CAGTCAAAGCTCGAGCAGAGATAGCCACATGTGAGGCGAAGTTTGCCAGC GCTAGGGTAGCATAAGATGAGCGCATGGCAGCATTCGGTGCGCTTGCTGA GCGTTAGGCAAACCTTGACATACAGGAGAAGGTACTGAAGGAACAGGAGC GCTATCGTCTTCGGATGGAAGCACAGCACCGCGAGGTGATTTCGGCTATG GCAGCGGGTGATGAGCTGGCTCCTCACCAGGGATCATTATTAGATACGTG ACAGCCCCGGACTATCCTTTTGGTGTACTTCAATCTCATCCAGTCAGGCA TGGACCGAACCTCCGCTGTAAGGGAGACCGCCAGCGTAATGCGCGTTGGA ACGAAGTAGGTGTTCGAGGCATGTGCCATCTGTAGTGAGTACAGATAGTT CAGGAGAATAGTGAGTAGTGTACAGACACCATTTCGGAACAGTTTTCACA GACGATGTCCAAGTTTTTTACTGTACAGTGCGCCTTGTACTATCTGCGCA AAGAGTATGTGGTGCAGGTGCAAGTGCACTGTTCACTGTCTGTGCAAACA GTGTACTGCACATGCAGTACTGTACTGTCTATTGTGTCCGTTGTGTCTGC AACACAGCGTGAACGTTTTTTTTTCTGCTTGACGACACAGTTTCGGAACA GGTTTTTCAAACATGGTGTCCAAGTTTTTTTTTACTGTACAGTGCGCCTT GTACTGTCTGTCGTGTCGACTTCACTTGACAAAAACTGACCCGGTTGCCC CTCAGCGAAGTAACGTGCTCGATTTTGTGCTCCCCATACTCTGAAGTTGC GGGCACTCCGTATAAAGTGAGAATGTTCAATAGTTTGTACCTTGTTGCGT GTGTCATGTTACGCAGTGCCAATTGTGTTTTGGGAGAAATTGTAACGTTT GCACTTTCCGCCTGTCCGGTGAACAGGTTCGCACTTCATGGGAGGATCAA AAGTCGCTCAAGACAACATGGGCGGAGGGGTGAGGCGTGGAAAATGGAGA AGACGGGCGGACTGTCCTTACAGATCTGCAAACAGCGAAGCTTCGTGCTT TCATCAGCGGCACGCACGAAGACGGGCAGCAAGTTATCCGGGGGACGGTA GGCGAATAGATCAGGGCTGAGTGTGATCACGACATGTCGAACCGTGCGAA AGGAGGGCTATTGTATAGGCTTGGCTATAGACGCCGTCGGGGAAGAATTA AAATCCCCCCGTTAAACGACCGAGGAAGGCTCGTATCAGACAGTTTCTGG TAGAGTTTCTGGCGCTCTTACTGAAGAGGAAGCAAAAACGGCAGTGATTG TGTACATGGATGGGAGTTTTTGCGACCAATTGCATGGCTTTGCCTACTCA TATTTTTTCCCATCCTGAGGAAAGGGTATGCGATTGATCATGGTTCACGT AATAACGAGACACGGACCGCTGACAACTCTTGATGATAAGGGTGTATCTA TCACGGAGGGATGGTTCAAACCTAAGGCTAAGGGGAACGGTAAGCAGCCG ATGGGTACAGAGAAAACCGCGGAGATGCTCTGGTAGGCCAAACAGGCTAT AGGGGATTACCGCGCTGCCATGACCGACAAAATCTTCATGGGGTGGCTCG AGAATCGCCTTGAGCCGGCTTTCAAAGCTGCTTTCCCAGAGAAAAAAGAT GATTCTTGTTCTCGACATCGCATCGTCCCGATATGACACTGAGGTCGGGC TGCCTGAAAATCAACACTAAGACGCACAATACAGCACTGTTGCACAAGTA CAACGCCTTAAATATCACGGTTCGGCGTTGAAAGGACGGTAAAGGTCGAC AGAAAGTTAGTTGTAGTTCAATTTTTTTTAAAAGTACCCTAGGGTGGATT ATTCTCGAACTCGAATTCAGAGTGTGGCGACGGTGTTAGCGGCACGGAGG TAGCGGTTGCCATCCGGGCGTTCTTTCAGCTCAAATTTCCCGACATGATT CTGGAGAAAGTTGAGGCGTTCATGGAGAGCAAAGGTTTGCAACTGATTTG GACACCTCCTTACATGCCGTCTTTTCAGCCAACTGAGCAGCTATTCTGGC AGCACGGAAAGCAGTATGTCAGCTTTAACTTGGAGACAAAGCGTACGATG AAGCAAGTGTGGGAGCAGGTTCGGAAGGGTTGGTATAGGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig22176:287..2978+

>mRNA_H-paniculata_contig22176.5879.1 ID=mRNA_H-paniculata_contig22176.5879.1|Name=mRNA_H-paniculata_contig22176.5879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig22176:287..2978+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTCTGGAGAAAGTTGAGGCGTTCATGGAGAGCAAAGGTTTGCAACT
GATTTGGACACCTCCTTACATGCCGTCTTTTCAGCCAACTGAGCAGCTAT
TCTGGCAGCACGGAAAGCAGTATGTCAGCTTTAACTTGGAGACAAAGCGT
ACGATGAAGCAAGTGTGGGAGCAGGTTCGGAAGGGTTGGTATAGGGATAT
GATTCTGGAGAAAGTTGAGGCGTTCATGGAGAGCAAAGGTTTGCAACTGA
TTTGGACACCTCCTTACATGCCGTCTTTTCAGCCAACTGAGCAGCTATTC
TGGCAGCACGGAAAGCAGTATGTCAGCTTTAACTTGGAGACAAAGCGTAC
GATGAAGCAAGTGTGGGAGCAGGTTCGGAAGGGTTGGTATAGGGAT
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