mRNA_H-paniculata_contig22138.5864.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22138.5864.1
Unique NamemRNA_H-paniculata_contig22138.5864.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22138.5864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22138contigH-paniculata_contig22138:2232..2975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size744
Cds size459
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.4737287-UTR-H-paniculata_contig22138:2231..25161622929609.4737287-UTR-H-paniculata_contig22138:2231..2516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22138 2232..2516 +
1691480934.630067-UTR-H-paniculata_contig22138:2231..25161691480934.630067-UTR-H-paniculata_contig22138:2231..2516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22138 2232..2516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.6092122-CDS-H-paniculata_contig22138:2516..29751622929609.6092122-CDS-H-paniculata_contig22138:2516..2975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22138 2517..2975 +
1691480934.6394298-CDS-H-paniculata_contig22138:2516..29751691480934.6394298-CDS-H-paniculata_contig22138:2516..2975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22138 2517..2975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22138.5864.1prot_H-paniculata_contig22138.5864.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22138 2517..2975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22138.5864.1

>prot_H-paniculata_contig22138.5864.1 ID=prot_H-paniculata_contig22138.5864.1|Name=mRNA_H-paniculata_contig22138.5864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MNARLTKNSTARRLFIVTPLKRSVASMADQEILENPAPFHKEICICLSPM
QLLSPRVLLKNVFYPHNTEQSEALLLPRVPTFSRDTFFVYRGTKGKTPAC
IVHAYTGQILSTKAWLEVVSSTFFGYSCKLVGEQGPHTTLLFSATKRVNA
HAT
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mRNA from alignment at H-paniculata_contig22138:2232..2975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22138.5864.1 ID=mRNA_H-paniculata_contig22138.5864.1|Name=mRNA_H-paniculata_contig22138.5864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=744bp|location=Sequence derived from alignment at H-paniculata_contig22138:2232..2975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCCATTTGAACTTGAACTTTTCAATTGTGGAGAGACATTATTCGAAGT
TTTGTCGAATGATACACGAATGTTACAAAAATGTACGGTTCCATTTACCC
GTGTTTACGACACACATCGTTACTGGAAGAGACGCCCACCCACCTTGACA
TCTTGAAAATGCCGGCCGCGTGATTCATTCAACCGTTTGAACACCTCGCT
GCATGGGGGGCAACCCCCTTCGGGTATCACGCCGGACAGATCAGTACCGG
TCGAAACTCCTGTCGTCTGATAACCCCAAGCGAACATGAACGCCAGACTC
ACCAAAAACAGCACAGCCAGGAGGCTGTTCATAGTCACCCCTCTAAAACG
CTCCGTTGCAAGTATGGCGGACCAGGAGATACTAGAGAACCCAGCGCCTT
TTCATAAGGAGATATGTATATGCCTCTCTCCCATGCAGCTCTTGAGCCCG
CGAGTTCTCCTTAAAAACGTTTTCTATCCTCACAACACGGAGCAATCTGA
GGCGCTGTTACTCCCCCGGGTTCCCACTTTCTCACGAGACACTTTCTTCG
TCTATCGTGGGACTAAGGGCAAGACTCCCGCCTGTATTGTACATGCCTAC
ACAGGACAAATACTATCAACTAAAGCTTGGCTCGAAGTGGTTTCTTCGAC
TTTCTTCGGTTATAGCTGCAAGCTGGTGGGCGAGCAGGGTCCTCACACCA
CTCTGTTGTTTTCTGCGACCAAGCGCGTGAACGCTCACGCCACT
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Coding sequence (CDS) from alignment at H-paniculata_contig22138:2232..2975+

>mRNA_H-paniculata_contig22138.5864.1 ID=mRNA_H-paniculata_contig22138.5864.1|Name=mRNA_H-paniculata_contig22138.5864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig22138:2232..2975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGCCAGACTCACCAAAAACAGCACAGCCAGGAGGCTGTTCATAGT
CACCCCTCTAAAACGCTCCGTTGCAAGTATGGCGGACCAGGAGATACTAG
AGAACCCAGCGCCTTTTCATAAGGAGATATGTATATGCCTCTCTCCCATG
CAGCTCTTGAGCCCGCGAGTTCTCCTTAAAAACGTTTTCTATCCTCACAA
CACGGAGCAATCTGAGGCGCTGTTACTCCCCCGGGTTCCCACTTTCTCAC
GAGACACTTTCTTCGTCTATCGTGGGACTAAGGGCAAGACTCCCGCCTGT
ATTGTACATGCCTACACAGGACAAATACTATCAACTAAAGCTTGGCTCGA
AGTGGTTTCTTCGACTTTCTTCGGTTATAGCTGCAAGCTGGTGGGCGAGC
AGGGTCCTCACACCACTCTGTTGTTTTCTGCGACCAAGCGCGTGAACGCT
CACGCCACTATGAACGCCAGACTCACCAAAAACAGCACAGCCAGGAGGCT
GTTCATAGTCACCCCTCTAAAACGCTCCGTTGCAAGTATGGCGGACCAGG
AGATACTAGAGAACCCAGCGCCTTTTCATAAGGAGATATGTATATGCCTC
TCTCCCATGCAGCTCTTGAGCCCGCGAGTTCTCCTTAAAAACGTTTTCTA
TCCTCACAACACGGAGCAATCTGAGGCGCTGTTACTCCCCCGGGTTCCCA
CTTTCTCACGAGACACTTTCTTCGTCTATCGTGGGACTAAGGGCAAGACT
CCCGCCTGTATTGTACATGCCTACACAGGACAAATACTATCAACTAAAGC
TTGGCTCGAAGTGGTTTCTTCGACTTTCTTCGGTTATAGCTGCAAGCTGG
TGGGCGAGCAGGGTCCTCACACCACTCTGTTGTTTTCTGCGACCAAGCGC
GTGAACGCTCACGCCACT
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