mRNA_H-paniculata_contig2214.5867.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2214.5867.1
Unique NamemRNA_H-paniculata_contig2214.5867.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Match: D7FQD7_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQD7_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 6.510e-126
Identity = 201/285 (70.53%), Postives = 234/285 (82.11%), Query Frame = 2 
Query:  140 MRLILGLILYQLWTTFSADGFVLRPSVIQGQHWVLGRPAGRASS-----RRQVQAMSFVSTDANVDEITMVKNSLLQVAAMTERGQLATTDQRNDVNLLVDRLEALKMEG--PEYKDDDMVGIWTLVYSSSQAFRSSPFFATFQALLGREKVAEKIFAFTDAFPNAKIGQARQIVNEDCTELVSRVEMSLWPHRWISGVVETRARIVNDDVGERLEVIVDDTSVRDSVLGKISPRLEGWRVPVDQLSERIFDRIPRITLETMFLDQDLRISRLPDRNFLVYVKDY 973
            MRL+L  +L +L +   A GF LRP +  G+    G    R  S           MS V T A+VDEIT++KNSLLQVAAMTERGQLAT  Q+ND++LL++RLE LK E     YKD++MVG WTLVYSSSQAFRSSPFFATFQAL+G++ VAE+IF+FTDAFPNAKIGQARQIVNEDCTEL+SRVEMS+WPHRWISGVVETR++IVNDD+G++LEVIVDDT V DS+LGKISPRLE  RVPVDQLSER+FDRIPRITL+T+FLDQDLR+SRLPDRNFLVYVKDY
Sbjct:    1 MRLLLCFLLARLVSL--AAGFGLRPGMGSGRSITAGNRHTRHFSCCDGKHVLTTRMSSVGTPADVDEITLIKNSLLQVAAMTERGQLATEAQQNDMDLLLERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKDGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDQLEVIVDDTRVSDSILGKISPRLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLVYVKDY 283
[Close]
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Match: A0A835ZIJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIJ0_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.230e-44
Identity = 90/198 (45.45%), Postives = 122/198 (61.62%), Query Frame = 2 
Query:  398 QRNDVNLLVDRLEALKMEGPEYKDDDMVGIWTLVYSSSQAFRSSPFFATFQALLGREKVAEKIFAFTDAFPNAKIGQARQIVNEDCTE------LVSRVEMSLWPHRWISGVVETRARIVNDDVGERLEVIVDDTSVRDSVLGKISPRLEGW-RVPVDQLSERIFDRIPRITLETMFLDQDLRISRLPDRNFLVYVKD 970
            QR+DV LLV RL+ L      +  DDM+G WTLVYSS + FR  P FA  QAL G      +++    A P A++G  +Q +     E      LV R+E+  W   ++ G +ET ARIVNDD+G+ LEVIV+ ++V +S L +  P   G   VPV +LSER FDR+PR+ LET++LD D R++RLPD   L+YVKD
Sbjct:    2 QRDDVELLVTRLQELVPAEEPFNGDDMLGSWTLVYSSGEVFRGDPVFAHIQALAGNPLWPNRVYRMAGAMPTARVGTVQQTIAAGGEEGRCKRCLVIRLEVFPW--NYLQGTIETEARIVNDDIGDGLEVIVERSAVTESPLTRFWPGKNGPPAVPVARLSERFFDRLPRLALETLYLDSDFRVTRLPDDTLLIYVKD 197
[Close]
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Match: A0A7S0WSZ6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WSZ6_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 1.960e-22
Identity = 83/238 (34.87%), Postives = 132/238 (55.46%), Query Frame = 2 
Query:  272 RRQVQA-MSFVSTDANVDEITMVKNSLLQVAAMTERGQLATTDQRNDVNLLVDRLEALKMEGPEYKD--DDMVGIWTLVYSSSQAFRSSPFFATFQ-ALLGREKVAEKIFAFTDAFPNAKIGQARQIVNEDCTELVSRVEMSLWPHRWISGVVETRARIVNDDVGERLEVIVDDTSVRDSVLGKISPRLEGWRVPVDQLSERIFDR-IPRITLETMFLDQDLRISRL-PDRNFLVYVK 967
            RR V+A +S V+ D+++ ++      LL+  A  +RGQ+AT  Q+ ++ +++ +LEA +    E  +  + + G W LVY+S +AFRSSPFF  FQ  L+G E++A  IF FTDA P A +GQA Q  + +  E VS V++ ++P     G V T + +        L + V++T V  S L  +   L+   VPV  + E +  R    ++ +  FLD +LR++R  PD    VY K
Sbjct:   23 RRVVRANVSSVAVDSDLKKV------LLRHVAGIDRGQVATESQKQEIEMVISQLEASQAPMSEQLEVQEALQGKWQLVYTSVEAFRSSPFFWAFQEGLVGSEELASAIFKFTDAIPGATVGQAFQTFDFNTGECVSEVDLEVFPGA--KGCVVTTSTVRCSTPPTCLVLTVENTRVARSNL--LPFLLDSVVVPVKDVVEAVRGRGKTAVSADMTFLDGELRVARTRPDGAIFVYRK 250
[Close]
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Match: A0A1X6P059_PORUM (PAP_fibrillin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P059_PORUM)

HSP 1 Score: 103 bits (257), Expect = 7.410e-21
Identity = 78/224 (34.82%), Postives = 116/224 (51.79%), Query Frame = 2 
Query:  302 STDANVDEITMVKNSLLQVAAMTERGQLATTDQRNDVNLLVDRLEALKMEGPEYKDDDMVGIWTLVYSSSQAFRSSPFFATFQALLGREKVAEKIFAFTDAFPNAKIGQARQIVNEDCTELVSRVEMSLWPHRWISGVVETRARIVNDDVGERLEVIVDDTSVRD-SVLGKISPRLEGWRVPVDQLSERIFD-RIPRITLETMFLDQDLRISRLPDRNFLVYVK 967
            S DA+    T +K  LL++AA T+RGQLAT+ Q+  V  LV  LEA            + G W LVY+S   F+++P                       A P   +GQ +Q++  D  ELV+ VE++ +P   I+G V T AR V    GERLE++V+ T V+  S+ GK+     G  +PV+QL  ++ +  +P   L+T +LD+ +RISR    +  VY K
Sbjct:  152 SFDADASR-TEMKGKLLEIAAATDRGQLATSAQKEAVEDLVSMLEAANPTDSPVDTALIDGTWLLVYASKPLFKTTP------------------LLLAAATPLLVVGQVKQMLRVDSGELVNDVEVTAFP--MITGTVSTTAR-VTPITGERLELVVEKTGVKGKSLAGKLDLGGLGGSLPVEQLYGKLKNGAVPETFLDTFYLDEKMRISRGKGGSIYVYTK 353
[Close]
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Match: A0A7S2Q3I4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3I4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.000e-19
Identity = 77/220 (35.00%), Postives = 121/220 (55.00%), Query Frame = 2 
Query:  335 VKNSLLQVAAMTERGQLATTDQRNDVNLLVDRLEALKMEGPEYKDDDMVGIWTLVYSSSQAFRSSPFFATFQALLG--REKVAEKIFAFTDAFPNA-KIGQARQIVNEDCTELVSRVEMS--LWPHR--WISGVVETRARIVNDDVGERLEVIVDDTSVRDSVLGKISPRLEG--WRVPVDQLSERIFDRIPRITLETMFLDQDLRISRLPDRNFLVYVK 967
            +K  L+ ++++T RG  ATT++ N V  LV +LEAL        +    G W L YSS+Q+FRSSPFF   ++ LG   +++AE  F   DA   A ++G+ RQI++++  ELVS  E+S  L P     + G V T A + +    E  E+ V  T V+ S +  +   L+     VPV +  + +   +P  TL+T ++D+ LRI+R  D NF V+ +
Sbjct:   66 LKRELILLSSVTNRGSCATTEESNLVVDLVTQLEALNPTADPAANCQ--GDWELCYSSTQSFRSSPFFLAIRSFLGDDNKQIAESAFDIHDAATTASRVGKVRQIIDKNNNELVSEYEVSVGLLPGLPVQVKGTVITSAEM-SVIRPESWELEVKGTKVKGSNVPFLDAFLDDSDLEVPVGEAYKAVSGAVPVSTLKTFYVDEGLRITRDVDENFYVFTR 282
[Close]
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Match: A0A7S2Y236_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y236_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.320e-19
Identity = 75/219 (34.25%), Postives = 119/219 (54.34%), Query Frame = 2 
Query:  335 VKNSLLQVAAMTERGQLATTDQRNDVNLLVDRLEALK-MEGPEYKDDDMVGIWTLVYSSSQAFRSSPFFATFQALLG--REKVAEKIFAFTDAFPNA-KIGQARQIVNEDCTELVSRVEMSLWPHR--WISGVVETRARIVNDDVGERLEVIVDDTSVRDSVLGKISPRLEGWRV--PVDQLSERIFDRIPRITLETMFLDQDLRISRLPDRNFLVYVK 967
            +K  LL +++++ RG+ A+ D +N +  LV +LEAL   E P  K +   G W L  SS+Q FRSSPFF T +A +G   + +AE  F   D    A +IG+ RQ +  D       +E+ ++P     + G V TRA        E  E+ V  T V+ S +  ++  L+  ++  PV+Q+ ERI   +P + L+T ++D+ +RI+R  D NF VY +
Sbjct:   84 LKRELLLLSSVSNRGEFASLDDQNVITDLVAQLEALNPTEDPAMKCE---GEWDLALSSTQFFRSSPFFLTIRAAMGASNKAMAENAFDIHDRATTAGRIGRVRQTIVGDTLTSEVDLEVGVFPGLPFRVKGSVITRASF-RPVSSETAELQVGATEVKGSNIPILNQYLDNLKLELPVNQIFERIQGSVPTVELKTYYIDEGMRITRDMDDNFFVYTR 298
[Close]
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Match: B8BQA8_THAPS (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQA8_THAPS)

HSP 1 Score: 97.1 bits (240), Expect = 6.720e-19
Identity = 79/236 (33.47%), Postives = 123/236 (52.12%), Query Frame = 2 
Query:  299 VSTDANVDEITM---VKNSLLQVAAMTERGQLATTDQRNDVNLLVDRLEALKMEGPEYKDDDMVGIWTLVYSSSQAFRSSPFFATFQALLGR--EKVAEKIFAFTDAFPNA-KIGQARQIVNEDCTELVSRVEMSLW-----PHRWISGVVETRARIVNDDVGERLEVIVDDTSVRDSVLGKISPRLE--GWRVPVDQLSERIFDRIPRITLETMFLDQDLRISRLPDRNFLVYVK 967
            VS D + D+  +   +K  LL ++++T RGQ A+ ++ N V  LV +LEAL        +    G W L YSS+Q+FRSSPFF   ++ +G   + +AE  F   D    A ++G+ RQIV+    EL+S  E+S+      P R + G V T A +      E  E+ V  T V+ S +      L+  G  +PV +  + I   +P   L+T ++D+ +RISR  D NF V+ +
Sbjct:   71 VSVDIDEDDAIIRDELKRELLLLSSVTNRGQCASQEEENLVVDLVTQLEALNPTADPALNSQ--GDWELCYSSTQSFRSSPFFLAIRSFMGESNKSMAENAFDIHDRATTASRVGKVRQIVDAGNMELISEYELSVGLLPGLPVR-VKGTVITSADM-RAIAPETWELTVKATKVKGSNVPFFDQYLDDSGLELPVGEAYKAISGSVPVSVLKTFYVDEGMRISRDVDDNFFVFTR 302
[Close]
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Match: A0A0D2KT63_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KT63_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 2.920e-18
Identity = 86/275 (31.27%), Postives = 128/275 (46.55%), Query Frame = 2 
Query:  254 AGRASSRRQVQAMSFVSTDANVDEITMVKNSLLQVAAMTERGQLATTDQRNDVNLLVDRLEALKMEGPEYKDDD-------------------------MVGIWTLVYSSSQAFRSSPFFATFQALLG---------------REKVAEKIFAFTDAFPNAKIGQARQIVNEDCTELVSRVEMSLWPHRWISGVVETRARIVNDDVG-------ERLEVIVDDTSVRDSVLGKISPRLEGWRVPVDQLSERIF-DRIPRITLETMFLDQDLRISR 934
            AG A++  +++  + V + A+V +    K +LL+  A   RG LAT   +  V  LV  LEA                                     + G W L+Y++++AFR+SPFFA+F  ++                   +A+ IFAFTDA P A IG A QI+      LVS V++S++P   + G V TR+R+             + LE+ V+ T V  S     SP L+   VPV+QL ER+      R+T E  FLDQ+LR++R
Sbjct:   65 AGAAAAVAELKRAAAVESAASVAD---AKAALLERIAGLNRGALATNADKEAVAALVSALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSGLLDGRWELLYANTEAFRNSPFFASFSNVVSGLADVAGLSGTIDVPNGALADAIFAFTDAIPGATIGAAYQIITPGA--LVSEVDLSVFPG--LRGTVVTRSRLERPATAGGAGGAPQVLELFVESTRVERS---NFSPLLDQVSVPVEQLIERLRGSEAARVTYEVTFLDQNLRVTR 329
[Close]
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Match: K0SUV6_THAOC (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUV6_THAOC)

HSP 1 Score: 95.9 bits (237), Expect = 3.280e-18
Identity = 79/217 (36.41%), Postives = 119/217 (54.84%), Query Frame = 2 
Query:  335 VKNSLLQVAAMTERGQLATTDQRNDVNLLVDRLEALKMEGPEYKDDDMVGIWTLVYSSSQAFRSSPFFATFQALLG--REKVAEKIFAFTDAFPNA-KIGQARQIVNEDCTELVSRVEMSLW-----PHRWISGVVETRARIVNDDVGERLEVIVDDTSVRDSVLGKISPRLEGWRV--PVDQLSERIFDR-IPRITLETMFLDQDLRISRLPDRNF 952
            +K  L+ +A+ T RGQ AT +++N V  LV +LEAL        +    G W L YSS+Q+FRSSPFF   +A LG   ++VAE  F+  D    A ++G+ RQI++   TEL+S  ++S+      P R + G V T A + +    E  E+ V  T V+ S +  I   L+  +V  PV ++ E I    +P   L+T ++D+ +RISR  D NF
Sbjct:   76 LKRELILLASTTNRGQCATLEEQNLVIDLVTQLEALNPTADPALNSQ--GDWELCYSSTQSFRSSPFFLAIRAFLGDDNKEVAENAFSIHDMATTASRVGKVRQIIDSYNTELISEYDLSVGVAPGLPVR-VKGCVVTSADL-SVSAPETWEMKVRGTRVKSSNVPFIDEWLDDSQVEVPVGRVYEAINGGDVPAAILKTYYVDEGMRISRDADENF 288
[Close]
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Match: A0A6V1MSR7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MSR7_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 3.750e-18
Identity = 77/243 (31.69%), Postives = 127/243 (52.26%), Query Frame = 2 
Query:  266 SSRRQVQAMSFVSTDANVDEITMVKNSLLQVAAMTERGQLATTDQRNDVNLLVDRLEALKMEGPEYKDDDMVGIWTLVYSSSQAFRSSPFFATFQALLGR--EKVAEKIFAFTDAFPNAKIGQARQIVNEDCTELVSRVEMSLW-----PHRWISGVVETRARIV-NDDVGERLEVIVDDTSVRDS-VLGKISPRLEGWRVPVDQLSERIFDRIPRITLETMFLDQDLRISRLPDRNFLVYVK 967
            SS  + +  S   ++ +V     +K+ ++ + A T RGQ+A+ D+++ V  LV +LE++    P+       G W LVYS  + FRSSPFF   + L G   EK ++       A   ++IG+ +QI+    + LVS V++ +      P   I+G V + A +  N D  + L+V V  T V +S +L  ++    G  VPV  + ER+   +P + L T +LD  +RISR  D +F VY++
Sbjct:   57 SSMVEEEPESPPESEEDVTYREKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMN-PSPKTNIAASYGTWELVYSDVELFRSSPFFMAVRDLFGDDDEKASQAFSLHRLATSTSEIGKVKQILGP--STLVSEVDLKVGTIPSLPFA-ITGTVVSDAEVTANGD--QSLQVTVGKTKVSNSNILKFLNLEDMGAAVPVKDVFERLRGSVPTVPLNTYYLDDTMRISRTQDEHFFVYIR 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2214.5867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQD7_ECTSI6.510e-12670.53PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A835ZIJ0_9STRA1.230e-4445.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0WSZ6_9CHLO1.960e-2234.87Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A1X6P059_PORUM7.410e-2134.82PAP_fibrillin domain-containing protein n=1 Tax=Po... [more]
A0A7S2Q3I4_9STRA1.000e-1935.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2Y236_9STRA1.320e-1934.25Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
B8BQA8_THAPS6.720e-1933.47PAP_fibrillin domain-containing protein n=1 Tax=Th... [more]
A0A0D2KT63_9CHLO2.920e-1831.27Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
K0SUV6_THAOC3.280e-1836.41PAP_fibrillin domain-containing protein n=1 Tax=Th... [more]
A0A6V1MSR7_HETAK3.750e-1831.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2214contigH-paniculata_contig2214:14839..20536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.7
Seed ortholog evalue1e-101
Seed eggNOG ortholog2880.D7FQD7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PAP_fibrillin
EggNOG OGs2CY64@1,2S2BE@2759
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-01_006500.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1307
Cds size930
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.991923-UTR-H-paniculata_contig2214:14838..151631622929609.991923-UTR-H-paniculata_contig2214:14838..15163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2214 14839..15163 -
1691480934.7572808-UTR-H-paniculata_contig2214:14838..151631691480934.7572808-UTR-H-paniculata_contig2214:14838..15163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2214 14839..15163 -
1622929610.1462216-UTR-H-paniculata_contig2214:20484..205361622929610.1462216-UTR-H-paniculata_contig2214:20484..20536Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2214 20485..20536 -
1691480934.8296869-UTR-H-paniculata_contig2214:20484..205361691480934.8296869-UTR-H-paniculata_contig2214:20484..20536Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2214 20485..20536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929610.010778-CDS-H-paniculata_contig2214:15163..152811622929610.010778-CDS-H-paniculata_contig2214:15163..15281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 15164..15281 -
1691480934.7691932-CDS-H-paniculata_contig2214:15163..152811691480934.7691932-CDS-H-paniculata_contig2214:15163..15281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 15164..15281 -
1622929610.0298903-CDS-H-paniculata_contig2214:15692..158571622929610.0298903-CDS-H-paniculata_contig2214:15692..15857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 15693..15857 -
1691480934.7784047-CDS-H-paniculata_contig2214:15692..158571691480934.7784047-CDS-H-paniculata_contig2214:15692..15857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 15693..15857 -
1622929610.051163-CDS-H-paniculata_contig2214:16128..163491622929610.051163-CDS-H-paniculata_contig2214:16128..16349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 16129..16349 -
1691480934.787886-CDS-H-paniculata_contig2214:16128..163491691480934.787886-CDS-H-paniculata_contig2214:16128..16349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 16129..16349 -
1622929610.0709949-CDS-H-paniculata_contig2214:16669..167921622929610.0709949-CDS-H-paniculata_contig2214:16669..16792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 16670..16792 -
1691480934.7986047-CDS-H-paniculata_contig2214:16669..167921691480934.7986047-CDS-H-paniculata_contig2214:16669..16792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 16670..16792 -
1622929610.090079-CDS-H-paniculata_contig2214:17559..176341622929610.090079-CDS-H-paniculata_contig2214:17559..17634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 17560..17634 -
1691480934.8062732-CDS-H-paniculata_contig2214:17559..176341691480934.8062732-CDS-H-paniculata_contig2214:17559..17634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 17560..17634 -
1622929610.1123984-CDS-H-paniculata_contig2214:19924..200211622929610.1123984-CDS-H-paniculata_contig2214:19924..20021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 19925..20021 -
1691480934.8138936-CDS-H-paniculata_contig2214:19924..200211691480934.8138936-CDS-H-paniculata_contig2214:19924..20021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 19925..20021 -
1622929610.1289291-CDS-H-paniculata_contig2214:20353..204841622929610.1289291-CDS-H-paniculata_contig2214:20353..20484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 20354..20484 -
1691480934.8218594-CDS-H-paniculata_contig2214:20353..204841691480934.8218594-CDS-H-paniculata_contig2214:20353..20484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 20354..20484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2214.5867.1prot_H-paniculata_contig2214.5867.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2214 15164..20484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2214.5867.1

>prot_H-paniculata_contig2214.5867.1 ID=prot_H-paniculata_contig2214.5867.1|Name=mRNA_H-paniculata_contig2214.5867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=310bp
MTARYKTLSATRLAIWQLLDENFHGVVLKMRLILGLILYQLWTTFSADGF
VLRPSVIQGQHWVLGRPAGRASSRRQVQAMSFVSTDANVDEITMVKNSLL
QVAAMTERGQLATTDQRNDVNLLVDRLEALKMEGPEYKDDDMVGIWTLVY
SSSQAFRSSPFFATFQALLGREKVAEKIFAFTDAFPNAKIGQARQIVNED
CTELVSRVEMSLWPHRWISGVVETRARIVNDDVGERLEVIVDDTSVRDSV
LGKISPRLEGWRVPVDQLSERIFDRIPRITLETMFLDQDLRISRLPDRNF
LVYVKDYRN*
back to top

mRNA from alignment at H-paniculata_contig2214:14839..20536-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2214.5867.1 ID=mRNA_H-paniculata_contig2214.5867.1|Name=mRNA_H-paniculata_contig2214.5867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5698bp|location=Sequence derived from alignment at H-paniculata_contig2214:14839..20536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAATGTGGTAACGAAAAACTAAAAAGCAAAAGTGAATCTCGAGCAGAGC
AGATGACTGCAAGGTACAAGACCCTCTCAGCAACACGACTCGCGATTTGG
CAGCTATTGGACGAAAATTTTCACGGTGTTGTATTGAAAATGAGGTTAAT
CTTAGGATTGATCCTGTACCAGCTTTGGACAACGTGAGTTTCACGGATTG
AGCTGTGTCAGAAGCATGTTCAAACGGTTGTAAACCCGGAGTAGTATCTG
TTGTTGTATGGAAATGCACTGCCAAGCCAGACGGGATGGTTGCCGATAGC
TATTGCGTGTTTTGGGTTTGGTACACAGGGATAGAGAAGACAGACAAACG
CCACACGTGATACGACGGTCGTAGTTATTCGCCTTTATTAGATGCCTATA
TGTGGGCCCATGAAGCTACTGCGGATATAGATGAACTGTAGTTGGACGCC
TTGACACATAAATCTGCAATCCTGAAATCCTGTATTTTTACCCGTCGGAC
CTCCCTGTACCTCAGGTTCTCAGCCGATGGCTTCGTCCTCAGACCCAGTG
TGATTCAAGGCCAGCATTGGGTATTAGGCAGGCCCGCGGGGAGAGCTTCC
AGTAGGAGACAGGTGTGTACTAGGTTGACATATCTATTTTTTCGACATAT
TTGTCTTGCGCTCATGTAGAAAATACCAGTATTAACATGCCAGTCCGTCT
GTCGAATAACTCGATGGTTTTTACTGCAAGTACTCTATTGTCTGTATTGT
ACTGATTCCAAGCTCGTTGCCACGCCGCGAAGCGGCACAGCATTTGGGCG
ATTTTATTTTAGGCGCTACCGTGACCCGATTCGATACTGCAAGGGCGAAG
TAAAAGGGTAGGGGTAGGGATAAGGTTGCTGGGGTTGGAAGAGTGCTCGC
AGCTTTTTCCCGGACGCAATTTCGACAACCACAAATTCCAATCAACCGTG
GATTTTTTCATAGAGGATCGTAAACAACTCTCAATGATGCTGAGCTTTTC
AGGTGAACGGCAAAACCTGAAAGAACTGACCGCCGACCGTCTTTAATCTG
ATAGAACCAACGCCGAACGGTTATGCAGGTGAAAAATCTAACGAAACCGA
CTGCCGCTGACCATGTTAAACCGACGAGAATCGACCGTGAATCGGTTTTC
CGTATGTAGAATCTGACAGAACTCTACCGCGAACTATATAGTTTCGGTTC
TTGTCACAGGTAAAGTCATATGTGATGTCAGTCATGGGAAGCGTCCTGGA
AAAATGATGTTCTCTGTGCAAGGAGAGTACTCGGGCAGGCCAACAGCCGA
TATCAAATGCTCAAGTTCAATGTTTGGCTAAACAGGAAACTGGCGAGCGG
TGATGAATAATGCAGAAGTATTTTGGTACTCACTACCGCTTCAGTACCGT
CAATATCGTCAGCCCCAAATGCTCGGTATTGTTCAGTACCACCAGTATCA
CCAGCCCCAAATACTTGGTATGGCTCAGTATCCCTGATATTTTCACCTCA
AGATACTGAGTAGAGTACTGAGTAGGTCACTAGTAGGTACTAGTGACACT
GGGTACCACCAGTACCGTCAGCCCCAAGTACTCAGTATATCCTGAGTATC
TCCAGTAGTTAACTACTGAAAATGCTCGGTATTCTTCAGTACCACCAGTA
TGTCAGCGGATAATATTATTACTTCAATACCCCCAGTATTGACTACCAAA
CGCACTCAGTATTTTTCAGTGCCACTAGTACTAACACCTCATAGTACTTG
GTATTCTACAGTACAGTACTGGACTGTACACTGGTGATGTGAGATATTGG
ATAATAGGTTCAAATTAAGGTAGCTATCGTCAGATGCGCTGGCTAATACC
ATGTCTAGGTATAATAATACATACCGCGAGATATTTCAGGATGTCCACCG
CAAGTGCAGGAAGGATGTGGGGCTCACGTGAGTCAACCGCCCACTCAATG
AATACGGGCTACTGCGTACCGTAGCGAGTACTTAGTGCTGTACTACCAAG
GGCATGAGTGACACCACAGAATCTGCGGCAGGCTCCACCTCGGTGGGAGA
GAGAGCCGTAGCCGCCGCAGAAACGCCGAGTGTTCATCCAGCGGGGGCAA
GGCTGAAGGCTATTGGAGCTGAAAACCACCGCATATGCATTCACCTATGG
TGCGTGAAAACAATCGATGTGCGCCCAGGTGTCCTCATACTGTGCAAACA
GCAAATACCCGGCATTCTGCACAGTATGTTCAGTATACCGGTATTAAGTA
TCACTCCAGCACCGCAGTATCACGACCCCAAAATATTGGATATTGTTCAG
TACTGCCAGTATCGCGACCCTAAAATACCGAGGATGTACTGAGTTCCGTA
TCACTAAGTACTGGTGATATTGAGTACAATAAGTATCGTCAGCCCCAAAT
ATTATATATTTCTTCAGTATCACCAGTACCGTTAGCCCCAAATACTTAGT
ATTGTTCAGTACCACCAGTAAAGCGACCCTGAAATACTTACTATTCTCTT
TAGCACTAGTATTGTCAGCCCAAAATACAGAGAAGGGTACTAAATACCTC
AACAGTAAATGCTGGTGATACTGGATACCATCTGTATCCTCAGATCAAAT
TACTTAGTATTCCAATATACTGTACTGGAAATATCTTTGGAATATTGTGT
CTCTCAATCAATCGTTGCCACGATACTGTTGTACCCACCTACGACGCTGA
CGGTGATCACACACAATTGGGTGCCACAATGAACCCTCAGCACCAACCTG
TGCAATGAACTATTTCTTGTTCTGAACCGCATGGCTATAACGCACTGCCA
TTGCATGTCCTCGTATACCGGTATGCTGCACCGACGGCTGAGAATCGAGT
TTTGCCCCAATGCCTTTGGCCTACTGCGTTGCTCCTCACGCCGTGTTTTC
AGGTCCAAGCGATGAGTTTTGTGAGCACAGACGCGAACGTTGATGAGATC
ACCATGGTCAAGAACTCGCTGCTACAGGTAACATCACAACATACCTGTAG
TTCCTAAATTAGTTCGTATAGTAGTACATGAATATGCCACCCTATCTCGC
CTGTGGAGATTCGATCAACTGTAACTCGAGTTGGGTCGTATTCGACAGGG
AAATTCAGAAGGAACACACTCCATTGGCCCGATCAAAGAACGGGTGAGAT
ATTAAAGCGACCCATTACCAAGAACGAAAAGAAAAATGATCCGTGCAAGC
TTTTGACATTCCGCGAAGTATTGTCGACTACTCCAAACGTTCTTCTGGTC
TGCTCTGCCCGCAATCTATCAAAGAGTATTATGTAATGAAAGCACCGCTC
AAACACGATTTTACTACTCTCGAGTAGGTTGCGAAGTGTTTCCCACTTTC
CCTTTCTACTTCGTTCATTATTTGAGACACTCGCATCATGGCAAGCACTG
CTCACCACTAATTTGAGAAGACGACACAAATCTATCATCCAGATCGCGTT
GGGTAGGTCTGCGTTATGGTGGCTGTTGTAATCCAATGCGCGAAGAGGTC
CGACTACAATAATCAACGACTTCATCATTTTTTTGTGGTTACTTGTCATC
GTCCAGCAGAGAGGGCTCATGCAGTATAGTGGGCAAGATATGTGAATGTA
TACGGAGAACCGCCCCCAGGACATGTGCAACACAATATCACGTCTGTGAC
ACAATGTCACGTCTGTGAAACACCACAAAACTGACTGACGGCAGCGGAAA
GGTTTAAAATATAGCTTAATCTGCCTAGACTGGCCAATCGCTAGGTAGCG
GCCATGACGGAACGGGGACAACTCGCGACAACGGACCAACGAAACGATGT
CAATCTACTGGTGGACCGTCTCGAGGCGCTCAAGATGGAAGGACCAGAAT
ACAAGGACGATGACATGGTAAGCTACGACACAGTGTCGACCCAAAATAAG
AAAAAATACCCCGCTTTTTTATAATTGAGGTGAAACGCTCCCGTTATGTG
GTCGCCAGTCAAGCGTATTATTTGTAGGGAAAAGCCTAACGGACTTATAA
TGTAGCCCTTGCTCAGCGTCATGCTTCCCGCTGTGGTTGTTGAAGTGCGA
TGCATTGCTGCACGGTAGTGTTGAAAATATCCGCATGGCAGGTCTGCCGA
AAAACTCTACTCTTTCTATACCTCTCATGTTACCACAAACTGAACTTTCC
TAGGTGACTACGAACAAACAAACCATGACTGCTACAGGTGGGAATTTGGA
CGCTGGTGTACTCGTCGTCTCAAGCGTTTCGCTCCAGTCCTTTTTTTGCG
ACGTTTCAAGCTCTACTCGGCCGAGAGAAAGTTGCGGAGAAGATTTTCGC
GTTCACGGACGCCTTCCCGAACGCCAAGATAGGTCAAGCGCGGCAAATCG
TCAATGAGGATTGCACGGAGTTGGTATCCCGCGTCGAAATGTCCCTCTGG
CCGCATAGGTTAGTGGCGACGAGCGCAAGCGTGGTAGGGTTGTCGCCCAT
ACTATGGTAGATTTTTCGAGGCATCAATCTTCCATGTAGGTGTCGTGGAA
GTTGGAATACAACCCAAACCCCCTAGCGGTGATAATGTGTGCAGCCCTGA
GGGTCTACATCCTGCTGCTGGATATATGGTTATGTGTTGATTAATTCTGT
AGTGATACAATAGTAGCGAACATAACCAAGTGTCCTCCAAATCGGACAGC
TGCTTTGTTCTACTATTTTTTTGCTACAGGTGGATATCAGGCGTAGTGGA
GACGCGGGCGAGGATCGTAAACGATGATGTTGGCGAGCGTTTGGAGGTTA
TCGTAGATGACACTAGTGTACGGGACTCTGTTCTAGGGAAAATCAGCCCC
CGGCTGGAGGGGTGGCGAGTGCCTGTTGACCAACTTTCAGAAAGGTGATG
TGTTGATGAGAGTATACGATGATGTTAGCCTCGCCATCGAGGTTGATTTG
GATTTGTCTGGCGTCGGATATTGTCCTCGGTGCGTGCTTACAGGCGCAAA
CAGTACCAAGTTACGAAGCCCTTCGCTTTACAATTGAAGCGAAACCATTA
TGCGTAGACAGCTTTGTAACCACGACCAAGGGGCTTTTGAGCCCGAACGG
GGATCGATATCACTGCAAGTTTCCAGTAGACATTGGTTACACCACAGCGT
ATATTGCACGGCTTGGTATTGCGGGGGCTGTTTTTTCGTGAGCATGAGCA
TACGCATACGCATTTTACGCAACTCAACCACGTGAACCCGGCCTCCCCTC
CTTGCCTGTCTGTCTGCCTGCCTGCCGGCGTGCTGCCTCATCTCAACCCC
AAAAGGATTTTCGACCGCATTCCGCGCATTACGCTGGAGACGATGTTCTT
AGACCAAGATCTACGCATATCGCGATTGCCGGACCGAAATTTCTTGGTGT
ACGTCAAGGATTACCGAAACTAGTCTAGGTGATGGCGCAGAGAACGAAAA
TCCGCACCTCTATTCGGTTTGCGCTATTGGGCTTCATCGACTTTGCAGAA
GGGGGTCGTTGGCGCAGCCCAAAGCGACCTTGTAGCAGCAAGGTCGGGCA
TGTCAAAAACGCAAACTTATGACGAAGAGAAGTGAAAATTGAACATGGAC
TGATGGTCAATGTGATCAGTTTCTGATATGAAACACAGACCTTGATTGCG
TGAGGCCGCAGGGAATATTTCCAATGTGCAGATTTGTACTTGTCTCCCTA
TACGCTTAAACATTGTCGTGTGACCATCACCCATTTCCAAGAAACCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2214:14839..20536-

>mRNA_H-paniculata_contig2214.5867.1 ID=mRNA_H-paniculata_contig2214.5867.1|Name=mRNA_H-paniculata_contig2214.5867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at H-paniculata_contig2214:14839..20536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGCAAGGTACAAGACCCTCTCAGCAACACGACTCGCGATTTGGCA
GCTATTGGACGAAAATTTTCACGGTGTTGTATTGAAAATGAGGTTAATCT
TAGGATTGATCCTGTACCAGCTTTGGACAACATGACTGCAAGGTACAAGA
CCCTCTCAGCAACACGACTCGCGATTTGGCAGCTATTGGACGAAAATTTT
CACGGTGTTGTATTGAAAATGAGGTTAATCTTAGGATTGATCCTGTACCA
GCTTTGGACAACGTTCTCAGCCGATGGCTTCGTCCTCAGACCCAGTGTGA
TTCAAGGCCAGCATTGGGTATTAGGCAGGCCCGCGGGGAGAGCTTCCAGT
AGGAGACAGGTTCTCAGCCGATGGCTTCGTCCTCAGACCCAGTGTGATTC
AAGGCCAGCATTGGGTATTAGGCAGGCCCGCGGGGAGAGCTTCCAGTAGG
AGACAGGTCCAAGCGATGAGTTTTGTGAGCACAGACGCGAACGTTGATGA
GATCACCATGGTCAAGAACTCGCTGCTACAGGTCCAAGCGATGAGTTTTG
TGAGCACAGACGCGAACGTTGATGAGATCACCATGGTCAAGAACTCGCTG
CTACAGGTAGCGGCCATGACGGAACGGGGACAACTCGCGACAACGGACCA
ACGAAACGATGTCAATCTACTGGTGGACCGTCTCGAGGCGCTCAAGATGG
AAGGACCAGAATACAAGGACGATGACATGGTAGCGGCCATGACGGAACGG
GGACAACTCGCGACAACGGACCAACGAAACGATGTCAATCTACTGGTGGA
CCGTCTCGAGGCGCTCAAGATGGAAGGACCAGAATACAAGGACGATGACA
TGGTGGGAATTTGGACGCTGGTGTACTCGTCGTCTCAAGCGTTTCGCTCC
AGTCCTTTTTTTGCGACGTTTCAAGCTCTACTCGGCCGAGAGAAAGTTGC
GGAGAAGATTTTCGCGTTCACGGACGCCTTCCCGAACGCCAAGATAGGTC
AAGCGCGGCAAATCGTCAATGAGGATTGCACGGAGTTGGTATCCCGCGTC
GAAATGTCCCTCTGGCCGCATAGGTGGGAATTTGGACGCTGGTGTACTCG
TCGTCTCAAGCGTTTCGCTCCAGTCCTTTTTTTGCGACGTTTCAAGCTCT
ACTCGGCCGAGAGAAAGTTGCGGAGAAGATTTTCGCGTTCACGGACGCCT
TCCCGAACGCCAAGATAGGTCAAGCGCGGCAAATCGTCAATGAGGATTGC
ACGGAGTTGGTATCCCGCGTCGAAATGTCCCTCTGGCCGCATAGGTGGAT
ATCAGGCGTAGTGGAGACGCGGGCGAGGATCGTAAACGATGATGTTGGCG
AGCGTTTGGAGGTTATCGTAGATGACACTAGTGTACGGGACTCTGTTCTA
GGGAAAATCAGCCCCCGGCTGGAGGGGTGGCGAGTGCCTGTTGACCAACT
TTCAGAAAGGTGGATATCAGGCGTAGTGGAGACGCGGGCGAGGATCGTAA
ACGATGATGTTGGCGAGCGTTTGGAGGTTATCGTAGATGACACTAGTGTA
CGGGACTCTGTTCTAGGGAAAATCAGCCCCCGGCTGGAGGGGTGGCGAGT
GCCTGTTGACCAACTTTCAGAAAGGATTTTCGACCGCATTCCGCGCATTA
CGCTGGAGACGATGTTCTTAGACCAAGATCTACGCATATCGCGATTGCCG
GACCGAAATTTCTTGGTGTACGTCAAGGATTACCGAAACTAGGATTTTCG
ACCGCATTCCGCGCATTACGCTGGAGACGATGTTCTTAGACCAAGATCTA
CGCATATCGCGATTGCCGGACCGAAATTTCTTGGTGTACGTCAAGGATTA
CCGAAACTAG
back to top