mRNA_H-paniculata_contig22152.5871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22152.5871.1
Unique NamemRNA_H-paniculata_contig22152.5871.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Match: D7FZ58_ECTSI (Immunophilin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ58_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.350e-18
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAAKV 150
            Q YYLKR+SKGY+FR  PKPWEA LEKPGGGLEI+ K+ +KPLLR+ AKV
Sbjct:  240 QGYYLKRVSKGYVFRVSPKPWEALLEKPGGGLEILGKYNEKPLLRNVAKV 289
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BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Match: K0RRV6_THAOC (DUF1995 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RRV6_THAOC)

HSP 1 Score: 73.2 bits (178), Expect = 1.010e-15
Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAAKV 150
            +AYYLKRIS+G++FRA P PW+A LEKP G +E+++++KDKP LR+ A++
Sbjct:   19 EAYYLKRISRGFVFRAFPGPWQAVLEKPDGSVEVLKEYKDKPRLREVAEL 68
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BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Match: A0A7S3Q0R4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0R4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.780e-14
Identity = 30/48 (62.50%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAA 144
            +AYYLKR+SKG+I+RA+P PWEA LEKP G +E++Q +K KPLLR+ +
Sbjct:  217 EAYYLKRVSKGWIYRAYPGPWEAYLEKPDGNVELLQSFKTKPLLREVS 264
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BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Match: A0A6U6DJL4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DJL4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.630e-13
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAA 144
            +AYYLKRISKG++FR+ P PWEA LEKP G  E+++ +K KPLLRD A
Sbjct:  223 EAYYLKRISKGWVFRSFPGPWEAYLEKPDGTCELLKSYKTKPLLRDVA 270
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BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Match: A0A7S2PN09_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PN09_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.710e-13
Identity = 30/50 (60.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAAKV 150
            +AYYLKRISKG++FR+ P PWEA LEKP G +E+++ +K KP LR+AA++
Sbjct:  232 EAYYLKRISKGFVFRSFPGPWEAYLEKPDGTVELLESYKTKPKLREAAEL 281
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BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Match: A0A7S1UZ45_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZ45_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.580e-13
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAA 144
            +AYYLKRISKG++FRA P PW+A LE+P G +E+M+ +K KP LRD A
Sbjct:  192 EAYYLKRISKGWVFRAFPGPWQAYLERPDGKVELMKSYKKKPQLRDVA 239
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BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Match: A0A7S1Y7W8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y7W8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.960e-13
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAA 144
            +AYYLKRISKG++FRA P PW+A LE+P G +E+M+ +K KP LRD A
Sbjct:  200 EAYYLKRISKGWVFRAFPGPWQAYLERPDGKVELMKSYKKKPQLRDVA 247
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BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Match: A0A7S2PA83_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PA83_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.010e-13
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAA 144
            + YYLKRISKG++FR++P PW+A LEKP GG+E+++ +  KP LRD A
Sbjct:  222 EVYYLKRISKGWVFRSYPGPWQAYLEKPDGGVELLKSYSSKPSLRDCA 269
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BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Match: A0A7S2MI61_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MI61_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.220e-12
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAAKV 150
            +AYYLKRISKG++FR+ P PW+A LE+P G +E+++ +K KP LRD A +
Sbjct:  230 EAYYLKRISKGWVFRSFPGPWQAYLERPDGTVELLKSYKSKPALRDVATI 279
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BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Match: A0A6S9J3V2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9J3V2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.570e-12
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAA 144
            +AYYLKR+SKG++FR++P PW+A LEKP G +E+++ +K+KP LR+ A
Sbjct:  155 EAYYLKRVSKGWVFRSYPGPWQAYLEKPDGTVELLKSYKNKPPLREIA 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22152.5871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ58_ECTSI1.350e-1874.00Immunophilin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
K0RRV6_THAOC1.010e-1558.00DUF1995 domain-containing protein n=1 Tax=Thalassi... [more]
A0A7S3Q0R4_9STRA5.780e-1462.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U6DJL4_9STRA1.630e-1364.58Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2PN09_9STRA1.710e-1360.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1UZ45_9STRA4.580e-1362.50Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1Y7W8_9STRA4.960e-1362.50Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2PA83_9STRA6.010e-1358.33Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2MI61_9STRA1.220e-1256.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6S9J3V2_9STRA1.570e-1256.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22152contigH-paniculata_contig22152:1848..2006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3.7e-15
Seed eggNOG ortholog2880.D7FZ58
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Domain of unknown function (DUF1995)
EggNOG OGs2BHAJ@1,2S1BD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929610.422771-CDS-H-paniculata_contig22152:1847..20061622929610.422771-CDS-H-paniculata_contig22152:1847..2006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22152 1848..2006 -
1691480934.9872167-CDS-H-paniculata_contig22152:1847..20061691480934.9872167-CDS-H-paniculata_contig22152:1847..2006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22152 1848..2006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22152.5871.1prot_H-paniculata_contig22152.5871.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22152 1848..2006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22152.5871.1

>prot_H-paniculata_contig22152.5871.1 ID=prot_H-paniculata_contig22152.5871.1|Name=mRNA_H-paniculata_contig22152.5871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
QAYYLKRISKGYIFRAHPKPWEACLEKPGGGLEIMQKWKDKPLLRDAAKV
RV*
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mRNA from alignment at H-paniculata_contig22152:1848..2006-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22152.5871.1 ID=mRNA_H-paniculata_contig22152.5871.1|Name=mRNA_H-paniculata_contig22152.5871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig22152:1848..2006- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCATACTACCTGAAGCGAATTAGTAAAGGATATATATTCCGCGCACA
TCCCAAACCGTGGGAGGCGTGTTTGGAGAAGCCGGGAGGCGGGCTGGAAA
TCATGCAAAAGTGGAAAGACAAGCCGCTGCTCAGAGACGCCGCAAAGGTT
CGTGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22152:1848..2006-

>mRNA_H-paniculata_contig22152.5871.1 ID=mRNA_H-paniculata_contig22152.5871.1|Name=mRNA_H-paniculata_contig22152.5871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig22152:1848..2006- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCATACTACCTGAAGCGAATTAGTAAAGGATATATATTCCGCGCACA
TCCCAAACCGTGGGAGGCGTGTTTGGAGAAGCCGGGAGGCGGGCTGGAAA
TCATGCAAAAGTGGAAAGACAAGCCGCTGCTCAGAGACGCCGCAAAGGTT
CGTGTGTGACAGGCATACTACCTGAAGCGAATTAGTAAAGGATATATATT
CCGCGCACATCCCAAACCGTGGGAGGCGTGTTTGGAGAAGCCGGGAGGCG
GGCTGGAAATCATGCAAAAGTGGAAAGACAAGCCGCTGCTCAGAGACGCC
GCAAAGGTTCGTGTGTGA
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