mRNA_H-paniculata_contig2213.5861.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2213.5861.1
Unique NamemRNA_H-paniculata_contig2213.5861.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Match: A0A6H5KSL4_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL4_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.750e-23
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   16 CKKLLSMLGVHQWRPRQPGQRGLRILSLDGGGTRGVMSIALLREVLEGFDKDVYEV 183
              KLLSMLGVH W PRQPGQ+GLRILSLDGGGTRGV++IALLREVL+G DKDV+EV
Sbjct: 1228 ASKLLSMLGVHHWTPRQPGQKGLRILSLDGGGTRGVLTIALLREVLKGLDKDVHEV 1283
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BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Match: D8LL86_ECTSI (Similar to Calcium-independent phospholipase A2-gamma, C terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL86_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.430e-21
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:   34 MLGVHQWRPRQPGQRGLRILSLDGGGTRGVMSIALLREVLEGFDKDVYEV 183
            MLGVH W PRQPGQ+GLRILSLDGGGTRGV++IALLREVL+GFDKDV+EV
Sbjct:    1 MLGVHHWTPRQPGQKGLRILSLDGGGTRGVLTIALLREVLKGFDKDVHEV 50
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BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Match: A0A4D9DA09_9STRA (PNPLA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA09_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.130e-19
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 PSFFPCKKLLSMLGVHQWRPRQPGQRGLRILSLDGGGTRGVMSIALLREVLEGFDKDVYE 180
            P+F  C KLL+ LG ++WRPRQPGQRGLRILS DGGGTRGV+S+ALL++V++   KDV+E
Sbjct:  922 PTFATCHKLLAALGHNEWRPRQPGQRGLRILSFDGGGTRGVLSVALLKQVMKRVGKDVFE 981
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BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Match: A0A4D9CW07_9STRA (PNPLA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW07_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.950e-16
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   22 KLLSMLGVHQWRPRQPGQRGLRILSLDGGGTRGVMSIALLREVLEGFDKDVYEV 183
            KLLS++G H+W+PRQ GQ+GLRILSLDGGGTRGVM+IALL  ++E   K+V+E+
Sbjct:  186 KLLSIVGYHEWKPRQAGQKGLRILSLDGGGTRGVMTIALLSHLIEATGKEVHEL 239
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BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Match: K8Z805_NANGC (Calcium-independent phospholipase a2-gamma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z805_NANGC)

HSP 1 Score: 81.3 bits (199), Expect = 1.990e-16
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   22 KLLSMLGVHQWRPRQPGQRGLRILSLDGGGTRGVMSIALLREVLEGFDKDVYEV 183
            KLLS++G H+W+PRQ GQ+GLRILSLDGGGTRGVM+IALL  ++E   K+V+E+
Sbjct:  556 KLLSIVGYHEWKPRQAGQKGLRILSLDGGGTRGVMTIALLSHLIEATGKEVHEL 609
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BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Match: A0A7S2R3S3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3S3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.490e-11
Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   37 LGVHQWRPRQPGQRGLRILSLDGGGTRGVMSIALLREVLEGFDKDVYEV 183
            LGV +WRPR P  +G+R+L LDGGGTRGV++IA+L+++     KD++E+
Sbjct:  209 LGVRKWRPRSPHHKGVRVLCLDGGGTRGVLTIAVLQQISRAIGKDIHEI 257
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BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Match: A0A7S2R4X2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4X2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.040e-11
Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   37 LGVHQWRPRQPGQRGLRILSLDGGGTRGVMSIALLREVLEGFDKDVYEV 183
            LGV +WRPR P  +G+R+L LDGGGTRGV++IA+L+++     KD++E+
Sbjct:  209 LGVRKWRPRSPHHKGVRVLCLDGGGTRGVLTIAVLQQISRAIGKDIHEI 257
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BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Match: U6MBQ5_EIMMA (Patatin-like phospholipase domain-containing protein, putative n=1 Tax=Eimeria maxima TaxID=5804 RepID=U6MBQ5_EIMMA)

HSP 1 Score: 67.0 bits (162), Expect = 2.080e-11
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   40 GVHQWRPRQPGQRGLRILSLDGGGTRGVMSIALLREVLEGFDKDV 174
            G  QWRPR+PGQRGLRIL+LDGGGTRGV+++ALL+E+      D+
Sbjct: 1479 GPGQWRPRRPGQRGLRILALDGGGTRGVLTVALLKEIAAAVGGDL 1523
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BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Match: A0A0G4F2X6_VITBC (PNPLA domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F2X6_VITBC)

HSP 1 Score: 66.6 bits (161), Expect = 2.840e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   16 CKKLLSMLGVHQ-WRPRQPGQRGLRILSLDGGGTRGVMSIALLREVLEGFDKDVYEV 183
              KLL+ +G +  W PR PGQRGLRIL LDGGGTRGV++IA+L+ ++    ++V+EV
Sbjct: 1399 ANKLLAAMGCNNDWHPRVPGQRGLRILCLDGGGTRGVLTIAILKFIVAVMGREVHEV 1455
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BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Match: A0A5J4YQ08_PORPP (Calcium-independent phospholipase A2-gamma n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQ08_PORPP)

HSP 1 Score: 66.2 bits (160), Expect = 3.860e-11
Identity = 26/56 (46.43%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   16 CKKLLSMLGVHQWRPRQPGQRGLRILSLDGGGTRGVMSIALLREVLEGFDKDVYEV 183
             +++L+ LGV++WRPR PGQRG+R+L +DGGGTR VMS  +L+ +     ++++E+
Sbjct:  813 ARRVLAALGVNEWRPRIPGQRGIRVLCIDGGGTRAVMSFEMLKHLKRITGREIHEL 868
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2213.5861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL4_9PHAE8.750e-2382.14PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LL86_ECTSI1.430e-2186.00Similar to Calcium-independent phospholipase A2-ga... [more]
A0A4D9DA09_9STRA1.130e-1966.67PNPLA domain-containing protein n=2 Tax=Monodopsid... [more]
A0A4D9CW07_9STRA1.950e-1666.67PNPLA domain-containing protein n=1 Tax=Nannochlor... [more]
K8Z805_NANGC1.990e-1666.67Calcium-independent phospholipase a2-gamma n=2 Tax... [more]
A0A7S2R3S3_9STRA1.490e-1153.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2R4X2_9STRA2.040e-1153.06Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
U6MBQ5_EIMMA2.080e-1164.44Patatin-like phospholipase domain-containing prote... [more]
A0A0G4F2X6_VITBC2.840e-1154.39PNPLA domain-containing protein n=1 Tax=Vitrella b... [more]
A0A5J4YQ08_PORPP3.860e-1146.43Calcium-independent phospholipase A2-gamma n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2213contigH-paniculata_contig2213:20820..21014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue9.7e-18
Seed eggNOG ortholog2880.D8LL86
Preferred namePNPLA8
KEGG koko:K16815
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001516,GO:0001676,GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006690,GO:0006692,GO:0006693,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0009056,GO:0009058,GO:0009395,GO:0009987,GO:0010876,GO:0012505,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016042,GO:0016053,GO:0016298,GO:0016787,GO:0016788,GO:0017076,GO:0019369,GO:0019637,GO:0019752,GO:0030554,GO:0031090,GO:0031903,GO:0031984,GO:0032309,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033559,GO:0034638,GO:0035639,GO:0036094,GO:0036151,GO:0036152,GO:0042175,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046337,GO:0046338,GO:0046394,GO:0046434,GO:0046456,GO:0046457,GO:0046470,GO:0046475,GO:0046486,GO:0046503,GO:0046717,GO:0046903,GO:0046942,GO:0047499,GO:0050482,GO:0051179,GO:0051234,GO:0052689,GO:0071702,GO:0071704,GO:0071715,GO:0072330,GO:0097159,GO:0097164,GO:0097367,GO:0098588,GO:0098805,GO:0098827,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901571,GO:1901575,GO:1901576,GO:1903963
EggNOG free text desc.phosphatidylethanolamine catabolic process
EggNOG OGsKOG4231@1,KOG4231@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.2492864-CDS-H-paniculata_contig2213:20819..210141622929609.2492864-CDS-H-paniculata_contig2213:20819..21014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2213 20820..21014 +
1691480934.5497177-CDS-H-paniculata_contig2213:20819..210141691480934.5497177-CDS-H-paniculata_contig2213:20819..21014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2213 20820..21014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2213.5861.1prot_H-paniculata_contig2213.5861.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2213 20820..21014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2213.5861.1

>prot_H-paniculata_contig2213.5861.1 ID=prot_H-paniculata_contig2213.5861.1|Name=mRNA_H-paniculata_contig2213.5861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
PSFFPCKKLLSMLGVHQWRPRQPGQRGLRILSLDGGGTRGVMSIALLREV
LEGFDKDVYEVPMA*
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mRNA from alignment at H-paniculata_contig2213:20820..21014+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2213.5861.1 ID=mRNA_H-paniculata_contig2213.5861.1|Name=mRNA_H-paniculata_contig2213.5861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig2213:20820..21014+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTCTTTTTTCCCCTGCAAAAAGCTACTGTCAATGCTGGGAGTGCACCA
GTGGCGACCGAGACAGCCGGGGCAAAGAGGATTGAGAATACTGTCGTTGG
ACGGCGGCGGCACGCGCGGGGTGATGTCCATCGCTCTCCTGCGAGAAGTG
CTGGAAGGGTTCGACAAGGACGTCTATGAGGTACCTATGGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2213:20820..21014+

>mRNA_H-paniculata_contig2213.5861.1 ID=mRNA_H-paniculata_contig2213.5861.1|Name=mRNA_H-paniculata_contig2213.5861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig2213:20820..21014+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTCTTTTTTCCCCTGCAAAAAGCTACTGTCAATGCTGGGAGTGCACCA
GTGGCGACCGAGACAGCCGGGGCAAAGAGGATTGAGAATACTGTCGTTGG
ACGGCGGCGGCACGCGCGGGGTGATGTCCATCGCTCTCCTGCGAGAAGTG
CTGGAAGGGTTCGACAAGGACGTCTATGAGGTACCTATGGCATGACCTTC
TTTTTTCCCCTGCAAAAAGCTACTGTCAATGCTGGGAGTGCACCAGTGGC
GACCGAGACAGCCGGGGCAAAGAGGATTGAGAATACTGTCGTTGGACGGC
GGCGGCACGCGCGGGGTGATGTCCATCGCTCTCCTGCGAGAAGTGCTGGA
AGGGTTCGACAAGGACGTCTATGAGGTACCTATGGCATGA
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