mRNA_H-paniculata_contig22130.5862.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22130.5862.1
Unique NamemRNA_H-paniculata_contig22130.5862.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22130.5862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22130contigH-paniculata_contig22130:2317..2779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size351
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.283395-UTR-H-paniculata_contig22130:2316..24281622929609.283395-UTR-H-paniculata_contig22130:2316..2428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22130 2317..2428 +
1691480934.56287-UTR-H-paniculata_contig22130:2316..24281691480934.56287-UTR-H-paniculata_contig22130:2316..2428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22130 2317..2428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.30025-CDS-H-paniculata_contig22130:2428..27791622929609.30025-CDS-H-paniculata_contig22130:2428..2779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22130 2429..2779 +
1691480934.572532-CDS-H-paniculata_contig22130:2428..27791691480934.572532-CDS-H-paniculata_contig22130:2428..2779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22130 2429..2779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22130.5862.1prot_H-paniculata_contig22130.5862.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22130 2429..2779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22130.5862.1

>prot_H-paniculata_contig22130.5862.1 ID=prot_H-paniculata_contig22130.5862.1|Name=mRNA_H-paniculata_contig22130.5862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MEIVNYLYCTHVYTKKGKNDCCTSPKKTKKNDKCHPTRTPPVRYNSKKQI
FFAAIYSQLIPTPGCLASQASTAPPVSLIHESINPAPFMDLTEVEVSCMT
SIWARWSPPPPPLSPP*
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mRNA from alignment at H-paniculata_contig22130:2317..2779+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22130.5862.1 ID=mRNA_H-paniculata_contig22130.5862.1|Name=mRNA_H-paniculata_contig22130.5862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=463bp|location=Sequence derived from alignment at H-paniculata_contig22130:2317..2779+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGTCAAGGCTCACGGTTCTCCAGAGAAATGCAGGTGATAACGAAAAC
TGATCGTCACGTATTGGAGGGGAAAAAATATCGATCTTATTCATCACCAG
AACACTAGTTACATGGAAATTGTAAATTATTTGTACTGTACGCATGTGTA
CACTAAAAAGGGAAAAAATGATTGTTGCACGTCACCAAAAAAAACAAAAA
AAAACGACAAATGTCATCCCACACGTACGCCGCCTGTACGTTACAACAGC
AAGAAGCAGATTTTCTTTGCTGCTATATATAGCCAACTAATACCCACTCC
CGGATGTTTAGCGAGCCAAGCAAGCACTGCTCCTCCCGTTTCGCTCATAC
ATGAATCGATCAACCCAGCCCCCTTCATGGATCTAACTGAAGTTGAGGTC
AGCTGCATGACCTCAATATGGGCACGATGGAGTCCCCCCCCCCCCCCCCT
CTCACCCCCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig22130:2317..2779+

>mRNA_H-paniculata_contig22130.5862.1 ID=mRNA_H-paniculata_contig22130.5862.1|Name=mRNA_H-paniculata_contig22130.5862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig22130:2317..2779+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAATTGTAAATTATTTGTACTGTACGCATGTGTACACTAAAAAGGG
AAAAAATGATTGTTGCACGTCACCAAAAAAAACAAAAAAAAACGACAAAT
GTCATCCCACACGTACGCCGCCTGTACGTTACAACAGCAAGAAGCAGATT
TTCTTTGCTGCTATATATAGCCAACTAATACCCACTCCCGGATGTTTAGC
GAGCCAAGCAAGCACTGCTCCTCCCGTTTCGCTCATACATGAATCGATCA
ACCCAGCCCCCTTCATGGATCTAACTGAAGTTGAGGTCAGCTGCATGACC
TCAATATGGGCACGATGGAGTCCCCCCCCCCCCCCCCTCTCACCCCCATA
AATGGAAATTGTAAATTATTTGTACTGTACGCATGTGTACACTAAAAAGG
GAAAAAATGATTGTTGCACGTCACCAAAAAAAACAAAAAAAAACGACAAA
TGTCATCCCACACGTACGCCGCCTGTACGTTACAACAGCAAGAAGCAGAT
TTTCTTTGCTGCTATATATAGCCAACTAATACCCACTCCCGGATGTTTAG
CGAGCCAAGCAAGCACTGCTCCTCCCGTTTCGCTCATACATGAATCGATC
AACCCAGCCCCCTTCATGGATCTAACTGAAGTTGAGGTCAGCTGCATGAC
CTCAATATGGGCACGATGGAGTCCCCCCCCCCCCCCCCTCTCACCCCCAT
AA
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