mRNA_H-paniculata_contig2213.5860.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2213.5860.1 vs. uniprot
Match: D8LL92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL92_ECTSI) HSP 1 Score: 315 bits (806), Expect = 1.170e-101 Identity = 162/296 (54.73%), Postives = 203/296 (68.58%), Query Frame = 1
Query: 202 CRRCTHPLALSPNIAPQDVPGGKILPDPPQFIHILGEDGVEQKLPMASASRFPLWVIEHDA----AGGKRAVEVPGESGDEGWVNPRSYGKMWIPADCPAPSMKLCLGMLTKDGQPRYVMPTVDAVVDKGGKKWRNRGLKTVPSANCWEPVARAASGSLLLSAYVEEKVEGSNTDSIWGPLAENVAVTDAFSDLVAVISDPPEGLDLGEGFHFLVTEVI--GGGPFPMPAC-----GGRVRAFLTDLPNPARILEVPDL-----RDVAEISFDVVAVASGGDSEFLPDVYRGLFAP 1041
CR C+ A ++ P + QFI IL DG EQ+LP+ASAS FPLW I+ D AG K +VPG + + GWVNPRSY ++W+P PAP+MKLCLGML KDG PRYVMP VD VV KGG+KWRNRGL +VP A+ WEPV RAA+GS+ LSAY EE+VEGS TDS+WG +AE + VTDAF+D+V+V++DPPE LD+G GFH LV EV G GP GGRVR FL+D+ PA +L++ ++ R VA + FDVV+VA+GG+SEFLP+VYR F P
Sbjct: 39 CRACSRRQAKGQPAIERERPAER------QFISILSADGTEQRLPVASASSFPLWFIDGDEQVDDAGRKHVTQVPGPNAELGWVNPRSYSELWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLVVSKGGRKWRNRGLNSVPVAHTWEPVERAAAGSVFLSAYAEERVEGSETDSMWGAIAEKLPVTDAFTDIVSVLADPPEELDIGSGFHVLVAEVAVPGSGPGGSSVVAAARDGGRVRVFLSDVSEPADLLDLEEMGKGGIRGVAALGFDVVSVANGGESEFLPEVYRPFFKP 328
BLAST of mRNA_H-paniculata_contig2213.5860.1 vs. uniprot
Match: A0A6U1NKJ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NKJ8_9STRA) HSP 1 Score: 168 bits (425), Expect = 4.550e-45 Identity = 99/261 (37.93%), Postives = 143/261 (54.79%), Query Frame = 1
Query: 286 PQFIHILGEDGVEQKLPMASASRFPLWVIEHDAAGGK---RAVEVPGES---GDEGWVNPRSYGKMWIPADCPAPSMKLCLGMLTKDGQPRYVMPTVDAVVDKGGKKWRNRGLKTVPSANCWEPVARAAS--GSLLLSAYVEEKVEGS--NTDSIWGPLAENVAVTDAFSDLVAVISDPPEGLDLGEGFHFLVTEVIGGGPFPMPACGGRVRAFLTDLPNPARILEVPDL-RDVAEISFDVVAVASGGDSEFLPDVYRGLF 1035
P I I G D LP+ S +P+W +E + G R VPG S G+ G+V+PRSY W+P D P ++ + + KDG+PRY+MP +D +K G+ WRNRGL ++P A WE A L LS + VEG NT++ W +AE V + D LVA+++DPPE ++ GFH L+ I +P+ +RAF+TD P+P R+LE+P + D +E+ + + S G SEFLP VY L+
Sbjct: 58 PSMIKITGGD----MLPVGYTSTWPVWALEDTPSDGSSNCRLSAVPGTSSGEGETGFVDPRSYHLFWVPEDSPPLLLRPAVVAVLKDGKPRYIMPGLDITAEKAGQVWRNRGLNSLPLAGQWESFLDTALDLSKLTLSVFARHPVEGEEGNTNA-WTTIAEKVNLLDTLDRLVAIMADPPE--EISSGFHVLIMP-IADTTLQVPSGTNNMRAFITDYPDPKRMLELPSMGSDGSELDIQIEKILSAGKSEFLPQVYAPLY 310
BLAST of mRNA_H-paniculata_contig2213.5860.1 vs. uniprot
Match: A0A6V1VC31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VC31_HETAK) HSP 1 Score: 162 bits (409), Expect = 7.030e-43 Identity = 93/259 (35.91%), Postives = 145/259 (55.98%), Query Frame = 1
Query: 289 QFIHILGEDGVEQKLPMASASRFPLWVIEHDAAGGKRAVEVPGESGDEGWVNPRSYGKMWIPADCPAPSMKLCLGMLTKDGQPRYVMPTVDAVVDKGGKKWRNRGLKTVPSANCWEPVARAASGSLLLSAYVEEKVEGSNTDSIWGPLA--ENVAVTDAFSDLVAVISD-PPEGLDLGEGFHFLVTEVIGGGPFPMPACG-----GRVRAFLTDLPNPARILEVPDLRDVAE--ISFDVVAVASGGDSEFLPDVYRGLF 1035
Q I ILG +E LP++ AS +P+W++E + G R + P E G WV+P S+ +WIP D P P ++ L +L KDG PRYV+P +D +++GG++WRNRG++T P A+ W+ L +S Y +K+ + DS W A E + A ++A++ + PPE + GFHF+ P P+PA R+R FL D+ +P R+LE+ D + + +V +A G+S+++PDVYR LF
Sbjct: 48 QSISILGSGRMET-LPLSYAS-YPVWMMEPEG-GLARVPDAPEEEGGAAWVDPFSFSDLWIPMDSPQPMLRPTLMVLLKDGNPRYVLPGLDTFLEQGGRRWRNRGMRTFPMAHVWQLFLAVPPEFLKISVYTNQKIPDTINDS-WEKFADCEELGAVGALDAVLALVGEGPPE---IKNGFHFVAA------PLPVPAAPIPQNCQRIRVFLNDIEDPIRLLELEDGAETGGGVLDVEVTEIAPAGESQYIPDVYRQLF 293
BLAST of mRNA_H-paniculata_contig2213.5860.1 vs. uniprot
Match: A0A7S2MPJ3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MPJ3_9STRA) HSP 1 Score: 138 bits (347), Expect = 6.590e-34 Identity = 89/263 (33.84%), Postives = 142/263 (53.99%), Query Frame = 1
Query: 274 LPDPPQFIHILGEDGVEQKLPMASASRFPLWVIEHDAAGGKRAVEVPGESGDEGWVNPRSYGKMWIPADC-PAPSMKLCLGMLTKDGQPRYVMPTVDAVVDK-GGKKWRNRGLKTVPSANCWEPVARAASGSLLLSAYVEEKVEGSNTDSI-----WGPLAENVAVTDAFSDLVAVISDPPEGLDLGEGFHFLVTEVIGGGPFPMPACGGRVRAFLTDLPNPARILEVPDLRDVAEISFDVVA--VASGGDSEFLPDVYRGLF 1035
+P+P + + G D + LP + + P+ V+ D+A + +S EGW NPRS+ ++WI P PS L + L KDG R + P +D + G WRN GLK+ P + W + SL +SAY V + D W L E + + DA ++ + +DPP+ L +GFH +V+ I GG P+P+ G +R +++D P+P+++LE+P++ + + +V+A VASG +SEFLP VYRGL+
Sbjct: 47 IPEPTEIDVLKGVD--TEHLPTSFVAAIPISVVGADSA-----LYRISDSESEGWCNPRSWSQLWISDGLNPTPSACLSVQALLKDGSLRCLFPGLDVTCTRPDGHVWRNLGLKSYPMSQVWLDYSTIPLASLRVSAYCRPVVTLDSDDEPINDRDWVTLTEKLDIQDAIMKVIELAADPPKEL---QGFH-VVSVPIEGGEVPVPSDGEALRVYMSDYPDPSKLLELPNVASGSAV-LEVIAADVASGAESEFLPGVYRGLY 297
BLAST of mRNA_H-paniculata_contig2213.5860.1 vs. uniprot
Match: A0A7S0XQA7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQA7_HEMAN) HSP 1 Score: 100 bits (249), Expect = 3.200e-21 Identity = 59/176 (33.52%), Postives = 90/176 (51.14%), Query Frame = 1
Query: 433 GWVNPRSYGKMWIPADCPAPSMKLCLGMLTKDGQPRYVMPTVDAVVDKGGKKWRNRGLKTVPSANCWEPVARAASGSLLLSAY--------------VEEKVEGSNTDSI--WGPLAENVAVTDAFSDLVAVISDPPEGLDLGEGFHFLVTEVIGGGPFPMPACGGRVRAFLTDLP 912
GWV+P S+G++W+P D P P M+ + + +DG RY+MP +D + GGK W NRG+ + P A+ W V L L+AY ++E+ E D + W L + A +DA + LV +++D G ++G GFH +V G P G R++ LTD P
Sbjct: 3 GWVDPISWGELWLPEDLPLPVMRPAVAAIVRDGVVRYLMPGLDVSIQAGGKLWWNRGMCSFPLASKWADVGACDLARLRLAAYSQSGYKEAEKSTITMKEEGEPEEEDEVTAWEKLWQAPA-SDAITSLVMLLADEG-GSEIGHGFHIVVVPAEGEQLRQAPDAGTRLKVLLTDSP 176
BLAST of mRNA_H-paniculata_contig2213.5860.1 vs. uniprot
Match: A0A7S2EFX4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EFX4_9STRA) HSP 1 Score: 103 bits (256), Expect = 4.390e-21 Identity = 68/222 (30.63%), Postives = 98/222 (44.14%), Query Frame = 1
Query: 325 QKLPMASASRFPLWVIEHDAAGGKRAVEVPGESGDE---GWVNPRSYGKMWIPADCPAPSMKLCLGMLTKDGQPRYVMPTVDAVV-DKGGKKWRNRGLKTVPSANCWEPVARAASGSLLLSAYVEEKVEGSNTDSI---------WGPLAENVAVTDAFSDLVAVISDPPEGLDLGEGFHFLVTEVIGGGPFPMPAC--------------GGRVRAFLTDL 909
Q + + AS +P+W + H+ G+ VP S DE GWV+P S+ ++W+P D P P+ LG++ KDG PRY PTV+ ++ + G W NRGL ++P A W P + L A + D W V A L I++ P +L EGF +LVT P+P+ G RVR L+DL
Sbjct: 73 QTIAVNYASSWPVWYVTHN---GQSVTRVPDASSDELGGGWVSPSSFEQLWLPMDLPPPTASAALGLVLKDGVPRYAFPTVETILATRDGGAWHNRGLNSLPLAKTWMPFFNVVNADTLSLACYHRSMPTEENDXXXXXXXXXEEWKAAFPRTDVKGALDLLFNAIANGPN--ELSEGFCYLVT--------PLPSSDAQSAFLTKSAVIPGQRVRCLLSDL 281
BLAST of mRNA_H-paniculata_contig2213.5860.1 vs. uniprot
Match: A0A7S4R144_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R144_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 3.630e-19 Identity = 78/248 (31.45%), Postives = 112/248 (45.16%), Query Frame = 1
Query: 325 QKLPMASASRFPLWVIEHDAAGGKRAVEVPGESGDE---GWVNPRSYGKMWIPADCPAPSMKLCLGMLTKDGQPRYVMPTVD-AVVDKGGKKWRNRGLKTVPSANCWEPVARAASGSLL-LSAY-----VEEKVEGSNT--DSIWGPLAENVAVTDAFSDLVAVISDPPEGLDLGEGFHFLVTEVIGGGPFP--------MPACGGRVRAFLTDLPNPARILEVPDLRDVAEISFDVVA--VASGGDS 1002
Q + + AS +P+W + H+ G+ VP S DE GWV+P S+ ++W+P D P P+ LG++ KDG PRY PTV+ A+ + G NRGL ++P A W + L L+ Y EE E D W V A L I++ P +L EGF FL+T + P +P G VR L+DL +PD D D++ VA GG++
Sbjct: 48 QTIAVKYASSWPVWYVTHN---GQSVTRVPDGSSDELGGGWVSPSSFEQLWLPMDLPPPTASAALGLVLKDGVPRYAFPTVETALATRDGGARHNRGLNSLPLAKTWLQFFNVVNADTLSLACYHRSMPTEENDEDDEQKQDEEWKAAFPRTDVKGALDLLFNAIANGPN--ELSEGFCFLITPLPSSDTQPAFLSKQAVIP--GQCVRCLLSDLDT------MPDDDDDMRAVCDILVHNVAPGGEN 282
BLAST of mRNA_H-paniculata_contig2213.5860.1 vs. uniprot
Match: A0A0M0K6T8_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K6T8_9EUKA) HSP 1 Score: 84.3 bits (207), Expect = 4.230e-15 Identity = 61/217 (28.11%), Postives = 98/217 (45.16%), Query Frame = 1
Query: 502 LCLGMLTKDGQPRYVMPTVDAVVDKGGKKWRNRGLKTVPSANCWEPVARAASGSLLLSAYV---------------------------EEKVEGSNTDSI--WGPLAENVAVTDAFSDLVAVISDPPEGLD---LGEGFHFLVTEVIG-GGPFPMPAC--GGRVRAFLTDLPNPARILEVPDLRDVA----EISFDVVAVASGGDSEFLPDVYRGLF 1035
+ +G++ ++G+PRY+ PT+D +D GK+WRNRG+ +VP A W + + +L LS++V K G + W ++ V DA + A + + P+ L LG+GF FL+ + G P A GGR+R L+DL + + D R+ A + + V G DS +LP YR L+
Sbjct: 1 MAIGLVLRNGEPRYIFPTIDTYLDAAGKRWRNRGIFSVPLAKTWLHYGESPADNLRLSSFVIAPTLAEGDATAAPTAXXXXXXXXXXXXSKASGRTWERFGQWEQCMDHQQVLDALDEAFAALDNLPDALSRTSLGQGFCFLIAPLPDKGAMLPETALRPGGRLRLLLSDLEDWGT--DGNDGREPAWQYGDCELSMYTVPPGRDSPYLPTPYRELY 215 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2213.5860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2213.5860.1 >prot_H-paniculata_contig2213.5860.1 ID=prot_H-paniculata_contig2213.5860.1|Name=mRNA_H-paniculata_contig2213.5860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp MHSPGNYLMVVALATQQVCAFMICPPRLTTTARATTTARCRRCTHPLALSback to top mRNA from alignment at H-paniculata_contig2213:1078..6959+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2213.5860.1 ID=mRNA_H-paniculata_contig2213.5860.1|Name=mRNA_H-paniculata_contig2213.5860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5882bp|location=Sequence derived from alignment at H-paniculata_contig2213:1078..6959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2213:1078..6959+ >mRNA_H-paniculata_contig2213.5860.1 ID=mRNA_H-paniculata_contig2213.5860.1|Name=mRNA_H-paniculata_contig2213.5860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig2213:1078..6959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |