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Homology
BLAST of mRNA_H-paniculata_contig2215.5869.1 vs. uniprot
Match: D7G227_ECTSI (Ribonucloprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G227_ECTSI) HSP 1 Score: 222 bits (566), Expect = 2.540e-65 Identity = 124/173 (71.68%), Postives = 145/173 (83.82%), Query Frame = 1
Query: 130 MAKEEKAKS--KSKKSKEA-VKDGDKVAAAPVPYDVRMQAVTVISKPMANEKQTLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISHLAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTPPPEKKQAEWESL--ELFQKLTEVCTKEMSQVP 633
M KE+KAKS + K SK+ +K+G+ A VPY VRM+AVTVISKPMA+EK+T KFYKL+K AAK+KI RRGVKEVCKG+RQGRKGICVIAGDISPIDVISH+AY+CEE+GV+YIYVPSKVDLGAAAKTKRPTSCVL+TPP E K + W+ + ELF L EVC +EM QVP
Sbjct: 1 MTKEDKAKSPKRQKTSKDIKIKEGETDA---VPYAVRMKAVTVISKPMADEKKTKKFYKLIKKAAKEKICRRGVKEVCKGMRQGRKGICVIAGDISPIDVISHMAYYCEEQGVNYIYVPSKVDLGAAAKTKRPTSCVLITPPRETKDSVWDPVTKELFADLKEVCIQEMVQVP 170
BLAST of mRNA_H-paniculata_contig2215.5869.1 vs. uniprot
Match: A0A836CPU2_9STRA (Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPU2_9STRA) HSP 1 Score: 148 bits (374), Expect = 3.940e-38 Identity = 78/139 (56.12%), Postives = 100/139 (71.94%), Query Frame = 1
Query: 220 YDVRMQAVTVISKPMANEKQTLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISHLAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTPPPEKKQAEWESLELFQKLTEVCTKEMSQVPK 636
Y+ R++A TVI++PMA +KQ K YKL+K +A K RRGVKEV KG+CVIAGDISPIDVI+HL +CEE V Y+YVPSK DLGAAA TKRPTSCVL+TP P ++S +L+ ++ +C +E SQVP+
Sbjct: 19 YEERLKACTVIARPMATKKQAKKLYKLVKKSAGAKSVRRGVKEVXXXXXXXXKGVCVIAGDISPIDVITHLPVYCEENEVRYMYVPSKQDLGAAASTKRPTSCVLITPKPG-----FDSQDLYTEVEAMCAEEESQVPR 152
BLAST of mRNA_H-paniculata_contig2215.5869.1 vs. uniprot
Match: M4C1U3_HYAAE (Ribosomal_L7Ae domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1U3_HYAAE) HSP 1 Score: 139 bits (351), Expect = 5.200e-35 Identity = 73/128 (57.03%), Postives = 96/128 (75.00%), Query Frame = 1
Query: 220 YDVRMQAVTVISKPMANEKQTLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISHLAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTPPPEKKQAEWESLELFQKLTE 603
Y+ R++ V+VISKP+A++KQT + YK+LK A K K RRGVKEV K IR+G KG+CVIAGDISPIDVISH+ CEE + YI+ PS+VDLGA+ +KRPTSC+L+TP +A + LE + +L E
Sbjct: 16 YEERVKHVSVISKPLASKKQTKRTYKVLKKATKVKGIRRGVKEVVKSIRKGEKGVCVIAGDISPIDVISHIPTLCEENDIPYIFTPSRVDLGASVLSKRPTSCILITP----NKAGFNVLEAYNELLE 139
BLAST of mRNA_H-paniculata_contig2215.5869.1 vs. uniprot
Match: K3WNU8_GLOUD (Ribonucloprotein n=5 Tax=Oomycota TaxID=4762 RepID=K3WNU8_GLOUD) HSP 1 Score: 139 bits (349), Expect = 8.950e-35 Identity = 70/130 (53.85%), Postives = 100/130 (76.92%), Query Frame = 1
Query: 214 VPYDVRMQAVTVISKPMANEKQTLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISHLAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTPPPEKKQAEWESLELFQKLTE 603
V Y+ R++ V+VI+KP+A++KQT + YK++K A K K +RGVKEV K IR+G KG+C+IAGDISPIDVISH+ CEE + Y++ PSKVDLGA+A +KRPTSC+L+TP +A + +L+ +++L E
Sbjct: 11 VSYEERVKHVSVIAKPLASKKQTKRAYKVVKKATKVKGIKRGVKEVVKSIRKGEKGVCIIAGDISPIDVISHIPVLCEENDIPYLFTPSKVDLGASALSKRPTSCILITPG----KAGFNALDAYEELLE 136
BLAST of mRNA_H-paniculata_contig2215.5869.1 vs. uniprot
Match: A0A1V9ZK33_9STRA (Ribonucloprotein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZK33_9STRA) HSP 1 Score: 136 bits (343), Expect = 5.830e-34 Identity = 64/110 (58.18%), Postives = 86/110 (78.18%), Query Frame = 1
Query: 214 VPYDVRMQAVTVISKPMANEKQTLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISHLAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTP 543
V Y+ R++ V+VI+ P+AN+K T K YKL+K + K K +RGVKEV K IR+G KG+C+IAGDISP+DVISH+ CE + Y++ PSKVDLGA+A +KRPTSC++VTP
Sbjct: 10 VTYEERVKHVSVIANPLANKKLTKKVYKLIKKSTKVKCTKRGVKEVVKAIRKGEKGLCIIAGDISPVDVISHIPVLCENNDIAYVFTPSKVDLGASASSKRPTSCIMVTP 119
BLAST of mRNA_H-paniculata_contig2215.5869.1 vs. uniprot
Match: A0A7S2SAZ3_9STRA (Ribonucloprotein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SAZ3_9STRA) HSP 1 Score: 137 bits (345), Expect = 6.960e-34 Identity = 79/134 (58.96%), Postives = 94/134 (70.15%), Query Frame = 1
Query: 202 AAAPVPYDVRMQAVTVISKPMANEKQTLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISHLAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTPPPEKKQAEWESLELFQKLTE 603
AA + Y+ R++AV+ IS PMA +K T K + L+K A+ K RRGVKEV K +R+ KGICVIAGDISPIDVISH+ CEEK V YIYVPSK DLGAAA TKRPTS VLV P+ +E EL+ KL E
Sbjct: 33 AAEEITYEQRLKAVSPISNPMAPKKLTKKLHXLVKKASSAKGIRRGVKEVVKALRKNEKGICVIAGDISPIDVISHIPVFCEEKDVPYIYVPSKQDLGAAASTKRPTSVVLVQCKPQ-----FEEKELYDKLME 161
BLAST of mRNA_H-paniculata_contig2215.5869.1 vs. uniprot
Match: F0YBI4_AURAN (Ribonucloprotein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBI4_AURAN) HSP 1 Score: 135 bits (339), Expect = 7.570e-34 Identity = 69/108 (63.89%), Postives = 83/108 (76.85%), Query Frame = 1
Query: 220 YDVRMQAVTVISKPMANEKQTLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISHLAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTP 543
Y+ R+ A++ IS P+A+EK T K +KL+K A+ K RRGVKEV K IR+G G+C+IAGDISPIDVI HL CEEK V YIYVPSK DLG AA TKRPTSCV+V+P
Sbjct: 1 YEERLAALSPISTPLADEKLTKKLHKLVKKASSAKALRRGVKEVVKAIRKGATGLCIIAGDISPIDVICHLPIFCEEKSVPYIYVPSKQDLGFAALTKRPTSCVMVSP 108
BLAST of mRNA_H-paniculata_contig2215.5869.1 vs. uniprot
Match: A0A7S3PXD9_9STRA (Ribonucloprotein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXD9_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.920e-33 Identity = 73/129 (56.59%), Postives = 98/129 (75.97%), Query Frame = 1
Query: 214 VPYDVRMQAVTVISKPMANEKQTLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISHLAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTPPPEKKQAE-WESLELFQKL 597
V Y+ R+QAV IS+P+A++K T K +KL+K A+ KI RRGVKEV KGIR+ KGIC++AGDI PIDVISHL EE G+ YI+VPSK +LGAAA TKRPTS VL+ P + K ++ +E+++L++ L
Sbjct: 12 VSYEERVQAVNRISQPLASKKSTKKAHKLVKKASSAKIVRRGVKEVVKGIRKNEKGICILAGDIYPIDVISHLPVLLEENGIPYIFVPSKQELGAAACTKRPTSVVLIRDPEKTKSSKKFEAMDLYKTL 140
BLAST of mRNA_H-paniculata_contig2215.5869.1 vs. uniprot
Match: A0A7S3MHC4_9STRA (Ribonucloprotein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHC4_9STRA) HSP 1 Score: 135 bits (339), Expect = 2.130e-33 Identity = 64/108 (59.26%), Postives = 86/108 (79.63%), Query Frame = 1
Query: 220 YDVRMQAVTVISKPMANEKQTLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISHLAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTP 543
YD +++ V+ I++P+A++K T K +KL+K A++ K RRGVKEV K +R+G KG C+IAGDISPIDV+ HL CE++ + Y YVPSK+DLGAAA TKRPTSC+LVTP
Sbjct: 11 YDEKVKFVSKIAQPLASKKTTKKLHKLVKKASQAKFVRRGVKEVVKALRKGSKGFCIIAGDISPIDVVVHLPIMCEDRRIPYFYVPSKLDLGAAASTKRPTSCILVTP 118
BLAST of mRNA_H-paniculata_contig2215.5869.1 vs. uniprot
Match: A0A024TAU2_9STRA (Ribonucloprotein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TAU2_9STRA) HSP 1 Score: 134 bits (337), Expect = 4.010e-33 Identity = 64/110 (58.18%), Postives = 86/110 (78.18%), Query Frame = 1
Query: 214 VPYDVRMQAVTVISKPMANEKQTLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISHLAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTP 543
V Y+ R++ V+VI++P+A +K T K YKL+K + K K +RGVKEV K IR+G KG+CVIAGDISPIDVISH+ CE + Y++ PSKVDLGA+A +KRPTSC+++TP
Sbjct: 11 VTYEERVKHVSVIAQPLAVKKLTKKLYKLVKKSTKVKCTKRGVKEVVKAIRKGEKGLCVIAGDISPIDVISHIPVLCESNDISYVFTPSKVDLGASASSKRPTSCIMITP 120
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 227.6 |
| Seed ortholog evalue | 4.3e-57 |
| Seed eggNOG ortholog | 2880.D7G227 |
| Preferred name | NHP2 |
| KEGG ko | ko:K02449,ko:K11129,ko:K11321 |
| KEGG Pathway | ko03008,map03008 |
| KEGG Module | M00425 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000154,GO:0000469,GO:0000470,GO:0000491,GO:0000492,GO:0000723,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0010833,GO:0015030,GO:0015934,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016604,GO:0018130,GO:0019438,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0034470,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040031,GO:0042254,GO:0042273,GO:0042592,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0051276,GO:0060249,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071826,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0090304,GO:0090305,GO:0090501,GO:0090661,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990904 |
| EggNOG free text desc. | rRNA pseudouridine synthesis |
| EggNOG OGs | COG1358@1,KOG3167@2759 |
| Ec32 ortholog description | NHP2 subunit of the H/ACA ribonucleoprotein complex |
| Ec32 ortholog | Ec-11_003590.1 |
| EC | 2.7.11.22 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01001,ko03009,ko03032,ko03036 |
| Exons | 6 |
| Model size | 2056 |
| Cds size | 516 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2215.5869.1 >prot_H-paniculata_contig2215.5869.1 ID=prot_H-paniculata_contig2215.5869.1|Name=mRNA_H-paniculata_contig2215.5869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=172bp
MAKEEKAKSKSKKSKEAVKDGDKVAAAPVPYDVRMQAVTVISKPMANEKQ
TLKFYKLLKAAAKDKIARRGVKEVCKGIRQGRKGICVIAGDISPIDVISH
LAYHCEEKGVHYIYVPSKVDLGAAAKTKRPTSCVLVTPPPEKKQAEWESL
ELFQKLTEVCTKEMSQVPKPS* back to topmRNA from alignment at H-paniculata_contig2215:744..11826- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2215.5869.1 ID=mRNA_H-paniculata_contig2215.5869.1|Name=mRNA_H-paniculata_contig2215.5869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11083bp|location=Sequence derived from alignment at H-paniculata_contig2215:744..11826- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATCTCACACATGAATGGGCGTCCGCTCTGAGATCTTACTGCTCTCTGG
AGAGGAGATTGAAGTGCGAAGAGCCCTCCGTATAGCCTCGTTGGTGGTGG
TCTGAGGTAAGATATGATATAATGGTCTTATCTTTGGTATTTCCTGACAT
TTTTCAGCAAGGCACGTATCGCCCAAAATGAGATTCGTTGGCTGATAGCA
CGCGCATCTCACCTGACCTGGGGCATCTTATCAATTCGGAATGCACAGCC
CACAGAACGAATCGGAGGTTCGAGCGGCTGCGGGATGAGGTATGCCGTGG
ACAAGCGAATGATAATTCTTTGAGGGACCACTGCCTGGAATTATTGTGCT
GGAGAATAGGCGAGAGTTGCATCTGTGCGAAAATACGTAACTGCCCACTC
GAGAGCAACTCAAACACCATAATAGCCTATAGCCGGCGGTAATCAAGCTG
GGTTTCTCCTGTCCAACCGGACGACGACAGCACCACGATGCCATACTTTG
TCCGTGTGCAGCCGACATTATATATCTGGTGGTGTCGGCTCGATTGCCTC
AGGGAGCAGATCGTTTGAAAGCGCGATGGCGAAGGAGGAGAAAGCAAAGT
CTAAGAGCAAAAAGTCGAAAGAAGCGGTCAAGGACGGCGACAAGGTGGCT
GCGGCACCAGTGCCCTACGATGTTCGCATGCAAGCTGTAACCGTCATCTC
CAAGCCAATGGCCAACGAGAAACAGGTGAAATCGGCGGTTGGTTGAGGGT
AGGGAGTCTGGTAGTCGAGGTTGGAGCTTTCCCTGTAGGCCATCGTTGCT
GTCAAATGTCGCGGTCAGTAAATGCTGATGCCCAATGATGCACCCAGGCC
AGAGTGATGAATTTATTCTACGCCCAGTGCAGCCTAACTGTCTAACACAA
ATATACAAACCCCTAAGTCCCTGAAAGCTCCACACCTACGATTCCGCCGC
ACATCAAGTGAAAAAAACACATAATACCCTCCTATTGGGTACGGACTGGA
AGGTATTGTACTGAAAGACGTAGTCTTTGGTCCCTATTGTGTGCCTGGAA
TTGTTCCTCGAGCCTTTCCGTCTAATTCGTAAAATGGAAGCTAAGATTGT
TATCATTTGTATCGAGTCTCGAACCTTGTCCTCGAGGGGCGAAGTTTAGC
CGGCCGTCAGAGGCAGCCGGAAGTAGTTCAGTAACTTAGCATATCTAGTC
TGGACTACTTGTCCCTACATATGACCGCCGACGTTGTATCTCAACAATGG
GCCCGCCTTCCTCTCTCTTTGCCTCTGCGGTATTTTGTATCGCTGTGCGC
TTTGGGCCCAGACTCTGAAATTTTACAAACTCTTGAAGGCGGCAGCGAAG
GACAAGATTGCTCGACGTGGGGTCAAAGAGGTGAGCTGCATGTACAGGTA
TAGCAACTGTTACCTCCAGCAACTTACCTGTGGTGTGAAGAAACTCTAGT
CAAAATCGTGAATTTCCAATTTTTTACTAGACATTTTATTATCCATCATT
TTATGGCGTCAAAAACACAGTTTTTTGCACGGACTTCATGATCGAGGAGG
ATCGGCAGCTCCCCGAGTAATAAAATTCGCAATATATTGACTGGAGGTTG
AGACCCTCACACAATTTTTAAAATGGGACGTCAACGAGATAGACAGGCGT
GCTCTCCTGGATGATGTTTCATAGCCCACAGTCAAACGCGCTGGTCACAC
ATGCCAGCACGAAGCACGTCCACAATCCAAGGTGTGAGCCTAACCATCCT
ATGGAAGATCTGCAGGAATGGCAATCGTTCATATCGGCAACGCTCGCTGC
TGTAGTGGCGGCCGTCGATATTCTAGACGAAGACGACAGACGCAGTCGAC
GCATAGGTGCAGCGGCGCTTGCTAGTCGCATGGTTGATCTATTGTCTCTG
GCACACACCCGAATTTAATCCCTGAGCCTTCAGTTCCTTCCATACCCACA
TTCCACGCAAGGGTTTTTTATTGATAAACATTGGGGTAGATGGTGCATTC
ATGGTGGTCCGCCTTCATAGAATGAGGGTGTGCTGGACGAGAACTCGTTT
GTTCGAATTTCTCTCGACTTAATTTCGCCGCTAGCAAAACGCCATCAATC
ATTTAACTGGTGATATTTTATGTTTTTTTAATCAGGCTCGACCCCATAAA
ATGAGCTATCAATTTTTCCCAATCGTTTTATTTCATAGTAAAAAAAATGG
AATTTAATGATTTTGACTAAAAGTGTTTTCGACACAATAGGAGATGATGG
CCTTAGACTACTTCTTATCGTGATTTTCTGTTTCTTGACCATCGCTTTTG
TTCGAGAATAAAGAAGACGCGGAAAAATTCCATGTGCAGATCATAGTCAA
GCCTGGGAAAAAAAAAGAGTCAGATATAAATCAACGGTGAACCAAGGAGA
GATATACGTTCATCTGTCATCGTCCATCTTCCACCACAACGATGAAGTGC
CAAAATACGCGGACTGTTTTTTACTGGTTTTGCTGGTAGGCCTCGGCATA
GTCTCATCGTTTTTGATATCAAACACTACGTGTATGCGTGGTTGGATGTG
TAGGCGGTGGATTATCGTCGTTGTAGCCGTCGGCATCCATGACAACGGCG
GCAATATGTAAATGATTGTTCGCCTCAGTTTCGTAGTGAGCTCGCGTTTT
CTATGTGCACCGGATCATCCATGACTGCTCATAATACTCGTAAATCGAAT
GGACAGGGGTAGGTGCTTTATTTTATGTGTCGGCTCATTCTGAAACTCCG
GCGAATACTTCCAGTTTTTTGTGAAAATCATTTGCAAGTATTCGTATTTG
TCCGGGGGTGTGGAGATGTGAGGTGTGACAGGTATACGTGCTGCATGATG
TGTGGTGATTGGCTACCATCGTAATCGTGGGACCCTCCCCATGCGTGCAG
TAAATCTTGCACAAAGAATATACGGGATTGGGACTTTTGACTCTGTCTCA
TGAAAACATTAGATTAAAGTTGAGGAAACTTCCTCCAACCTTGGGCCGTT
TGAGCGGGTCCGGTGAAAATGGGGATCACGTTCTCTCGAAAAAACTAGGG
CCGTGTATCGGTCATTTGAAAGCATACAAATACATCGGCCAGTTAAAGCC
GATATGCTGATATGTTTTTAATACATGGTTGTATCGTCTGAAAGCAAAGT
GGACCCGCCTGGCGCTTCGCTAGGCTAGCGGCATGCCGCGAGTCCCAACG
CCCCCCCCCCTGTCAGTCGAGGGCGCCTCGCCGAACGCCAGAAAATTTCT
CGTTTTGGCTTCATTTCTCTTTAGGAACGATAATCTCGAGTACCTCTTGG
AGGCAACCTGAACTTAAACTGATGGACTCATTTTTGGAGAAAGAGAAGGG
CTTCCAAGAACGAAGATATTGACCTTTATGCCACTCGGCCGTGTACTATC
CCCACACAATCCCTGCAAGATAAACAGGCCAAAGCCCTTTGGAATTTATT
TGTGACAGATGCCCAGGACATGGTTACGGGGATAGTGACCGTAGTATTTA
TAAAATATACCGATATATCGGGAAGGCAATGGATTGATTTATGTTTATCG
GACCAATATGCCGTGCATTGTTTTTGTATCCGTACCTATGAAAAGCCCTG
GAAAACACACTTGGAGGCCAAACTCTCCGGGACAACGAAGTCCATCGCAA
AAAACTCCACGACGAGAAGTCGTCTTAATAACACCTTCAAGGCTTTGGTA
CCACCGCAAACCGCCCAAAAATAGTAAAAACCTTAACATGACCAACCGCA
TATCGGCCGGAAATAGTAAACCTCTAACATGATCGATCGCGAACCGGGAA
AATTCTCACATCGCCGACCGCAAAACCGGCCGGAAAGTGTACAATTCACG
CATGATGAAACCGCAAACCGAAACGCGGACTTGGTCGTGTCAAGAAACGT
GCGATACCGTTGACGTTAAGAGACTTGCTTCTTTTTTGTTCATCTCCAAC
TGACCCCTTAAGCTTGTGCCGTCTGCCTTATGAATATCGTGTGCTTAAGG
TCTGCAAAGGGATCCGTCAGGGCAGAAAGGGAATCTGCGTGATCGCGGGG
GATATTTCCCCAATCGATGTAATTTCACATCTAGCGTATCACTGTGAGGA
GAAAGGGGTGCACTACATGTGAGTCACTATCCGTCGGATTATTGAGCATA
TTTTGGTAACTTGCTTCGCCGTATCGGTAGTGGGGTTGGAGGTCGGCACC
TTGTCCGGTACAACCGGCAGCTGTAGCGTCGAAAGCGTTTTGCTGTGTGT
TTGGTACTAATGTGCTCTCTGCTCCGTGAGAAGGTTGCGGTAGTCTTTGC
ATAAGGTGTGCTCACATCACCGGTGGTTCTGGTTAAGCGGGAGCCCAGAC
TCTGAAGCACATCTTCACCATGTCCGCTTGTGGTGCAACACACGCCTCTT
TGGCCCACGTTAACACTACGGTCCTCCCTGCTGGGGCCGTGAGGTTGTCG
GTCTTGAGTCTGCCTCTGCAGAGGAAGCCCACGCTGTGTACTTCACGCGC
GATCGACGCTTCATCTCCTTGTTCAGCATGCTGCCGAGCGGCTTGGCAAG
CGGTGTTGGGCCGCCAGGAATGAGTACACTATCCGTGTTTGCGTCTATCG
CCAGAGTCGCCAAGAACTTGTAGTCGCGGTGGCACTTGAAACCGTCAAGC
ACCGATACGCTCCGCTGCTAAGCATTAGATTTGTCCCGGGGCGAATCTTC
CAGTTCTTGCGTATCCACAGGTTGCACTCTCAGACATTGCACCCTTTGTT
TTCCTGCAACCAGAACGTCATTACACTCACGAGGTAACCCTTCTTCTGCG
ATTGGCCGGAACTAATTGCAACTAAACGGAGCCCTCCCCCGGTGTCGATG
GCCTCCCGGTGCGAGCCTGCGTGGTGGCGATGTGCGGAGCGCCCTTGAAA
ATAATGCTCGGTTTTACTTTCTGTCCATCAGCCATCACAGCGAGCACGAG
CGTGAAGTGCTGCTTTTCCCTGCCAGTGACCGTCAAGAAAGCGGGAGGGA
CGAACGGTTGTCAGCTATCGTCTCTTGAGATTGAATACAGTCTCAACTTT
GAAAGAAAATATAACGATTGCCCAATTCTATTGATGCCCACGTGCACCAA
AAATCATACGGAATTACACAACTAGATCCTCTCTAAACTGTACCAGGAAA
AGTCATCGACCTCAATTGCCGTGAAGATCCGAGCGTCCTTCGCTCGAGTG
TTCTCAAGCGTCGTCTCCATTTGCATTTTGTGCTGGATTTGGGTCTGGTC
CATGTTCCCGAACTCGCTGAATACCTCGTCCTGCACAGAGAGCATTTGCC
TAGTAGATGGCCCCGTGACATCCACGTCATCAATCGCTCGCGCACTATGA
CCGAGCGCAGGCGCCGTGGCTGCCGAACGGCTGGTGTAGATCTGAGCCCG
TGTCTTGTTGCTGACGTGATCTTTTATCAGGGTGGCACATGCCAATCCCC
CATAGCCCACTGGGAACTTTGGCCACTTGTGCGGCGACGAAGGCAAAATT
GGTTGCACTTGCGAAACCGGGCGTACCATTTGTCGAAAGTATGGTTGAAT
CGTTCCATTTGCCCGTCCTTGTCACTGTTTGGGAGCCCGTCCGACATGTC
AGGCTTCAGCTGCAGTACCTTGCTGAGCACCTCCTGCTTCCCTACATCGC
GATGTACTCTGCGCATTTCGTGTATCCAGTCACACAGCTCAGGCCCCACC
TTCGTAGTCGAGCACGAAGGCCCTGCATCCACGCTACGGAAGTTGCCAGC
GCCTTTGATGACCCTCTTTTTATTCATTCTAGGAGTTTTTGCAGCCCCTG
TGTTGCCTACTGGTTTCCCGTCAGAGCAAAGTTTGCTAGCGTACTCAATT
GCCTTCAGCTTTGCAGCTCTGCTGGATAGCTTCCTCTCTTCTCGCCCTCA
TTGCTCCTGTCCATCGAAAAGCCAGGTACAGGGTACTCGCGCGCCTTTTT
CTTATGGTTGTCCTTCGGAGCCGCTTCGATGTCGTCAATTGCTTCCCCAG
CTGTTTTCAGGGTCAGCAACAGGCGAATGACCTGCATGTGACAGCCTCCT
GTGTAGTACAACCACTCCCGGCGTTGGACCCACGGGTAGAATCGGCCGAA
CCTGACACCCTGGTGGAATTTGCCGCGTCGGGTGGGCTGCCGTTCCTGCT
AGCGCCCCCTGCGCTGGTCTTACTCATGATCTTGAGGATGGTCGGCAGTT
TTGCTGTGAAGAGTGTTTGGTCTCTTTTATTTTATTTTTTCCAACATCGT
TATCTCAAACTTTCTCGGGCCCGCGGTCGCAGGGTGCGGCTGGTACATGT
TGGTGGTAGGTGCTTTAGCCCTATCAAAAGGTAATCTATCAACTTGTTTT
TTCCAGTTCGCACCGTGTGATCTGTCAGGGATGAGTTTATTTTGCTTCGC
ACCCGATGTGATACCGCGGTTATTACAGTGTTTGTTACTCTCGGATCCCC
AGTATCCAATGTTATGTACCAGGTAGAGTTCAGGTTGATGAGAAGTTGTC
ACACACCGTTTGGTGCGTAGCGTTTCATGTGGAAGAACTGTTGAACGCCA
CGTTGAAGGGAAGGGGTGTTCGCGTTTTTCCGCTGTCGATATTATGTCGG
GAGGGGCGGGGGGGGGGGGGGGGGGGCGTTTTCATGTTCTGCTCATGGTT
GTTTTTGGGGCATTTACCACGCGTCCTCAGGAGGGCAGAGGTTTGTTTCC
GTCAGGACGATCTCCGGTGATACCTAATCGCTCTTTCCTACTTTGTCGAA
TCTGGTTCAATCATATTTTCTTACTCCATGTGTTATTTATATCAACCCTT
GCCTGTTTAGGGCAATTTTTGTCTCCTATAGAGCCGCTAAAGCGTTTCTT
TTCGCAATTTGAGGATTCGAATGCCTTATTGCATCCATCGATTTTGTCCA
ATTTTATTGGTAATTTTTTTTTTTATTATTATTATTTTTTTTATATAGGG
GGCATGTACCGATGATACGGATTCGGTCCTTGCACGTATTACCGCAGTGA
CACTTGAACTTGATATCGTGGTGCTGGTCTACTTTCCTCGATTGTTTCTT
CTGTTTCTTTAGGTGAAGATCCCTGTACTAAAATTTGACTTTCAATTGGG
CCTGTGTCTAGGGGTTCATGTAGGTATCCCTTGAACCCTCACGGACTTAC
GCCCGAACGGGTAGGGTTGCTCGTGAACTGAGCATGACTGGGAGTCTAGT
CAGAGGTCTTTTAGTGGGTGCAACCCTCACACTGCACATTGCGTAATTGG
TTCAGCCGAACCGGGGTGGCGCCTACCCCGCAGAGGAACAAATGACTCTG
TTCTGTTAAAGGAAATGTAGAAATACTTGGGTATGAAAGCATCGGATAAC
GGTTTTTGCCTTAGCCTTCCGGGGGTTAAAAAAACAAATCCCTTGAACCC
TGTCCCTTCATCTAGCTTTTGTTCTACTTCCAGACCTTCCTTACTCGCAG
CTTCTCTTTTCAGTCCTTCTGCTTCTCTGACGGCAATTACCCCCACTAAT
ACCTCCTTAAAACTGCCCATATTCTTACTCTTAATCGTTTCCTCTTGAGA
AATTTCCAGTTCCTTGCACATATTCTGTACTACGGTGTCCCACTCTCTAG
GTCCTCTACCCTCTTCAATTGTTTTCCACATCGCCTTTCTTGCGATTCTT
GACAGCCTCTTTCCTCTCTTTCGATGTAGCCTGTCCTACCACTTCAGCTT
CATGTCCCTCGCTGGGTTCAGGGAGTACGTGTGACTCTGCCCTTGTTGTT
GCAATATTGCTGCGCTGGGAACATCCTCGTACCATCTTGGCTGCTTTTAT
CTGACGTACTTGTAAATTTTGGACTGCTTCCTCTGGCTCCCTGCCCACAC
GTCTCCTGCATGGTCTAGCGGCGGCATGATGGCGTTTTTGAATTGTTCTT
TTTTTGATACGTCCGTAAAGATGCTGCTCGGCTAGTGTCGGGTGCAATTT
TTCCTACCTGGGCTTTCGTTTTCCGGTTACTTTTTCTGTACGCCCCTCAT
ACAGTCCTTCGACAACTTAAACACCAAATTATGTAATGGGGGAGGAGAAG
GGGGAGGGGAGAGAAAACGAGGGAAAAAAACCAATTGGATTGAAAATCAG
AAATAAGTCGCTCTCGTTTTGCATGGCTACCAAGTATCTACCGCACAGAC
GAGACGAGCATTGTCGTTAATCCGAGTGGCGATGGTGTAAGGAGCGAAGC
GAGGTCTTTCAGGCAAAATTGTGTAAGTTTAGAGACCTTCTGTAGGACGA
TCGCGCGGGAATGTTGATTTTGTCTCCATGAGGCGAAGCTCAACAAATAG
TGTTGGAGTCCGCGATGCCATCGTGTATCACGTCCCTGCAGTCACTTCTA
TGCGGCCTGTACCAAGTATTTAAATATTCGACGATGGCGCAACTCCCCTC
CCCCCCCAAGGATACATGTGCACGTGGTGACGGTCGTCGTTTCAAATGAA
CAGGTTCATCGTGGTGCGGTCATGTATCAATCCGTGCAGTTGTGCGTGAT
GTGTTAGGCTTTTTGCTGAGCGTACAGCGCTTCGCGTTTCGTTGGTGTTT
TTTCGTGTCTATGTTTCCTGTTTTTGTTGTTGTGGCAGTTACGTGCCGTC
GAAGGTTGACCTGGGTGCCGCAGCCAAGACGAAGCGCCCGACTTCGTGCG
TCCTAGTGACGCCGCCGCCGGAAAAAAAGCAGGCGGAGTGGGAATCCCTC
GAGCTATTCCAAAAGCTCACGGAAGTTTGTACAAAGGAGATGTCACAGGT
CCCGAAGTGAGTTAGATAGCGACCTGATGTTTTTTTTTTTTTTGGGGGGG
GGGGGTCGGATGTTGAAGCGTCATATTGTAACCGTGTCATTGAGTTTTGT
TGTGTAAACGTTGCACTCCGTGCACGACTAGGACCATTTGTTCACTATTT
TTGACAGTAGTTGAGTGAGGTTTAAAATGTACGAAGACATGAAACAAAGT
GTTACTTCGGAAACCCAGGCGAATTTTTTTTCAAATAATCCCAATTGATT
GTAGTCGTCCGGGGGGTGAAACGTTGATATAGCCACGTGACCTGAGCTGA
CCTTGGTGCACGTTTCTGACGAGGAAAAGACATATGTGGTGTTAGTGTGG
GTGGCAAATCGTTGGTATAATATGTATACACCTCGTGTACGGACTCTGCA
TATCATAATCCCCGGAGGTATCGCACCGGGGTACAGGGGTGCGAACGTTA
TTCGAAGGCGACTATCTCGAGAACGGAGACATGACGCGTTCGAAAGAACC
TGTCAGTCGACGGATGAATCTTGGCAAAGAGTTTCTAACGGCATGCCATT
TGTTATCAGCGGCGCCGTAGTTCTCGAGATAATCGTGTTTAAATATATTC
TCACCTTCTGTGTAATACGTTCGGCTTTTACGGTATTCTTATTTGGGTTC
TATTCCCGGGGGCATGTTGAATTCGAATTTACTCACGTCACAATGCCTCC
AAACGCAAGTCACCAAGAGTGGTTCAAAATCAGATCAAAAAGAAGAACCC
CCTCCCCCCCAATAATAGAAAAAAAAATCTTGTAGTGAAGTTCTAAATTT
TTAACATGTTGGAAATTGCGAAAGCGAGAGGTTACCTTCCGATTTTTGAT
ATTTTGAAGCACCCTTTCCTAATGCGATGGGTTTTTCTTCGTATGCTGTT
ATTTGCTCTCAGGCCGTCATGATCTGCGGGCGAGATGCTGCAAGCGAAGC
GGTCACCGTGGTCACTTGTATCAGTACAGGCGAACGTGGGCAGTATGGAA
AAAAGGGTGTCAATTAGAGAGGATAGGGTGTAAAATGGGAAAGCGGCAAG
GAGATCGGGCATTGTGACCTCACTGCCGCAGCACAATGTGCAGTCGAGTA
TCGACACGGGATACTGTGGGGTTGCAGAACGAATCACTTCCCCCTCCCCC
CTGGACGAATTACGAGTTGTTCGAGCATTTACAGCGAAATTTATAATACT
ACTCGCGTGAAAGTTGATGATGAGAACGTTTATGTTATGTGCTCCGGACC
GTCTATGACTGTGCCGAGTAAAGACTGGCAAACGAATAAACGGGGGTTAA
TACCTTTTTATATGTGCTCGTACATTCTGAACCTTCAGGCAATTTTTGTT
TAAATCTCGTTGCGAATGCTCGAAGTATCTGTTTTCGTCCGAGAGGTGAA
CGCGTTATGAGGCCGGCAGGGCAGGAGAGGATGCGATATTAAGGTACTAG
GTATACCTGAAGTACTATTGATAACGATCTCTGGAGTTGCAGAGGTGGGC
AAACGTGCGACTAGTTCGAAAACACGTATTCACGTGAAGGAGTCTACCTG
GGGCTCGATCCGCCCTTGAGCTTGCGTTATGTGTATGCTGTACTTTGGCG
CCGATGAGGAGGGAGAACTATGTACAGTAGTACTTGAGAGTGTCCCGCTT
GCGATCTCACCAACATGAGGGGCTTACTTCGAGGAAACGTTTGATATGGT
TGGCAATGTGATGATGTGTTCAGGGAGATTTTGTGTCAAGATTGGGTGTG
ATTTCCGGTGGACACATCTTTCTGGGCGAGTGCACGTCTTTCTGAGGGTG
GAAAATCGATTTTGGGGTTAAAACGTCATCACAATTACCAAGTCACGAGT
CGACCGCTAGCCATTCGATACTTTAGACGACAGTAATTGTGGAGTTGTTT
GATGATGGAAGTTTTTGTGCGCATTATTCTTGGTCGTTAAATTGCTTGTG
CAATTTGCGTTCCTGCGTACACTAGGTGAAGGGCTGGATGACGCCTCACT
CCCGCTCGACAAATGCCTTGAACGTCACGTTTTGTAACTATAATAGGCGG
ATTTATCGTTAGTACGGGTGTCATCGTGAGAGAAGTTCTTATGCCAACGC
GAATCGCTGTTGAAAATTCTCGCTTACCGTGCGTTTGAAGAGGGGGGAGA
GGAGAAGTTACCATGTGGCCATCGAGAAACCACGTCGAGAGCGCGAGCAG
AAACATGATGTTCATGTCTCTTGTACACATGTCTTCCTCGTTGAAATGAG
GTCTTGAATTACAGATGCGACCTGCTTAGAAACGTTTTTGGGGCCGGGCC
TCGAAGTCTTAATTTTGGGCAATGTTGAACAAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig2215:744..11826- >mRNA_H-paniculata_contig2215.5869.1 ID=mRNA_H-paniculata_contig2215.5869.1|Name=mRNA_H-paniculata_contig2215.5869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig2215:744..11826- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAGGAGGAGAAAGCAAAGTCTAAGAGCAAAAAGTCGAAAGAAGC
GGTCAAGGACGGCGACAAGGTGGCTGCGGCACCAGTGCCCTACGATGTTC
GCATGCAAGCTGTAACCGTCATCTCCAAGCCAATGGCCAACGAGAAACAG
ATGGCGAAGGAGGAGAAAGCAAAGTCTAAGAGCAAAAAGTCGAAAGAAGC
GGTCAAGGACGGCGACAAGGTGGCTGCGGCACCAGTGCCCTACGATGTTC
GCATGCAAGCTGTAACCGTCATCTCCAAGCCAATGGCCAACGAGAAACAG
ACTCTGAAATTTTACAAACTCTTGAAGGCGGCAGCGAAGGACAAGATTGC
TCGACGTGGGGTCAAAGAGACTCTGAAATTTTACAAACTCTTGAAGGCGG
CAGCGAAGGACAAGATTGCTCGACGTGGGGTCAAAGAGGTCTGCAAAGGG
ATCCGTCAGGGCAGAAAGGGAATCTGCGTGATCGCGGGGGATATTTCCCC
AATCGATGTAATTTCACATCTAGCGTATCACTGTGAGGAGAAAGGGGTGC
ACTACATGTCTGCAAAGGGATCCGTCAGGGCAGAAAGGGAATCTGCGTGA
TCGCGGGGGATATTTCCCCAATCGATGTAATTTCACATCTAGCGTATCAC
TGTGAGGAGAAAGGGGTGCACTACATTTACGTGCCGTCGAAGGTTGACCT
GGGTGCCGCAGCCAAGACGAAGCGCCCGACTTCGTGCGTCCTAGTGACGC
CGCCGCCGGAAAAAAAGCAGGCGGAGTGGGAATCCCTCGAGCTATTCCAA
AAGCTCACGGAAGTTTGTACAAAGGAGATGTCACAGGTCCCGAATTACGT
GCCGTCGAAGGTTGACCTGGGTGCCGCAGCCAAGACGAAGCGCCCGACTT
CGTGCGTCCTAGTGACGCCGCCGCCGGAAAAAAAGCAGGCGGAGTGGGAA
TCCCTCGAGCTATTCCAAAAGCTCACGGAAGTTTGTACAAAGGAGATGTC
ACAGGTCCCGAAGCCGTCATGAGCCGTCATGA back to top
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