mRNA_H-paniculata_contig2214.5866.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2214.5866.1
Unique NamemRNA_H-paniculata_contig2214.5866.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Match: A0A8K1CE23_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE23_PYTOL)

HSP 1 Score: 57.8 bits (138), Expect = 3.210e-9
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 MDPNRIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFKAKID 159
            MD NRIF  EQI V  DLP ++KE+TK+VIRENP   E+++ FSL +F+ K +
Sbjct:    1 MDVNRIFSAEQIAVPPDLPHVIKEWTKSVIRENP---EDVLYFSLKWFQDKTN 50
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BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Match: A0A225VSG9_9STRA (Radial spoke protein 11 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VSG9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.990e-9
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 MDPNRIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFKAKI 156
            MD NRIF  EQI V  DLP +LK++TKAVIRENP    +++AFS  +F+ K+
Sbjct:    1 MDVNRIFSAEQIAVPPDLPQVLKDWTKAVIRENPG---DVVAFSQQWFQDKM 49
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BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Match: A0A2D4C1R7_PYTIN (Radial spoke protein 11 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1R7_PYTIN)

HSP 1 Score: 56.2 bits (134), Expect = 1.280e-8
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 MDPNRIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFKAK 153
            MD NRIF  EQI V  DLP +LK++TKAVIR NP   E+++ FSL +F+ K
Sbjct:    1 MDVNRIFSAEQIAVPPDLPHVLKDWTKAVIRGNP---EDVLQFSLQWFQEK 48
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BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Match: J9IR88_9SPIT (Protein kinase domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IR88_9SPIT)

HSP 1 Score: 56.6 bits (135), Expect = 6.180e-8
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   13 RIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFK 147
            RIF  EQI VH++LP ILK Y+K VIR+NP   E++IAFS NYF+
Sbjct:    8 RIFSAEQIVVHQELPAILKNYSKEVIRKNP---EDVIAFSRNYFE 49
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BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Match: K3WFP0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFP0_GLOUD)

HSP 1 Score: 56.2 bits (134), Expect = 8.530e-8
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 MDPNRIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFKAK 153
            MD NRIF  EQI V  DLP ++K++TKAVIR+NP   E+++ FSL +F+ K
Sbjct: 1302 MDVNRIFSAEQIAVPPDLPLVIKDWTKAVIRDNP---EDLLCFSLKWFQEK 1349
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BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Match: A0A3R7D617_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D617_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.300e-8
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 MDPNRIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFKAKID 159
            MD NRIF  EQIEV  DLP +LKE+TK VIR +P   +++  FSL +FK + +
Sbjct:    1 MDVNRIFSAEQIEVPPDLPLVLKEWTKDVIRTSP---DDLAVFSLQWFKDRAN 50
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BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Match: A0A3F2RFF9_9STRA (EF-hand domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RFF9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.260e-7
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MDPNRIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFKAK 153
            MD NRIF  EQI V  DLP +LK++TKAVIRENP    +++ FS  +F+ K
Sbjct:    1 MDVNRIFSAEQIAVPPDLPQVLKDWTKAVIRENPT---DLLTFSQQWFQDK 48
[Close]
BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Match: A2F1S8_TRIVA (RIIa domain-containing protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2F1S8_TRIVA)

HSP 1 Score: 54.7 bits (130), Expect = 1.520e-7
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   10 NRIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFKAKIDN 162
            N ++  EQI++  D+P ILK Y+K +IR+NP   E+IIAFS+ YFK ++D+
Sbjct:    4 NNMYCAEQIQIPPDMPPILKAYSKEIIRKNP---EDIIAFSVQYFKDRLDD 51
[Close]
BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Match: A0A0W8D4I7_PHYNI (Betaine aldehyde dehydrogenase 2 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D4I7_PHYNI)

HSP 1 Score: 55.5 bits (132), Expect = 1.570e-7
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 MDPNRIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFKAK 153
            MD NRIF  EQI V  DLP +LK++TKAVIRENP    +++AFS  +F+ K
Sbjct:  288 MDVNRIFSAEQIAVPPDLPHVLKDWTKAVIRENPT---DLLAFSQQWFQDK 335
[Close]
BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Match: A0A0W8DXL7_PHYNI (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DXL7_PHYNI)

HSP 1 Score: 55.5 bits (132), Expect = 1.600e-7
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 MDPNRIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFKAK 153
            MD NRIF  EQI V  DLP +LK++TKAVIRENP    +++AFS  +F+ K
Sbjct: 1613 MDVNRIFSAEQIAVPPDLPHVLKDWTKAVIRENPT---DLLAFSQQWFQDK 1660
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2214.5866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A8K1CE23_PYTOL3.210e-954.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225VSG9_9STRA9.990e-955.77Radial spoke protein 11 n=1 Tax=Phytophthora megak... [more]
A0A2D4C1R7_PYTIN1.280e-856.86Radial spoke protein 11 n=1 Tax=Pythium insidiosum... [more]
J9IR88_9SPIT6.180e-862.22Protein kinase domain containing protein n=1 Tax=O... [more]
K3WFP0_GLOUD8.530e-854.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3R7D617_9STRA9.300e-852.83EF-hand domain-containing protein n=1 Tax=Aphanomy... [more]
A0A3F2RFF9_9STRA1.260e-754.90EF-hand domain-containing protein n=9 Tax=Phytopht... [more]
A2F1S8_TRIVA1.520e-749.02RIIa domain-containing protein n=1 Tax=Trichomonas... [more]
A0A0W8D4I7_PHYNI1.570e-756.86Betaine aldehyde dehydrogenase 2 n=1 Tax=Phytophth... [more]
A0A0W8DXL7_PHYNI1.600e-756.86Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2214contigH-paniculata_contig2214:13066..14206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDimerization-anchoring domain of cAMP-dependent protein kinase, regulatory subunit
Ec32 orthologEc-01_006490.1
Exons2
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.8956065-CDS-H-paniculata_contig2214:13065..131041622929609.8956065-CDS-H-paniculata_contig2214:13065..13104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 13066..13104 +
1691480934.7360055-CDS-H-paniculata_contig2214:13065..131041691480934.7360055-CDS-H-paniculata_contig2214:13065..13104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 13066..13104 +
1622929609.9138675-CDS-H-paniculata_contig2214:14080..142061622929609.9138675-CDS-H-paniculata_contig2214:14080..14206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 14081..14206 +
1691480934.7474413-CDS-H-paniculata_contig2214:14080..142061691480934.7474413-CDS-H-paniculata_contig2214:14080..14206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2214 14081..14206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2214.5866.1prot_H-paniculata_contig2214.5866.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2214 13066..14206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2214.5866.1

>prot_H-paniculata_contig2214.5866.1 ID=prot_H-paniculata_contig2214.5866.1|Name=mRNA_H-paniculata_contig2214.5866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MDPNRIFMPEQIEVHRDLPGILKEYTKAVIRENPRSEEEIIAFSLNYFKA
KIDNN
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mRNA from alignment at H-paniculata_contig2214:13066..14206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2214.5866.1 ID=mRNA_H-paniculata_contig2214.5866.1|Name=mRNA_H-paniculata_contig2214.5866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1141bp|location=Sequence derived from alignment at H-paniculata_contig2214:13066..14206+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCTAATCGGATATTCATGCCAGAGCAAATTGAGGTTTGTGCGTA
TCTTCATCTGAATCTTCGTTCGTTGAAAAAAATCACATCTCCATTCGGTG
ACTTTTCCCGTGCCGGGGCCAGAAACGGAGCGTGATGTTGTTGGCGAGGA
AGTCTATAATGGAGAGAATTAACTCATTCCATAGATACGCTCGCTCGAGC
ATAATATTTCACCCCCGGACAAATGCGAATACTTGGCGTACTCGCCACGA
AAATTGGAAAGTGTTCGCATGAGTTCAACTCTAAGTCGTGTGGCTTTGTC
AAATTGTCCGTATTCCAGTCGCCTTCCCGAGTGTGCGGATAAGAGATACC
AACAGCAACCCTAACCCTAAAACCCTGACTACATTCGCTAATAGTATGGT
AAACCTAATCACTGTGAATCAGAACAAGCTCGTCTATTTTATGTGCCTCG
GACCATCCACAGCTGCCAATAATACTCGTAAATCGAAGGGACAGGGGTGG
ATACTTTTAGTCCATGTTTCCGCTCATTCTAAAACTCAGGCAAATACTTT
TTCATTTTCGTAGCGAATATGCCGAATATTCGTCAGTGTCTGACGGGTAT
AATATATGTCAAGCTTGCAAGAAATTTTCTCTCATGAAAGAATAGCACGG
AACTGGTGTGTACGTCGTGGGGAGCTAAAATGTATACACCTCGAAAACGA
TCCTTGACAAGAGGGGTGAATTGCCGCCAAGTGCAGTAAAAGTTATAGCG
AATAACAAGCGAGAGTGCGATCGCACCAGGGCCCTATCTAAGCTACAAGC
AACGCTAGTGCGTGCAGCACTAGATGCTATCATTCTCTCCCACGGGGTTG
CCTTTCTTGACGCAACTTCATTAATTACACTCCATGGTGAATCGTATCTT
ACATTGCTCAGACACTACTGCACCCCGCCACGATTGAAACATATCTCCGA
TATCATTTTGCGGTCATCACTACACGTTGCCGATTATCACTACGATATCC
TGCCTGACAACTTAGGTACACCGAGATCTTCCAGGAATCCTGAAGGAATA
TACCAAAGCCGTCATCCGGGAGAATCCTAGAAGTGAGGAGGAAATCATCG
CATTTTCCCTCAATTACTTCAAGGCCAAGATTGACAACAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2214:13066..14206+

>mRNA_H-paniculata_contig2214.5866.1 ID=mRNA_H-paniculata_contig2214.5866.1|Name=mRNA_H-paniculata_contig2214.5866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig2214:13066..14206+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCTAATCGGATATTCATGCCAGAGCAAATTGAGATGGATCCTAA
TCGGATATTCATGCCAGAGCAAATTGAGGTACACCGAGATCTTCCAGGAA
TCCTGAAGGAATATACCAAAGCCGTCATCCGGGAGAATCCTAGAAGTGAG
GAGGAAATCATCGCATTTTCCCTCAATTACTTCAAGGCCAAGATTGACAA
CAACGTACACCGAGATCTTCCAGGAATCCTGAAGGAATATACCAAAGCCG
TCATCCGGGAGAATCCTAGAAGTGAGGAGGAAATCATCGCATTTTCCCTC
AATTACTTCAAGGCCAAGATTGACAACAAC
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