mRNA_H-paniculata_contig22129.5859.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22129.5859.1
Unique NamemRNA_H-paniculata_contig22129.5859.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Match: D7FRA5_ECTSI (Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA5_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 4.540e-88
Identity = 149/268 (55.60%), Postives = 181/268 (67.54%), Query Frame = 1
Query:    1 QDSMAFKTIPLPIMGWQGATEQWKTCFHTYNCKIGCALAPPRGGRYVTTIINLQAEGEQSFDSLMKTPQDVKDFFANNYPIICGEEGLSEEQAKNFLNLGPVRLTSTYCSRLNHENVVLLGDAAHSMLASLGQGVQAALEDCKVLSCVLRESSTSASV--KVDIPAALETYNVRRHEDVIAVCTVSELGMGGGRSMRPGFIAQMMVTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMKREERIFKVV-VGVAIGATAFAAR 795
            +D MAFKTI +PIM  +GA E WK  FH  N  IGC +APPR    +T  + L +EG+ SFD+LMKT QDV+DFF + YP   G EG SEE AK FL     +L STYCSRL H ++ L+GDAAHSM ASLGQGV AALEDC+V + VL  ++   +V   VD+P  LE YN RR ED +AVC +SE GMGG RSMRP F AQ+++T+ LNKTLG L PKVF  PSL  IS +  SYGEILR +KRE  + K + V   + A A  AR
Sbjct:  191 EDPMAFKTILIPIMNMEGADEGWKKRFHVTNSDIGCIIAPPRSDGMLTATVVLPSEGKTSFDALMKTTQDVRDFFGHYYPSAFGHEGPSEEVAKEFLERRTQQLRSTYCSRLAHGSIFLIGDAAHSMWASLGQGVNAALEDCQVFAQVLDSATEGKAVGQAVDVPKVLEAYNERRFEDAVAVCELSEEGMGGARSMRPAFAAQLLMTVLLNKTLGLLAPKVFTPPSLMAISGNKMSYGEILRGVKREATVTKALFVAGVVCAVAVVAR 458          
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Match: D8LSY0_ECTSI (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY0_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.070e-44
Identity = 83/169 (49.11%), Postives = 117/169 (69.23%), Query Frame = 1
Query:  307 RLTSTYCSRLNHENVVLLGDAAHSMLASLGQGVQAALEDCKVLSCVL---RESSTSASVKVDIPAALETYNVRRHEDVIAVCTVSELGMGGGRSMRPGFIAQMMVTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMKREERIFKVVV--GVAIGATAFAARF 798
            +L STYCSRL H  +VL+GDAAHSM ASLGQGV +ALEDC+VL+ VL    E   +A+  +D+P ALE +N +R ED  A C +SE GMGG R+ RP F A++ +T+ L+KTLGR+ P++F  PS+  ++ +D  YG+ILR ++RE+ +   ++   VA+   A A RF
Sbjct:    9 QLRSTYCSRLAHGRIVLIGDAAHSMWASLGQGVNSALEDCRVLAQVLDSAAEGEAAAAQGIDVPGALEAFNEQRLEDATAACVLSERGMGGARTFRPMFAARLYLTVLLHKTLGRVAPEMFTPPSIMTVNSADKRYGDILRGVEREDAVASGLLFGTVAMVVAAVATRF 177          
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Match: A0A3C1RTQ1_9CYAN (FAD-dependent monooxygenase n=3 Tax=unclassified Planktothrix TaxID=2648599 RepID=A0A3C1RTQ1_9CYAN)

HSP 1 Score: 126 bits (317), Expect = 4.980e-30
Identity = 89/264 (33.71%), Postives = 141/264 (53.41%), Query Frame = 1
Query:    4 DSMAFKTIPL-PIMGWQGATEQWKTCFHTY-NCKIGCALAPPRGGRYVTTIINLQAEGEQSFDSLMKTPQDVKDFFANNYPIICGEEGLSEEQAKNFL----NLGPVRLTSTYCSRLNHEN-VVLLGDAAHSMLASLGQGVQAALEDCKVLSCVLRESSTSASVKVDIPAALETYNVRRHEDVIAVCTVSELGMGGGRSMRPGFIAQMMVTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMKREERIFKVVVGVAIG 774
            D M FK   L     +  +T  W+ CFHT+ N +    LAPP     +T ++ L  + E +FD + KT  D+   F+  +P I   + + ++  ++ L    +LG +   +T C+  +  N VVL+GDAAHS+ ASLGQG   ALE C++L+ +L   + +      +P AL  Y + R  D  A+  +SE G GG +  R G I      +TL+    +LLPK+F +P+L +++++D  Y EI    K +ER    + G+AIG
Sbjct:  193 DQMTFKICQLGKATNFTNSTPDWEECFHTWPNTQPVTMLAPPNPDGTLTGVLILPQQSEITFDKI-KTENDINALFSAKFPDIFMGKPIPQDWVEDLLAQKVSLGGI---TTICNHFHAGNSVVLVGDAAHSVWASLGQGCNVALESCRILAEILEAHNNN------LPTALPAYTLARKPDTDAIGRLSEQGFGGNK--RAGNIVFFAKVITLS-LFHKLLPKIFPKPALLQLNQADVGYAEIETQWKAQER---QLWGMAIG 440          
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Match: A0A0V7ZJA7_9CYAN (Uncharacterized protein n=1 Tax=Mastigocoleus testarum BC008 TaxID=371196 RepID=A0A0V7ZJA7_9CYAN)

HSP 1 Score: 118 bits (295), Expect = 7.050e-27
Identity = 88/275 (32.00%), Postives = 138/275 (50.18%), Query Frame = 1
Query:    4 DSMAFKTIPL-PIMGWQGATEQWKTCFHTY-NCKIGCALAPPRGGRYVTTIINLQAEGEQSFDSLMKTPQDVKDFFANNYPIICGEEGLSEEQAKNFLNLGP-VRLTSTYCSRLNHEN-VVLLGDAAHSMLASLGQGVQAALEDCKVLSCVLRESSTSASVKVDIPAALETYNVRRHEDVIAVCTVSELGMGGG-RSMRPGFIAQMMVTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMKREER----IFKVVVGVAIGATAFAARFF 801
            D M FK  PL  +     A  QW  CFHT+ + +    LAPP     +  I+ +  EGE +FD L KT  +++  F   +P I   + L E+ AK  L   P     +T CS L+  + VVL+GDA HS+ ASLGQG   ALE C +L+  L + +       D+  AL  Y ++R  D  A   +SE G+G   R ++  F  ++M     ++    +LP +F +P++ +I + D  Y EI + M+ + +    +   ++G AI  + F  + F
Sbjct:  202 DKMMFKVCPLGKVTELPDAQPQWDKCFHTWPSHEPVTILAPPSSDGSLNGILIMPPEGEFTFDKL-KTEAELEALFQEKFPDILAGKSLPEDWAKYLLEQKPSYGGITTICSSLHGGDCVVLVGDAGHSVWASLGQGCNVALESCVILARTLEKYNG------DLTKALPAYTIKRKPDTDANARMSEQGLGNNKRVIKTLFFTKLMAISLFHQ----ILPSLFKKPAIFQIGQPDVRYSEIEQQMQIQNKQLLGVMLFLIGFAIILSLFGLKLF 465          
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Match: UPI001BAE8264 (FAD-dependent monooxygenase n=2 Tax=Acaryochloris TaxID=155977 RepID=UPI001BAE8264)

HSP 1 Score: 111 bits (278), Expect = 1.610e-24
Identity = 85/266 (31.95%), Postives = 135/266 (50.75%), Query Frame = 1
Query:    4 DSMAFKTIPLPIM-GWQGATEQWKTCFHTY-NCKIGCALAPPRGGRYVTTIINLQAEGEQSFDSLMKTPQDVKDFFANNYPII---CGEEGLSEEQAKNFLNLGPVRLT-STYCSRLNH-ENVVLLGDAAHSMLASLGQGVQAALEDCKVLSCVLRESSTSASVKVDIPAALETYNVRRHEDVIAVCTVSELGMGGG-RSMRPGFIAQMMVTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMKREER----IFKVVVGV 765
            D+M +K   L +     GAT  W   FH +   +     APP    ++  ++ L  EGE +FD++ +T  D+   F    P++     + GL  + A++ L+        +T C+R    ++VVLLGDAAHS+  SLGQG  AALE C++ +  L      A  + D+  AL  Y   R  D  AV  +SE+G GG  R+    F+A++   M ++K    LLPK F   +L ++  +D  Y +I R  + +E+    +F +VVG+
Sbjct:  193 DNMMYKICNLGLAENLPGATAGWADAFHVWPGAEPVTMAAPPSADGFIRAVLILPQEGEITFDTI-QTEADISALFKAKLPVVFHNLDQTGLPPDFAQDLLSQKAAHGGFTTLCNRFEDGDSVVLLGDAAHSIWPSLGQGCNAALESCRIFAERL------AQAQGDLSLALPAYTRVRKPDTDAVARLSEIGFGGNKRASNSLFMAKVSTLMLMHK----LLPKWFKGYALFQMGDADVPYADIWRQAQTQEKQLLGLFAIVVGI 447          
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Match: A0A6P0S6X8_9CYAN (FAD-dependent monooxygenase n=4 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0S6X8_9CYAN)

HSP 1 Score: 111 bits (277), Expect = 2.160e-24
Identity = 85/264 (32.20%), Postives = 139/264 (52.65%), Query Frame = 1
Query:    1 QDSMAFKTIPLPIM-GWQGATEQWKTCFHTY-NCKIGCALAPPRGGRYVTTIINLQAEGEQSFDSLMKTPQDVKDFFANNYPIICGE---EGLSEEQAKNFLN----LGPVRLTSTYCSRLNH-ENVVLLGDAAHSMLASLGQGVQAALEDCKVLSCVLRESSTSASVKVDIPAALETYNVRRHEDVIAVCTVSELGMGGG-RSMRPGFIAQMMVTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMKREERIFKVVV 759
            +D+M FK   L +     GATE W +CFHT+ + +    LAPP+    +  ++ L  EGE +++ + +T + V + FA  +P I  E   +GL    A++ L      G V   +T C+     + VVLLGDAAHS+  SLGQG   ALE C++ +       T A  + D+  AL +Y + R  D  A+  +SE+G GG  R+    F A+++  + LNK    L P  F + +L +I  ++ SY +I + ++ + R   +++
Sbjct:  192 RDNMMFKICQLGLAKDLPGATETWTSCFHTWPSVQPITLLAPPKTDGSLNGVLILPQEGEITYEQI-QTEEAVAELFAKKFPDIFPELDQKGLPSGFAQDLLGQKAAYGGV---TTICTGFEGGDGVVLLGDAAHSVWPSLGQGCNVALESCRIFA------ETVAQAQGDLTVALPSYTMIRKPDTDAIARLSEIGFGGNKRATNILFFAKIIAFVFLNK----LFPMWFQKFALFQIGNAEVSYFQIWQQVQIQNRQLLIIL 441          
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Match: UPI001F2C4A8C (FAD-dependent monooxygenase n=2 Tax=Acaryochloris TaxID=155977 RepID=UPI001F2C4A8C)

HSP 1 Score: 110 bits (274), Expect = 5.580e-24
Identity = 82/267 (30.71%), Postives = 138/267 (51.69%), Query Frame = 1
Query:    1 QDSMAFKTIPLPIM-GWQGATEQWKTCFHTY-NCKIGCALAPPRGGRYVTTIINLQAEGEQSFDSLMKTPQDVKDFFANNYPII---CGEEGLSEEQAKNFLNLGPVRL-TSTYCSRLNHEN-VVLLGDAAHSMLASLGQGVQAALEDCKVLSCVLRESSTSASVKVDIPAALETYNVRRHEDVIAVCTVSELGMGGG-RSMRPGFIAQMMVTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMKREERIFKVVVGVAIGA 777
            QDSM +K   L       G  ++W   FHT+ N +    LAPP     +  ++ L   G+ +++++ +T  D+   F   +P +     + GL  + A++ L+        +T C++    + VVLLGDAAHS+  SLGQG   ALE C++ + VL      A  K D+  AL  Y   R  D  A+  +SE+G GG  R+    FIA++++ M L+K    LLP+ F + +L ++  +D  Y +I + ++R+    ++V+   IG+
Sbjct:  192 QDSMMYKICDLGFAKDLPGVEQKWAESFHTWPNAQPLTLLAPPSTDGSLKGVLILPQAGDITYETI-QTEADILALFKEKFPDVFPSLDQAGLPPQFAQDLLSQKAAHGGITTQCNQFEGGDCVVLLGDAAHSVWPSLGQGCNVALESCRIFAEVL------AQTKGDLSLALPAYTAARKPDTDAIARLSEIGFGGNKRASNILFIAKVVILMFLHK----LLPRWFHKYALFQLGDADVPYSKIWQQVQRQNSQLRLVLATLIGS 447          
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Match: B0C034_ACAM1 (FAD_binding_3 domain-containing protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) TaxID=329726 RepID=B0C034_ACAM1)

HSP 1 Score: 108 bits (270), Expect = 2.060e-23
Identity = 84/266 (31.58%), Postives = 129/266 (48.50%), Query Frame = 1
Query:    4 DSMAFKTIPLPIMGW-QGATEQWKTCFHTY-NCKIGCALAPPRGGRYVTTIINLQAEGEQSFDSLMKTPQDVKDFFANNYPII---CGEEGLSEEQAKNFLNLGPVRLT-STYCSRLNHEN-VVLLGDAAHSMLASLGQGVQAALEDCKVLSCVLRESSTSASVKVDIPAALETYNVRRHEDVIAVCTVSELGMGGG-RSMRPGFIAQMMVTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMKREER----IFKVVVGV 765
            D M +K   L +     GAT +W   FH +   +     APP     +  ++ L  EGE +FD++ +T  DV   F    P++     + G      ++ L+        +T C+R    + VVLLGDAAHS+  SLGQG   ALE C++ + VL      A  + D+  AL  Y   R  D  AV  +SE+G GG  R+  P F A++   + ++K    LLPK F   +L +I  +D  Y  I +  + +E+    +F +VVG+
Sbjct:  193 DDMMYKICNLGLAEHLPGATAEWADAFHVWPGAEPVTMAAPPSADGVIRAVLILPQEGEITFDTI-RTEADVSALFKAKLPVVFPNLDQTGFPSHFVQDLLSQKAAHGGFTTMCNRFEDGDCVVLLGDAAHSIWPSLGQGCNVALESCRIFAEVL------AHAQGDLSLALPAYTAARKPDTDAVARLSEIGFGGNKRASNPLFKAKVSTLILMHK----LLPKWFKGYALLQIGNADVPYANIWQQAQSQEKQLLGLFAIVVGI 447          
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Match: B0C0P2_ACAM1 (Kynurenine 3-monooxygenase, putative n=3 Tax=Acaryochloris TaxID=155977 RepID=B0C0P2_ACAM1)

HSP 1 Score: 108 bits (270), Expect = 2.130e-23
Identity = 82/267 (30.71%), Postives = 138/267 (51.69%), Query Frame = 1
Query:    1 QDSMAFKTIPLPIM-GWQGATEQWKTCFHTY-NCKIGCALAPPRGGRYVTTIINLQAEGEQSFDSLMKTPQDVKDFFANNYPII---CGEEGLSEEQAKNFLNLGPVRL-TSTYCSRLNHEN-VVLLGDAAHSMLASLGQGVQAALEDCKVLSCVLRESSTSASVKVDIPAALETYNVRRHEDVIAVCTVSELGMGGG-RSMRPGFIAQMMVTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMKREERIFKVVVGVAIGA 777
            QD+M +K   L       GA E+W   FHT+ N +    LAPP     +  ++ L   G+ ++++L ++  D+   F   +P +     + GL  + A++ L+        +T C++    + VVLLGDAAHS+  SLGQG   ALE C++ + +L      A  K D+  AL  Y   R  D  AV  +SE+G GG  R+    FI+++++ M L+K    LLP+ F + +L ++  +D  Y  I + ++R+    ++V+   IG+
Sbjct:  200 QDNMMYKICDLGFAKNLPGAEEKWAESFHTWPNAQPLTLLAPPSTDGSLKGVLILPQVGDITYETL-QSEADILALFQEKFPDVFPNLEQTGLPSQFAQDLLSQKAAHGGITTQCNQFEGGDCVVLLGDAAHSVWPSLGQGCNVALESCRIFAEIL------AQTKGDLSLALPAYTEARKPDTDAVAQLSEIGFGGNKRASSLLFISKVVILMFLHK----LLPRWFQKYALFQLGDADVPYSNIWQQVQRQNNQLRLVLTTLIGS 455          
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Match: A0A8J7LGG9_9NOST (FAD-dependent monooxygenase n=1 Tax=Dendronalium phyllosphericum CENA369 TaxID=1725256 RepID=A0A8J7LGG9_9NOST)

HSP 1 Score: 87.0 bits (214), Expect = 7.440e-16
Identity = 57/180 (31.67%), Postives = 99/180 (55.00%), Query Frame = 1
Query:  193 MKTPQDVKDFFANNYPIICGEEGLSEEQAKNFLNLGPVRLTSTYCSRLNH-ENVVLLGDAAHSMLASLGQGVQAALEDCKVLSCVLRESSTSASVKVDIPAALETYNVRRHEDVIAVCTVSELGMGGGRSMRPGFIAQMMVTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMK 729
            + + +++ +FF  N+P+I   + ++EE+A+ FLN    R+ +  C+R +  ++V+L+GDAAH++ +S+GQG  AALED  V   +L E S       D+   L+ + VRR  D  A+  + +       S+   FI + ++     K+L RL P+VF    +  I ++   Y EIL + K
Sbjct:  258 LSSSKEILEFFQKNFPVIG--QVMTEEEAEAFLNRPISRILTIRCNRYHQGDSVLLMGDAAHAVSSSIGQGCNAALEDVVVFDNLLNEYSD------DLAETLKQFTVRRQPDGYALVELGDYAFPSSTSLFIEFIFRELIA----KSLHRLFPQVFPPSLVDLIFETTVPYSEILNSYK 425          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22129.5859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRA5_ECTSI4.540e-8855.60Kynurenine 3-Monooxygenase n=1 Tax=Ectocarpus sili... [more]
D8LSY0_ECTSI2.070e-4449.11FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A3C1RTQ1_9CYAN4.980e-3033.71FAD-dependent monooxygenase n=3 Tax=unclassified P... [more]
A0A0V7ZJA7_9CYAN7.050e-2732.00Uncharacterized protein n=1 Tax=Mastigocoleus test... [more]
UPI001BAE82641.610e-2431.95FAD-dependent monooxygenase n=2 Tax=Acaryochloris ... [more]
A0A6P0S6X8_9CYAN2.160e-2432.20FAD-dependent monooxygenase n=4 Tax=unclassified S... [more]
UPI001F2C4A8C5.580e-2430.71FAD-dependent monooxygenase n=2 Tax=Acaryochloris ... [more]
B0C034_ACAM12.060e-2331.58FAD_binding_3 domain-containing protein n=1 Tax=Ac... [more]
B0C0P2_ACAM12.130e-2330.71Kynurenine 3-monooxygenase, putative n=3 Tax=Acary... [more]
A0A8J7LGG9_9NOST7.440e-1631.67FAD-dependent monooxygenase n=1 Tax=Dendronalium p... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22129contigH-paniculata_contig22129:910..3551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score274.2
Seed ortholog evalue6.2e-71
Seed eggNOG ortholog2880.D7FRA5
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG2614@2759
EC1.14.13.9
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons5
Model size801
Cds size792
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22129.5859.1prot_H-paniculata_contig22129.5859.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22129 910..3542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.9441535-CDS-H-paniculata_contig22129:909..10561622929608.9441535-CDS-H-paniculata_contig22129:909..1056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22129 910..1056 -
1691480934.4035797-CDS-H-paniculata_contig22129:909..10561691480934.4035797-CDS-H-paniculata_contig22129:909..1056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22129 910..1056 -
1622929608.9614782-CDS-H-paniculata_contig22129:1852..20881622929608.9614782-CDS-H-paniculata_contig22129:1852..2088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22129 1853..2088 -
1691480934.4174187-CDS-H-paniculata_contig22129:1852..20881691480934.4174187-CDS-H-paniculata_contig22129:1852..2088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22129 1853..2088 -
1622929608.974517-CDS-H-paniculata_contig22129:2419..25381622929608.974517-CDS-H-paniculata_contig22129:2419..2538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22129 2420..2538 -
1691480934.4272768-CDS-H-paniculata_contig22129:2419..25381691480934.4272768-CDS-H-paniculata_contig22129:2419..2538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22129 2420..2538 -
1622929608.994479-CDS-H-paniculata_contig22129:2811..29741622929608.994479-CDS-H-paniculata_contig22129:2811..2974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22129 2812..2974 -
1691480934.4378614-CDS-H-paniculata_contig22129:2811..29741691480934.4378614-CDS-H-paniculata_contig22129:2811..2974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22129 2812..2974 -
1622929609.0104532-CDS-H-paniculata_contig22129:3415..35421622929609.0104532-CDS-H-paniculata_contig22129:3415..3542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22129 3416..3542 -
1691480934.4500325-CDS-H-paniculata_contig22129:3415..35421691480934.4500325-CDS-H-paniculata_contig22129:3415..3542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22129 3416..3542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929609.0311615-UTR-H-paniculata_contig22129:3542..35511622929609.0311615-UTR-H-paniculata_contig22129:3542..3551Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22129 3543..3551 -
1691480934.460643-UTR-H-paniculata_contig22129:3542..35511691480934.460643-UTR-H-paniculata_contig22129:3542..3551Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22129 3543..3551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22129.5859.1

>prot_H-paniculata_contig22129.5859.1 ID=prot_H-paniculata_contig22129.5859.1|Name=mRNA_H-paniculata_contig22129.5859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
MAFKTIPLPIMGWQGATEQWKTCFHTYNCKIGCALAPPRGGRYVTTIINL
QAEGEQSFDSLMKTPQDVKDFFANNYPIICGEEGLSEEQAKNFLNLGPVR
LTSTYCSRLNHENVVLLGDAAHSMLASLGQGVQAALEDCKVLSCVLRESS
TSASVKVDIPAALETYNVRRHEDVIAVCTVSELGMGGGRSMRPGFIAQMM
VTMTLNKTLGRLLPKVFMRPSLTRISKSDTSYGEILRNMKREERIFKVVV
GVAIGATAFAARFF
back to top

mRNA from alignment at H-paniculata_contig22129:910..3551-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22129.5859.1 ID=mRNA_H-paniculata_contig22129.5859.1|Name=mRNA_H-paniculata_contig22129.5859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2642bp|location=Sequence derived from alignment at H-paniculata_contig22129:910..3551- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATTCCATGGCATTCAAGACGATCCCTCTCCCGATCATGGGATGGCA GGGAGCGACCGAGCAGTGGAAGACCTGCTTCCACACGTATAATTGCAAGA TAGGGTGTGCATTGGCCCCTCCCCGAGGAGGTAGGTGTATGTTGTAACTT ATTTTTTTGCATTGGTGTTTTTGTGTGACTCTTGGGTAGATCTTGTGCCG CACGGCCCGCACCGTCGGCTGTATCCAGGGCAGCGCTCCACTAAATGCGG AGTCCTCACCTACCGCAGGTGAAATACGTGGTTTATGGCTTCCCGTAGGA TTTTCGTCTTGAACGTGCGGCCAAGACTGAAGCAAGCTTCAGAAGGTCCA CTAGATGTCCCTGTATCACAATAGCACCGCCAGCGTAAATTAATTGAGCA ATACAATTTCTGTTGCAAGTCCAAAATGGAGGATACCCACCACACATTCA GGACCGGAGGAAACGTTACTGTCGGCTGTGCGCATCCGCCGCGCATAACG TGGTAGATACGTGGATGCCTGTTGATGCTCCGACCTGTGATACTTTTTTG CTTTTGATTGGATCCCGACAGATGAAGATGTGACGACCATCATCAATCTA CAGGCCGAGGGAGAACAATCGTTCGACTCGTTGATGAAAACGCCACAGGA TGTGAAAGACTTCTTCGCCAATAATTACCCTATCATCTGCGGAGAAGAAG GGCTAAGTGAGGAGCAGGCGAAGAATTTCCTCAACCTTGGGTGAATCATG TTCGAAATGTAGGAAGTTGTGGGGGTACGCGTCAACACGGCCATGGAGAA TCGTGGAAGCGCAAGCTGTTGGAACGTTTTCACCTGAACCGCGGCTGTAA TCGTCTAAGCATTCGAAGTTTAGAGTGGACTAAAATATCAGAACCCCGTG CCATCGTTATTCAAAGTTGCGAAGGTGTAGCCCGTTTTCCCCGCGGTGTG TGGTCTTCCTTTCGATCTCGCCTAACGACGGTATCCTGACTTGCTTTGCT TTCGACTACGTAGGCCAGTACGTCTGACAAGTACATACTGCTCGCGGTTG AACCACGAGAACGTTGTGCTTCTTGGCGATGCCGCCCACTCCATGCTGGC GTCGTTGGGGCAAGGGGTGCAGGCAGCTTTGGGTAAGTAAGGCAGGCATA CTACTTTTTGTTTGGACACAAACTTCCCTCCGCATTCGTACAGCAAAAGT CAAACGTGTTGTTTCACGTCATACAGGTGCATAGTTGGTATTCAAAACAA CGTTCACGTATAGAGTCGAGGGTTGCCACCGACAGTAGTATAATATACGT GCAGCACTTGGTACTTGTGGCCAGGCTGCGCGGTGAATGTGCACCATTTT CAAGGTGCTGTTGCTCTTGGCCGCTGGGATATGCCACTTGAATTCGACGA TAAATCCATCTGAAGAACTGATCACTTTCGTCTTCGCACGCGTGTACACG TTCCTGGTGACAGAGGACTGCAAAGTCCTGTCTTGTGTTTTAAGGGAGTC ATCAACATCGGCATCGGTCAAAGTTGACATCCCGGCCGCGTTGGAAACGT ACAATGTGCGAAGACATGAGGATGTCATAGCTGTGTGTACAGTGAGTGAG TTAGGAATGGGGGGAGGCCGCTCCATGCGACCAGGATTCATCGCACAGAT GATGGTGACCATGACTCTCAATAAGACCCTTGGGCGTCTGCTTCCCAAGG TATGTGGTGTGTGTTTTATCCTGTTTGACCTTTTTTCCCCAGGTAAGTGA AGGGAGGTTTCCAGTTGCTCTCGAGGACTGCGACATGCTCAATAGTGTAA TGTTTGTGTATCGGTTGTGGTGAGATTTCCTGCAGCAGAAAAACACCTAA CTGGTGCGATTATCAGCGAAAAGTTATCCAGGAACCAGGAGTGGGCCATG AGCCAAATTGTTGAACTTCACTGTTTGGTTAGAATTTTCTTTAATCTTGC ACAATCTTTATCAAACAATCACAAATGCATGAAAATTTTCGCTTGTCGGA AAGCACATACCGCAAGGGGTCTCACTGCCTGTCCATGTGAGTTCTTCCGG TGTCACTTCAATTTCGGGATGATGCGGAAAATGTATTATCGTAGTCATTT TCTCCCAGGAGTCGAGTAATTGCTCTCTACGGCTGGGTTGACCCATCGGC CATCGTTGCAACAGGGTGCACTGCAAGGCCATATCTGTTGTGAGTTCGCC GTCTGTTTAGTCTTGCTCCAGTCGAGCACGAGATATTTCTGGACTTCATG GCTACTTACTTTAATGTAGACGGTGACGCCTTCTCCCTGAGCCCCGACTC CGATCCCCTTCCTTTTATTTAATTTCAGATACTTTTGTTCCATTGGGGGG GGGCTGCTTATCGTTAACGACTTGCAGTGGTCGGTAGTTTCACATTGAAT TCGCCTCAAATGTTTTGTTCATCGTCTTGGTTCACGCTAACACCGCTAAA AGAGGCCTCCCTGTTACTCCTCAATTCCGGCTTGTTGTCTGACAGGTCTT TATGCGACCGAGTCTCACACGCATTTCCAAGAGTGACACGAGCTATGGAG AAATATTGCGCAATATGAAGCGGGAAGAGAGAATATTCAAAGTCGTAGTT GGTGTTGCGATTGGAGCAACGGCGTTTGCAGCACGTTTTTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22129:910..3551-

>mRNA_H-paniculata_contig22129.5859.1 ID=mRNA_H-paniculata_contig22129.5859.1|Name=mRNA_H-paniculata_contig22129.5859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig22129:910..3551- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATTCAAGACGATCCCTCTCCCGATCATGGGATGGCAGGGAGCGAC
CGAGCAGTGGAAGACCTGCTTCCACACGTATAATTGCAAGATAGGGTGTG
CATTGGCCCCTCCCCGAGGAGGTAGGTATGGCATTCAAGACGATCCCTCT
CCCGATCATGGGATGGCAGGGAGCGACCGAGCAGTGGAAGACCTGCTTCC
ACACGTATAATTGCAAGATAGGGTGTGCATTGGCCCCTCCCCGAGGAGGT
AGGTATGTGACGACCATCATCAATCTACAGGCCGAGGGAGAACAATCGTT
CGACTCGTTGATGAAAACGCCACAGGATGTGAAAGACTTCTTCGCCAATA
ATTACCCTATCATCTGCGGAGAAGAAGGGCTAAGTGAGGAGCAGGCGAAG
AATTTCCTCAACCTTGGATGTGACGACCATCATCAATCTACAGGCCGAGG
GAGAACAATCGTTCGACTCGTTGATGAAAACGCCACAGGATGTGAAAGAC
TTCTTCGCCAATAATTACCCTATCATCTGCGGAGAAGAAGGGCTAAGTGA
GGAGCAGGCGAAGAATTTCCTCAACCTTGGGCCAGTACGTCTGACAAGTA
CATACTGCTCGCGGTTGAACCACGAGAACGTTGTGCTTCTTGGCGATGCC
GCCCACTCCATGCTGGCGTCGTTGGGGCAAGGGGTGCAGGCAGCTTTGGG
CCAGTACGTCTGACAAGTACATACTGCTCGCGGTTGAACCACGAGAACGT
TGTGCTTCTTGGCGATGCCGCCCACTCCATGCTGGCGTCGTTGGGGCAAG
GGGTGCAGGCAGCTTTGGAGGACTGCAAAGTCCTGTCTTGTGTTTTAAGG
GAGTCATCAACATCGGCATCGGTCAAAGTTGACATCCCGGCCGCGTTGGA
AACGTACAATGTGCGAAGACATGAGGATGTCATAGCTGTGTGTACAGTGA
GTGAGTTAGGAATGGGGGGAGGCCGCTCCATGCGACCAGGATTCATCGCA
CAGATGATGGTGACCATGACTCTCAATAAGACCCTTGGGCGTCTGCTTCC
CAAGAGGACTGCAAAGTCCTGTCTTGTGTTTTAAGGGAGTCATCAACATC
GGCATCGGTCAAAGTTGACATCCCGGCCGCGTTGGAAACGTACAATGTGC
GAAGACATGAGGATGTCATAGCTGTGTGTACAGTGAGTGAGTTAGGAATG
GGGGGAGGCCGCTCCATGCGACCAGGATTCATCGCACAGATGATGGTGAC
CATGACTCTCAATAAGACCCTTGGGCGTCTGCTTCCCAAGGTCTTTATGC
GACCGAGTCTCACACGCATTTCCAAGAGTGACACGAGCTATGGAGAAATA
TTGCGCAATATGAAGCGGGAAGAGAGAATATTCAAAGTCGTAGTTGGTGT
TGCGATTGGAGCAACGGCGTTTGCAGCACGTTTTTTCGTCTTTATGCGAC
CGAGTCTCACACGCATTTCCAAGAGTGACACGAGCTATGGAGAAATATTG
CGCAATATGAAGCGGGAAGAGAGAATATTCAAAGTCGTAGTTGGTGTTGC
GATTGGAGCAACGGCGTTTGCAGCACGTTTTTTC
back to top