mRNA_H-paniculata_contig22159.5872.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22159.5872.1
Unique NamemRNA_H-paniculata_contig22159.5872.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Match: D7FL06_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL06_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 3.720e-44
Identity = 79/92 (85.87%), Postives = 86/92 (93.48%), Query Frame = 2 
Query:    2 QESQDYYGTGESFVFSFHPTFDVHRWTGANDYFCISHESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWMFAD 277
            +ESQ YYGTGESFV+SFHP+F  HRWTGANDYFCIS +SWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFF+CL VEVW F++
Sbjct:  673 KESQKYYGTGESFVYSFHPSFKGHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFRCLQVEVWFFSN 764
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BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Match: W7U6I5_9STRA (Oxidation resistance protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6I5_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.160e-30
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 2 
Query:    2 QESQDYYGTGESFVFSFHPTFDVHRWTGANDYFCISHESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWMFAD 277
            Q +  YYGTGESFVF FHP F +++WTG NDYF +S+   LAMGGGGG FAFQ+DDELD G S PSDT+G+ RLSS   FKCL++EVW F D
Sbjct:  189 QNATGYYGTGESFVFKFHPQFTLYKWTGKNDYFILSNAQHLAMGGGGG-FAFQLDDELDTGVSGPSDTYGNTRLSSRHVFKCLSIEVWGFGD 279
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BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Match: A0A4D9DA04_9STRA (TLDc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA04_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.760e-29
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 2 
Query:    2 QESQDYYGTGESFVFSFHPTFDVHRWTGANDYFCISHESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWMFAD 277
            Q +  YYGTGESFVF FHP F +++WTG NDYF +S+   LAMGGGGG FAFQ+DDELD G S PSDT+G+ RLSS   FKCL++EVW F D
Sbjct:  456 QNATGYYGTGESFVFKFHPQFTLYKWTGKNDYFILSNAQHLAMGGGGG-FAFQLDDELDTGVSGPSDTYGNTRLSSRHVFKCLSIEVWGFGD 546
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BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Match: A0A482RX24_9ARCH (TLDc domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX24_9ARCH)

HSP 1 Score: 124 bits (310), Expect = 2.250e-27
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 2 
Query:    2 QESQDYYGTGESFVFSFHPTFDVHRWTGANDYFCISHESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWM 268
            Q+ + YYG+GESFVFS  PT   ++WT  N++F +SH   LAMGGGG GFA QIDDELD G SN SDT+ +P LSSNEFFKCLNVEVW+
Sbjct:  465 QDKKSYYGSGESFVFSVIPTIQAYKWTQKNNFFVLSHTEGLAMGGGGEGFAIQIDDELDTGVSNHSDTYDNPTLSSNEFFKCLNVEVWV 553
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BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Match: A0A7S3LZX6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZX6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.540e-26
Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:    2 QESQDYYGTGESFVFSFHPTFDVHRWTGANDYFCISHESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWM 268
            Q  Q YYG GESFVFS  PT  VH+WTG N+ F +S+    AMGGGG G+A Q+DDELD G SN SDTF +  LSS+EFFKCLNVEVWM
Sbjct:  262 QNKQGYYGNGESFVFSVVPTPRVHKWTGKNELFVLSNPHCFAMGGGGEGYAIQLDDELDTGVSNKSDTFNNNVLSSSEFFKCLNVEVWM 350
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BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Match: A0A7S0G5F9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5F9_9RHOD)

HSP 1 Score: 84.3 bits (207), Expect = 4.100e-16
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 2 
Query:   17 YYGTGESFVFSFHPTFDVHRWTGANDYFCISHESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWMF 271
            YYGTGE FVFS  P F+V RWT +N YF +S+E  LAMGGGG  FA  ID +   G SN S TFG+  L S+  F+C+ +E W F
Sbjct:   42 YYGTGECFVFSVLPKFEVFRWTRSNSYFQLSNEVHLAMGGGGH-FALWIDSDFLHGTSNESQTFGNHCLCSSVEFECVALEAWGF 125
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BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Match: T1L3G8_TETUR (TLDc domain-containing protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1L3G8_TETUR)

HSP 1 Score: 85.1 bits (209), Expect = 9.350e-16
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 2 
Query:    8 SQDYYGTGESFVFSFHPTFDVHRWTGANDYFCISHESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWMF 271
            S  +YGTGE+F+FSF+P F   RWTG N YF       +A G G G F   +D +L  G SNP  TFG+PRLS N+ F    +E W F
Sbjct:  103 SDHFYGTGETFLFSFYPEFRCFRWTGDNVYFIKGDTESIAFGAGDGSFGLWLDGDLYHGSSNPCQTFGNPRLSKNQDFVVKTLECWGF 190
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BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Match: UPI001016C8BE (oxidation resistance protein 1-like n=1 Tax=Xiphophorus couchianus TaxID=32473 RepID=UPI001016C8BE)

HSP 1 Score: 82.8 bits (203), Expect = 1.370e-15
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:    8 SQDYYGTGESFVFSFHPTFDVHRWTGANDYFCISHESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWMF 271
            S  +YGTGE+F+F+F+P F+V++WTG N +F       LA GGG G F   +D +L  G S+   TFG+P LS  E F   ++EVW F
Sbjct:   40 SDGFYGTGETFLFTFNPEFEVYKWTGDNMFFIKGDMDSLAFGGGSGEFGLWLDGDLYHGRSHACKTFGNPMLSKKEDFYVQDIEVWAF 127
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BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Match: A0A8C7JBT5_ONCKI (Oxidation resistance protein 1 n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7JBT5_ONCKI)

HSP 1 Score: 81.6 bits (200), Expect = 2.090e-15
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:    8 SQDYYGTGESFVFSFHPTFDVHRWTGANDYFCISHESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWMF 271
            S+ +YGTGE+F+F+F P F+V++WTG N +F       LA GGG G F   +D +L  G S+   TFG+P LS  E F   ++E+W F
Sbjct:   20 SEGFYGTGETFLFTFCPEFEVYKWTGDNMFFMKGDMDSLAFGGGSGEFGLWLDGDLYHGRSHSCKTFGNPMLSKKEDFYIQDIEIWAF 107
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BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Match: UPI000854A45B (LOW QUALITY PROTEIN: nuclear receptor coactivator 7 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854A45B)

HSP 1 Score: 84.7 bits (208), Expect = 2.450e-15
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 2 
Query:   17 YYGTGESFVFSFHPTFDVHRWTGANDYFCISHESWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWMF 271
            YYGTGE+F+F+F P F   +W+G N YF     + LA+GGGGGGF   +D +L  G SNP  TF +  LS  E F   ++EVW F
Sbjct:  137 YYGTGETFLFTFSPDFKAFKWSGDNSYFINGDIASLALGGGGGGFGLWLDSDLYHGRSNPCSTFNNNVLSKKEDFIVQDIEVWTF 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22159.5872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL06_ECTSI3.720e-4485.87TLDc domain-containing protein n=2 Tax=Ectocarpus ... [more]
W7U6I5_9STRA1.160e-3065.22Oxidation resistance protein 1 n=1 Tax=Nannochloro... [more]
A0A4D9DA04_9STRA6.760e-2965.22TLDc domain-containing protein n=1 Tax=Nannochloro... [more]
A0A482RX24_9ARCH2.250e-2765.17TLDc domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S3LZX6_9STRA2.540e-2665.17Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0G5F9_9RHOD4.100e-1654.12Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
T1L3G8_TETUR9.350e-1647.73TLDc domain-containing protein n=1 Tax=Tetranychus... [more]
UPI001016C8BE1.370e-1545.45oxidation resistance protein 1-like n=1 Tax=Xiphop... [more]
A0A8C7JBT5_ONCKI2.090e-1544.32Oxidation resistance protein 1 n=2 Tax=Oncorhynchu... [more]
UPI000854A45B2.450e-1548.24LOW QUALITY PROTEIN: nuclear receptor coactivator ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22159contigH-paniculata_contig22159:930..3511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.9e-18
Seed eggNOG ortholog2880.D7FL06
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.negative regulation of peptidyl-cysteine S-nitrosylation
EggNOG OGsCOG5142@1,KOG2372@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1180
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22159.5872.1prot_H-paniculata_contig22159.5872.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22159 1815..3384 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929610.4640095-UTR-H-paniculata_contig22159:929..18141622929610.4640095-UTR-H-paniculata_contig22159:929..1814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22159 930..1814 -
1691480934.9972038-UTR-H-paniculata_contig22159:929..18141691480934.9972038-UTR-H-paniculata_contig22159:929..1814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22159 930..1814 -
1622929610.590382-UTR-H-paniculata_contig22159:3384..35111622929610.590382-UTR-H-paniculata_contig22159:3384..3511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22159 3385..3511 -
1691480935.0282087-UTR-H-paniculata_contig22159:3384..35111691480935.0282087-UTR-H-paniculata_contig22159:3384..3511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22159 3385..3511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929610.544043-CDS-H-paniculata_contig22159:1814..18661622929610.544043-CDS-H-paniculata_contig22159:1814..1866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22159 1815..1866 -
1691480935.0093515-CDS-H-paniculata_contig22159:1814..18661691480935.0093515-CDS-H-paniculata_contig22159:1814..1866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22159 1815..1866 -
1622929610.5637813-CDS-H-paniculata_contig22159:3268..33841622929610.5637813-CDS-H-paniculata_contig22159:3268..3384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22159 3269..3384 -
1691480935.0192943-CDS-H-paniculata_contig22159:3268..33841691480935.0192943-CDS-H-paniculata_contig22159:3268..3384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22159 3269..3384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22159.5872.1

>prot_H-paniculata_contig22159.5872.1 ID=prot_H-paniculata_contig22159.5872.1|Name=mRNA_H-paniculata_contig22159.5872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFFKCLNVEVWMFAD
RTVDV*
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mRNA from alignment at H-paniculata_contig22159:930..3511-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22159.5872.1 ID=mRNA_H-paniculata_contig22159.5872.1|Name=mRNA_H-paniculata_contig22159.5872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2582bp|location=Sequence derived from alignment at H-paniculata_contig22159:930..3511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGAGAGTCAAGACTACTACGGCACCGGAGAATCCTTCGTTTTTTCTT
TTCATCCTACCTTCGATGTGCACCGCTGGACGGGCGCGAACGACTACTTC
TGCATCTCCCACGAGTCATGGCTTGCCATGGGAGGTGGCGGCGGTGGATT
CGCGTTCCAGATTGATGACGAGCTGGATGCTGGGGAGAGTAACCCTAGCG
ACACGTTCGGTAGTCCTCGTCTGTCGTCGAATGAGTTTTTCAAGTGAGTA
TTTGTTCTTTTATCTATATTTGGTGCGTGTGTGTTGTGTTGTGTTGTGTT
GTTTTGTGTTGTGTTAATTTTCGGGGGGGTTTCAGAATTGTGCGTGTAGT
TATTCAGTATGCAGCATTCGGTAAATATGATGATGGTGATGGTGGTATTC
ATGTCCGAACAGCTTTTATTTTCTTATCTAAACTGTTTTTTGTTTTGTTT
TGTTTTGTTTTTTCGAAGTGTCATGCGCCACTGGTCGAACTGGGACTTAC
CCTACTATTGATGGTGTATAACTTGAACCAAGAATTTTCTCGTATTTTGA
TATATTTACACAAGATTCGTGTATAGAAGCTACTAATTAATGGCATGTGT
TAATATAATTTACTCTTTCAGTGTAAACAATCCATGTTTTTTACTGTGAG
GTTGTTGAATCTCACGTGCTTTGCTTTATTCGCGCCACGGAGTTTTAGTC
ACATTCTCTCTCTCGAAGCATAAACACGATATTAGCGTTCACCTGGTCGT
ACGCACTTCGTACCAGTTTTAGTACGAAGGACTGCGCGTGATGTAAGAAC
AATTTTTAGAAGGAAGCGTTTCCGTTATGACGATGGTTATCATTTTTCGG
CACACACACACACCTTTTTACAACTTGATTATTGTCATTATCCAAGTCTT
TTAAAGTGGCTACTGTTGTACCTATCGATTGTGATACTCCGGTATTGATT
GGCATGGCCTCTTCCCATACTACATTTGCGAAATTTTAGTCATAACCTAA
CTTACTAGAACACCACTTGCTCTTGCCTATGTGGTGAAAAACCTTTGTAG
GCCGTCGAGGGTTTTTTTTTTTTACTTTTATTTTTTGTCGGAGGTTGAGT
GGGGAACTACTCGTTGGATGTCGAACAATGGCTATTATCCAGAGTATCAC
ACGCGAAGCAGTAACTGCTTTAACGGAATAGGAGATACGGTTTTGTCTTT
GGTTGAGGTCTTGACAGTAACGGTATTCACGGGACATGCTGAGGGGATCT
TGTGTGCGTATGTGGATCGAACTAATTATGTCGTCTAGCTCATCTCGGCG
CTAGTGGTGGCAGACGATGCCTGATTGATGGTAGTTACTGATCATATCCT
TGCATAGCCAGGGTCTACCCTCGACGATCAAGTGGGCAACACGATGCTAA
CACAGTGCCGTTGTTTCCCGCTGTTCATAACGGACAAAGTGCCGTGTGCT
GTCATGGGTTCCAATTCTCTGTTGCTAGTGACTCTTGTCGCGAAAAGGTT
ATGAAAGAAATGGTGACTATTTGCGTTGTCAGGTTGACAAGTGGAAAAAA
TGATAATCGTGTCGCATGTCGCGTAACTTCATCGCCCATTCCCCGTCCTT
CCCCACGACGAACCGGGCGTGCCTTGCTTCGACTCTTTTTTGCAGATGTC
TAAACGTGGAAGTCTGGATGTTCGCGGACAGGACCGTGGACGTCTGAATA
CGCGCCCGCGTGAAACGTCCATGTAAATACTACACTCGCATGTGTGGGGG
GAGGGGGAATTTTTTTTTGTTTTGCCCCTAAAAAGCGGTGTCGAGCAGTC
CGTGATGACATCAGCAGCAACGGGCATGGACGTAAAAAACTTGAAAGCAA
AACTCGCTTTGACCCCTCGTTGGCGGTGTAATACATGTGAGGAGAATGTG
GAACAGATCGCTGTTGGCGTCGGGGGGTCTTCTCGCGTGCGGAGTGCGAG
ATTTAGATTGTCGACTGCTGTCAAGGGCTGCTGCCTACGGAAATTGACGT
ATTCCAGAATCCGTGTGCGCCGTGTGCGCGGTGTGCTGGAGTTATTTTTT
GCTATATGTATGTCTGCGTTGTTTCTCGTCCAGTATCGTGTCTGCTGCAT
GAGCTTCTACCTATGCGGTGCGGCGGACGCTAGTCAGGGTAATGTACCGT
AGGTAGGCTGCTATGTGCTATAGGCTGCAAGCGGCGTGGATCTATCCCGT
GACTGGCTGTTTGGCGAGACGAGGGGTTGGAGGGATGAAGCAATCTGCGG
CTCGTCAAGACGGATTTGACGGTGTTGGCAAAATAGAGCGAGACAAACTG
AAGCGTGCAGTAGGGGTCGCGGAACATGTGTTTTGCTTTACCTCGTGTTC
GGTTTGGCTTGCTTTTTTTGCTGTGGGTGGATGACTGCCAGGGAAGACCA
ACTGCTTTCGTGCTCCGCGATTTTCTTGCTCCTTCTGAGTAAGTATATCC
GATAAAGCCATGATTATGGCCTACATAGCATCGGTATCCTGAAATTTCTG
TGTACGAAATAGAAAATACAAGTGGCTGCAACTTTTTTCTTCGGACCTCG
GGATAATAATGAATAATGACAGATAAAGTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig22159:930..3511-

>mRNA_H-paniculata_contig22159.5872.1 ID=mRNA_H-paniculata_contig22159.5872.1|Name=mRNA_H-paniculata_contig22159.5872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig22159:930..3511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGTGGCGGCGGTGGATTCGCGTTCCAGATTGATGACGAGCTGGA
TGCTGGGGAGAGTAACCCTAGCGACACGTTCGGTAGTCCTCGTCTGTCGT
CGAATGAGTTTTTCAAATGGGAGGTGGCGGCGGTGGATTCGCGTTCCAGA
TTGATGACGAGCTGGATGCTGGGGAGAGTAACCCTAGCGACACGTTCGGT
AGTCCTCGTCTGTCGTCGAATGAGTTTTTCAAATGTCTAAACGTGGAAGT
CTGGATGTTCGCGGACAGGACCGTGGACGTCTGAATGTCTAAACGTGGAA
GTCTGGATGTTCGCGGACAGGACCGTGGACGTCTGA
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