mRNA_H-paniculata_contig2212.5858.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2212.5858.1
Unique NamemRNA_H-paniculata_contig2212.5858.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Match: D7FQQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQQ8_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 7.390e-90
Identity = 153/269 (56.88%), Postives = 183/269 (68.03%), Query Frame = 2 
Query:  359 TSSPSDANHHPSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIASGTGCHVEAFAKALPN-WTFKPTEYDQARVQDITTTIAAGGYTNILPPERLDVLSDPSVWPRPP-------QDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMGGRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADERGLELTDMAAMPANNFFVTFTKVREVGAGDNSDSVRAGSVGVADRVSAVVAPAKAALLEKLASN 1141
            T   + + HHPSALRNRG I AEL +WL    G   D  H   +LE+ASGTGCHVEAFA  LP  WT++PTEYDQ R+ DI  TI  G ++NI PP  LDV SDPS WPRP           + WDA++C NMIHI+P ECT GLL GAAAGL +GG LF+YGPF L+GLL P+SN +FD SLK RS G WGI+D  WV GLA ++GLELT M  MPANNFFV F KVREV A   +D V      VA+ V+AVV PA+ AL+ K+++ 
Sbjct:    4 TDGEAPSRHHPSALRNRGFIAAELGKWL---GGSTQDAPH---LLEVASGTGCHVEAFAGHLPAFWTYQPTEYDQTRIPDILATIEEGKHSNIRPPVVLDVCSDPSTWPRPAGGETAEGASRRQWDAIVCSNMIHISPQECTGGLLGGAAAGLKVGGHLFIYGPFALNGLLIPDSNKNFDTSLKARSGGSWGIRDAAWVCGLAHDQGLELTAMTLMPANNFFVVFKKVREVAAAAAAD-VEDRKARVAELVAAVVMPAREALVTKVSAK 265
[Close]
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Match: A0A147H2A7_9BURK (SAM-dependent methyltransferase n=1 Tax=Pseudacidovorax intermedius TaxID=433924 RepID=A0A147H2A7_9BURK)

HSP 1 Score: 162 bits (409), Expect = 1.510e-43
Identity = 92/207 (44.44%), Postives = 119/207 (57.49%), Query Frame = 2 
Query:  389 PSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIASGTGCHVEAFAKALPNWTFKPTEYDQARVQDITTTIAAGGYTNILPPERLDVLSDPSVWPRPPQDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMGGRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADERGLELTDMAAMPANNFFVTF 1009
            P+A RN+GPI AEL R +            RG +LE+A+GTG H   FA ALP WT++PTE D A +  I      GG  N+LPP  LDV +    WP  P      D V C NM+HIAP +C  GL++GA   L  GGRL +YGPFV+ G     SNV+FD+ L+ R D  WG++ +  V  +A+  GL L +  AMPANN  + F
Sbjct:    8 PAAERNKGPILAELLRLMPT----------RGRLLEVAAGTGQHAAHFAAALPAWTWQPTEPDAAMLPAIAAR--TGGLPNVLPPLALDVRAP---WPVAPAS---LDGVYCANMLHIAPWDCCAGLMNGAGTALRPGGRLVVYGPFVVDGEPLAASNVAFDEDLR-RRDPAWGLRALAQVQAVAEAAGLALVERTAMPANNLLLAF 195
[Close]
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Match: U585_DROME (UPF0585 protein CG18661 n=16 Tax=melanogaster group TaxID=32346 RepID=U585_DROME)

HSP 1 Score: 151 bits (381), Expect = 3.410e-39
Identity = 86/211 (40.76%), Postives = 116/211 (54.98%), Query Frame = 2 
Query:  386 HPSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIASGTGCHVEAFAKALPNWTFKPTEYDQARVQDITTTIAAGGYTNILPPERLDVLSDPSVWPRPPQDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMGGRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADERGLELTDMAAMPANNFFVTFTKV 1018
            HPSA RN  PI+  L   +       D       +LEIASG+G H    A  LPN TF+PTEY++ +   I          NI PP  +D+  DP  W  PP     +D +   NM+HI+P  C+ GL   A   L  GGR+F YGP+   G+L P+SNV FD+SL+ R D  WG++DI  +  LA E GL+L  +  MP+NN F+T+ K+
Sbjct:   21 HPSADRNSQPISEALLSQV-------DKTTENLQLLEIASGSGQHAGFLAPLLPNITFQPTEYERNQFGSIAAYAGDCPTRNIRPPFHVDITRDPGDWEAPPAPAS-YDYMFNSNMMHISPWSCSIGLFRAAGQLLKKGGRMFTYGPYAQDGILVPQSNVDFDRSLRQR-DASWGVRDIKDLKVLAAENGLQLEKLVKMPSNNKFLTWLKL 222
[Close]
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Match: A0A6P4JGI7_DROKI (UPF0585 protein CG18661 isoform X1 n=5 Tax=montium subgroup TaxID=32352 RepID=A0A6P4JGI7_DROKI)

HSP 1 Score: 150 bits (378), Expect = 9.770e-39
Identity = 86/211 (40.76%), Postives = 117/211 (55.45%), Query Frame = 2 
Query:  386 HPSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIASGTGCHVEAFAKALPNWTFKPTEYDQARVQDITTTIAAGGYTNILPPERLDVLSDPSVWPRPPQDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMGGRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADERGLELTDMAAMPANNFFVTFTKV 1018
            HPSA RN  PI+  L   + R +           +LEIASG+G H    A  LPN TF+PTEY++ ++  I          NI  P  +D+  DP  W  PP  G   D +   NM+HI+P  C+ GL   A   L  GGR+F YGP+   G+L P+SNV FD+SL+ R D  WG++DI  +  +A E GLEL  +  MP+NN F+T+ K+
Sbjct:   23 HPSADRNSQPISEALLAQVDRES-------KNLQLLEIASGSGQHAGFLAPLLPNITFQPTEYERQQLDSIAAYAKDCPTGNIRAPFCVDITQDPRDWEVPPTPGSF-DYMFNSNMMHISPWSCSLGLFRAAGQLLKKGGRMFTYGPYAQDGVLVPQSNVDFDRSLRSR-DASWGVRDIKDLKAVALENGLELEKLVEMPSNNKFLTWLKL 224
[Close]
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Match: A0A6P4EFS1_DRORH (UPF0585 protein CG18661 isoform X2 n=1 Tax=Drosophila rhopaloa TaxID=1041015 RepID=A0A6P4EFS1_DRORH)

HSP 1 Score: 149 bits (375), Expect = 1.720e-38
Identity = 86/211 (40.76%), Postives = 115/211 (54.50%), Query Frame = 2 
Query:  386 HPSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIASGTGCHVEAFAKALPNWTFKPTEYDQARVQDITTTIAAGGYTNILPPERLDVLSDPSVWPRPPQDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMGGRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADERGLELTDMAAMPANNFFVTFTKV 1018
            HPSA RN  PI+  L   + R             +LEIASG+G H    A  LPN TF PTEY++ +   I+         NI  P  +DV  DP  W  PP     +D +   NM+HI+P  C+ GL   A   L  GGR+F YGP+   GLL P+SNV FD+SL+ R D  WG++DI  +  LA + GL+L  +  MP+NN F+T+ K+
Sbjct:    8 HPSADRNSQPISEALLSQIDRST-------QNLQLLEIASGSGQHAGFLAPLLPNITFHPTEYERGQFGSISAYAEECATGNIRAPLHVDVTRDPRDWESPPAPAS-YDYMFNSNMMHISPWACSIGLFRAAGQLLKKGGRMFTYGPYAQDGLLVPQSNVDFDRSLRQR-DASWGVRDIKDLKVLAADNGLQLEKLVEMPSNNKFLTWLKL 209
[Close]
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Match: A0A8B7LN98_DROEL (UPF0585 protein CG18661 isoform X1 n=2 Tax=Drosophila elegans TaxID=30023 RepID=A0A8B7LN98_DROEL)

HSP 1 Score: 149 bits (375), Expect = 2.500e-38
Identity = 86/211 (40.76%), Postives = 118/211 (55.92%), Query Frame = 2 
Query:  386 HPSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIASGTGCHVEAFAKALPNWTFKPTEYDQARVQDITTTIAAGGYTNILPPERLDVLSDPSVWPRPPQDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMGGRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADERGLELTDMAAMPANNFFVTFTKV 1018
            HPSA RN  PI+  L   + R             +LEIASG+G HV   A  LPN TF+PTEY++ + + I+         NI  P  +D+  DP  W  PP     +D +   NM+HI+P  C+ GL   A   L  GGR+F YGP+   G+LAP+SNV FD SL+ R D  WG++DI  +  LA + GL+L  +  MP+NN F+T+ K+
Sbjct:   21 HPSADRNSQPISEALLSQVDRST-------QNLQLLEIASGSGQHVGFLAPLLPNITFQPTEYERGQFESISAYAQDCSTGNIRAPLHVDISRDPKDWENPPVPAS-YDYMFNSNMMHISPWICSIGLFHAAGQLLKKGGRMFTYGPYAQDGVLAPQSNVDFDWSLRQR-DSSWGVRDIRDLKVLAAQNGLQLEKLTEMPSNNKFLTWLKL 222
[Close]
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Match: A0A1W4WDY3_DROFC (UPF0585 protein CG18661 isoform X1 n=2 Tax=Drosophila ficusphila TaxID=30025 RepID=A0A1W4WDY3_DROFC)

HSP 1 Score: 148 bits (374), Expect = 3.480e-38
Identity = 86/211 (40.76%), Postives = 117/211 (55.45%), Query Frame = 2 
Query:  386 HPSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIASGTGCHVEAFAKALPNWTFKPTEYDQARVQDITTTIAAGGYTNILPPERLDVLSDPSVWPRPPQDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMGGRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADERGLELTDMAAMPANNFFVTFTKV 1018
            HPSA RN  PI+  +   + R             +LEIASG+G H    A  LPN TF+PTEY++ +   I+         NI  P  +D+  DP  W  PP     +D +   NM+HI+P  C+ GL   A   L  GGRLF YGP+   G+LAP+SNV FD+SL+ R D  WG++DI  +  LA E GL+L  +  MP+NN F+T+ K+
Sbjct:   21 HPSADRNSQPISEAILSQIDRST-------PNLQLLEIASGSGQHAGFLAPLLPNITFQPTEYERDQFGSISAYAKDCPTGNIRSPFHVDITQDPKDWEAPPSPAS-YDYMFNSNMMHISPWACSIGLFRTAGQLLKKGGRLFTYGPYAQDGVLAPQSNVDFDRSLRQR-DASWGVRDIKDLKVLATENGLQLEKLLEMPSNNKFLTWLKL 222
[Close]
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Match: UPI00190F0162 (DUF938 domain-containing protein n=1 Tax=Ramlibacter algicola TaxID=2795217 RepID=UPI00190F0162)

HSP 1 Score: 145 bits (367), Expect = 1.890e-37
Identity = 86/209 (41.15%), Postives = 113/209 (54.07%), Query Frame = 2 
Query:  383 HHPSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIASGTGCHVEAFAKALPNWTFKPTEYDQARVQDITTTIAAGGYTNILPPERLDVLSDPSVWPRPPQDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMGGRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADERGLELTDMAAMPANNFFVTF 1009
            H P+A RN+ PI A+L   L            RG++LEIASGTG H   FA  LP WT++PT+ D   +  I       G +N+LPP+ LDV      WP      Q +DA+ C NM+HIAP +   GL++GAA  L  GG L  YGP+    +    SN++FD SL+ R D  WGI+++  V   A   GL L    AMPANN  + F
Sbjct:    6 HSPAADRNKEPILAQLQAILG----------ERGTILEIASGTGQHAAWFAAGLPGWTWQPTDADPEMLPAIAERATEAGLSNVLPPQALDVTRP---WPA---FAQKFDAIFCANMLHIAPWQACIGLMAGAARHLATGGLLVTYGPYFERDVAPAPSNLAFDASLRER-DPAWGIRELDEVVAEAARNGLVLAQRQAMPANNLLLVF 197
[Close]
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Match: UPI0013312698 (DUF938 domain-containing protein n=1 Tax=Roseomonas harenae TaxID=2692566 RepID=UPI0013312698)

HSP 1 Score: 145 bits (366), Expect = 2.950e-37
Identity = 95/219 (43.38%), Postives = 117/219 (53.42%), Query Frame = 2 
Query:  356 MTSSPSDANHH-PSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIASGTGCHVEAFAKALPNWTFKPTEYDQARVQDITTTIAAGGYTNILPPERLDVLSDPSVWPRPPQDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMGGRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADERGLELTDMAAMPANNFFVTF 1009
            MTS   DA  H PSA RNR PI A L  WL            RG +LEIASG+G H   FA AL + TF+P++ D A +  I    AA G  N+ P   LD  ++   WP    D     AV+C NMIHIAP E   GLL G+AA L  GG L LYGP+   G     SN +FD  L+ R+   WG++D+  V   A ERG  + D+  MPANN  + F
Sbjct:    1 MTSVEQDARRHAPSAARNRDPILAVLRGWLP----------ERGLVLEIASGSGEHAIHFASALQDLTFQPSDPDPAALASIDGWAAASGAANLRPAVALDAAAES--WPLAQAD-----AVLCINMIHIAPWEAALGLLQGSAAILPPGGPLILYGPYRREGRHTAPSNEAFDADLRGRNPA-WGVRDLEEVARAAAERGFGVPDIREMPANNLMLRF 201
[Close]
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Match: A2WDR0_9BURK (SAM-dependent methyltransferase n=13 Tax=Burkholderia dolosa TaxID=152500 RepID=A2WDR0_9BURK)

HSP 1 Score: 145 bits (365), Expect = 5.320e-37
Identity = 90/217 (41.47%), Postives = 120/217 (55.30%), Query Frame = 2 
Query:  368 PSDANHHPSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIASGTGCHVEAFAKALPNWTFKPTEYDQARVQDITTTIAAGGYTNILPPERLDVLSDPSVWPRPPQDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMGGRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADERGLELTDMAAMPANNFFVTFTKV 1018
            PSD    P+A RNRGPI   L R L            RG++LEIASGTG HV  FA ALP   ++P++ D    + I   +A  G  N+ PP   DV    + WP    DG  +DA++C NMIHIAP  C   L +GA+  L  GG LFLYGP+   G     SN +FD+ L+ R D  WG++D+  V  L  +RG++  ++  MPANN  V F ++
Sbjct:   10 PSDRLSAPAAERNRGPILDVLRRVLPA----------RGTVLEIASGTGQHVVHFAHALPALRWQPSDPDAHARRSIAAWVAHAGVANVAPPLAFDVRD--AQWPA---DG--FDAIVCINMIHIAPWACAEALFAGASRVLWPGGVLFLYGPYRREGRHTAPSNDAFDRQLRSR-DPSWGVRDLETVVALGLDRGIDCIEIVEMPANNLSVVFRRL 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2212.5858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQQ8_ECTSI7.390e-9056.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A147H2A7_9BURK1.510e-4344.44SAM-dependent methyltransferase n=1 Tax=Pseudacido... [more]
U585_DROME3.410e-3940.76UPF0585 protein CG18661 n=16 Tax=melanogaster grou... [more]
A0A6P4JGI7_DROKI9.770e-3940.76UPF0585 protein CG18661 isoform X1 n=5 Tax=montium... [more]
A0A6P4EFS1_DRORH1.720e-3840.76UPF0585 protein CG18661 isoform X2 n=1 Tax=Drosoph... [more]
A0A8B7LN98_DROEL2.500e-3840.76UPF0585 protein CG18661 isoform X1 n=2 Tax=Drosoph... [more]
A0A1W4WDY3_DROFC3.480e-3840.76UPF0585 protein CG18661 isoform X1 n=2 Tax=Drosoph... [more]
UPI00190F01621.890e-3741.15DUF938 domain-containing protein n=1 Tax=Ramlibact... [more]
UPI00133126982.950e-3743.38DUF938 domain-containing protein n=1 Tax=Roseomona... [more]
A2WDR0_9BURK5.320e-3741.47SAM-dependent methyltransferase n=13 Tax=Burkholde... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2212contigH-paniculata_contig2212:17572..21020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.5
Seed ortholog evalue4.4e-75
Seed eggNOG ortholog2880.D7FQQ8
Preferred nameC16orf13
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Protein of unknown function (DUF938)
EggNOG OGs28PA3@1,2QVX9@2759
Ec32 ortholog descriptionProtein of unknown function DUF938
Ec32 orthologEc-01_000160.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1488
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2212.5858.1prot_H-paniculata_contig2212.5858.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2212 17624..20676 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.8036687-UTR-H-paniculata_contig2212:17571..176231622929608.8036687-UTR-H-paniculata_contig2212:17571..17623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2212 17572..17623 +
1691480934.325853-UTR-H-paniculata_contig2212:17571..176231691480934.325853-UTR-H-paniculata_contig2212:17571..17623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2212 17572..17623 +
1622929608.8943582-UTR-H-paniculata_contig2212:20676..210201622929608.8943582-UTR-H-paniculata_contig2212:20676..21020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2212 20677..21020 +
1691480934.39076-UTR-H-paniculata_contig2212:20676..210201691480934.39076-UTR-H-paniculata_contig2212:20676..21020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2212 20677..21020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.8205338-CDS-H-paniculata_contig2212:17623..181421622929608.8205338-CDS-H-paniculata_contig2212:17623..18142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2212 17624..18142 +
1691480934.348622-CDS-H-paniculata_contig2212:17623..181421691480934.348622-CDS-H-paniculata_contig2212:17623..18142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2212 17624..18142 +
1622929608.8394306-CDS-H-paniculata_contig2212:18731..189111622929608.8394306-CDS-H-paniculata_contig2212:18731..18911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2212 18732..18911 +
1691480934.3570383-CDS-H-paniculata_contig2212:18731..189111691480934.3570383-CDS-H-paniculata_contig2212:18731..18911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2212 18732..18911 +
1622929608.8646805-CDS-H-paniculata_contig2212:19388..196521622929608.8646805-CDS-H-paniculata_contig2212:19388..19652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2212 19389..19652 +
1691480934.3683972-CDS-H-paniculata_contig2212:19388..196521691480934.3683972-CDS-H-paniculata_contig2212:19388..19652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2212 19389..19652 +
1622929608.8809843-CDS-H-paniculata_contig2212:20547..206761622929608.8809843-CDS-H-paniculata_contig2212:20547..20676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2212 20548..20676 +
1691480934.381233-CDS-H-paniculata_contig2212:20547..206761691480934.381233-CDS-H-paniculata_contig2212:20547..20676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2212 20548..20676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2212.5858.1

>prot_H-paniculata_contig2212.5858.1 ID=prot_H-paniculata_contig2212.5858.1|Name=mRNA_H-paniculata_contig2212.5858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=364bp
MRHINSANALSTSLFYLLGASFSYSGAVAFLSLKTAERNILPANLQHQPT
SAAVRPLSQGRPANQLLAESRRPSERESVDSSAAPQISGEMMAENVGAVI
HMTSSPSDANHHPSALRNRGPITAELCRWLQRRAGRGDDGQHRGSMLEIA
SGTGCHVEAFAKALPNWTFKPTEYDQARVQDITTTIAAGGYTNILPPERL
DVLSDPSVWPRPPQDGQLWDAVMCCNMIHIAPPECTPGLLSGAAAGLNMG
GRLFLYGPFVLSGLLAPESNVSFDKSLKLRSDGVWGIKDIVWVTGLADER
GLELTDMAAMPANNFFVTFTKVREVGAGDNSDSVRAGSVGVADRVSAVVA
PAKAALLEKLASN*
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mRNA from alignment at H-paniculata_contig2212:17572..21020+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2212.5858.1 ID=mRNA_H-paniculata_contig2212.5858.1|Name=mRNA_H-paniculata_contig2212.5858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3449bp|location=Sequence derived from alignment at H-paniculata_contig2212:17572..21020+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCATTCCTGGAAAATACACATACAGCACCCAGTAGCACAAATGTGGCT
GCATGAGGCACATCAATAGTGCTAATGCTTTGTCTACGAGTCTATTCTAT
CTACTTGGCGCTAGTTTTTCCTATAGCGGTGCGGTCGCGTTCCTATCTCT
AAAAACTGCCGAACGAAACATCTTGCCGGCTAACCTACAGCACCAACCGA
CTTCTGCTGCTGTCCGACCCCTCAGTCAGGGGCGGCCAGCAAACCAGCTG
CTTGCGGAATCTCGTCGGCCTAGCGAACGCGAAAGCGTAGACTCGTCCGC
GGCACCGCAAATATCGGGCGAAATGATGGCAGAAAACGTTGGTGCAGTGA
TTCACATGACCTCTTCGCCAAGCGATGCAAACCACCATCCCAGCGCCCTG
CGGAACCGAGGGCCTATCACAGCTGAGCTTTGCAGATGGCTTCAGAGGAG
GGCGGGGCGTGGTGATGACGGGCAGCATCGCGGGAGTATGCTGGAGATTG
CAAGCGGCACGGGCTGCCATGTAGAGGCATTCGCCAAGGCTTTGCCAAAT
TGGACGTTCAAACCTACTGAGGTCAGTGGAGAAACCTCAGTGGGAAAACC
TGTGTTTTTGCCACCTTGGAGTAGACCAAATGATCAGGATCAACACAAGG
GTTTCAACGAAAGTTGGCGTGTACGTTGCTATCGAAGACTCTATTGTGTA
TCGCGCCGGTTGTAAACGTGCCGGCCCAGGTGTTTGGGATTTGCCCTGAC
TGGTATCGAGCAAGGCATCTCTTCTGTTTTGCGTTGCTTTTCTGAAATAG
CCCGAACAGCCGCCTTTGAAGGAGCCTTGGAGCTAGCTCATTTGGTATAT
CTTAGTTTGCCCACCACGCCCTACACCCTGTGCAGATTGTGTGGGATGCC
CAGCTGTTTTATCGCGATGAGACCGCATTATTTTTAGATCGAAGAAGGCA
AACACACAGGTTCGCGTACAGGAGAATGTTGATAAACAGGAAGCGAGTTT
GCACAATTTTGCATGATGTTGTAGAGCTAAATTTACTTCAGCAACGTCAC
GGCCTACAGCTGCGCGAATCATGTCGAATCCCTCGCATCACCAATTTATA
TGGAAATAAGTCTAATCCAACTGTAATTCAGGTCGTTTGCGTTGGTAAAA
AATCAAGCAGTACGATCAAGCGCGCGTTCAAGATATCACGACCACCATTG
CCGCCGGAGGCTACACCAACATCCTTCCGCCAGAAAGGTTGGACGTGCTC
TCAGACCCTTCAGTGTGGCCTAGGCCGCCTCAGGACGGGCAGCTGTGGGA
CGCCGTGATGTGTTGCAACATGATCCATATCGCTCCTCCGGTAAGACGAT
GAGATGCTGTTTTATGTGCGATGAATACCGGACCAATGCCACACGCACGC
ATTCCCCAACATTCAGCAGAGAGCGATTAAGAAATTGCATTTATTGTAAA
AGGCGGGGGTACACGGTCCAGTATTTTCAAAATCATCCCCTCTGGAATGT
GGAAAGTAGGTTCCTGACATTTCCAAAATCATTCCCAAATACTGACCCCC
TCCCCAACATCGAGTGACTTCTCCATTCATATTTGGGACAGTTCTCTACA
TTTCTCCAAGCCTACCGAATCCTACCGAATTCTTCTTCTTTGAGTAACTC
TCCGTATTTCAACAAGTGACGTATACCTGGTCCACAGTACACCCCTCGAC
CCCACACTCTATACCAATGCCGAAACTTCGCCTCTGTGGGAGCGAATCCA
CCGTGGGAGTATCGTGTTTTCAAGAATCATGAATCGAACAATTCTTATCC
GATATAAAAAACGTCAGGAATGCACGCCCGGCCTGCTCTCCGGAGCGGCC
GCGGGGTTAAACATGGGCGGCCGTCTGTTCCTCTATGGACCCTTCGTGTT
GAGCGGCCTGTTGGCTCCTGAGAGTAACGTCAGCTTCGACAAATCGTTGA
AACTTCGGAGCGATGGCGTGTGGGGTATCAAGGATATCGTATGGGTCACT
GGCCTCGCGGATGAGCGAGGTCTCGAGCTTACGGATATGGCGGCGATGCC
GGCCAATAATTTCTTCGTTACGTTTACCAAGGTATTTCGTGTGTATATAT
GCAGTGTTCTACTTCGTGCCTACAGGGATATATGCTATACGAGGCAGGCT
CTGCAGTAGGTGCACACTTCTCATTGACGCGGGAGTACCACCGTGCCGTC
GCCATGTGGTGTGTAGTTTGAAAGACTACGATTTTGTACCTTTAGTGGGG
TTTGTAGTTGGAATTCAGAGTGAGTGTTCGATATCTATGCGTGTAGGAGA
TGAAGCCTTGTTTCAATTTTAGTTTCAACGTCAAAAACTTCATCGCGAAC
GCTCAACTACGAACCTCGCTAGCGATGGTCGTCGGTCTCAAGTTACGGAG
GTTGACCGGTGAGCGAAATGATCCTCGCCTCAAACCCCTCGTAGCCCGTT
GTTGTGTAATGTCTTCAATTTGTCTTCAGTTTCGAAGATTTCACCATAAG
GTCATTTTTGCTGTGTCCGAAATATTCGTTCAAACGGGTTCAATCGTGCA
TGATTTCTCGTCCATACCTTGTAATTTTTCTCACCGATCTCCTTTTCCAT
CTGATTTCGGACTATATCTCGTACCTAACGGCAAGATGTCATGCACGCTT
CTAACGCGCTTGTACCCAGGAACCGGAAGTCAACGCAATGAATCGCTTGC
GTTGTAGATGCTGCGCTTATTTCCGATGGTTGTATAGTGTTAGTGTCGAG
AAAGTTTATGTAGAAAGCAGAGGAGTGAAAAGGGTATCGGGTTTGACTGC
GAAAATGATCGCGTACCAACTTTTAGGTGCGAAACTCGAGGGCGTACGAA
TTTGTCAGTACCTGTGGCCAGTTAGTTAACGCGCGCCAAACATCTTGATC
CCAACTGTCCGCCAGACCCAACAAAACTACGTCGTTCCATTTGCTCGTAT
TTTCTCTCGTACGGACGCAATACAAGGTGCGGGAAGTTGGCGCCGGTGAC
AATTCTGATTCTGTCCGAGCAGGTTCGGTTGGAGTGGCTGATCGTGTTTC
AGCGGTTGTTGCTCCTGCGAAGGCTGCTTTGTTGGAGAAGCTTGCTTCCA
ATTAGACAAAAAAAAGCGCACTCACGGGGGTGTGCTTACTGATAGGTTTA
TATGTAGGGTCTCGACTATAACGGCAACGACCTTGTTCATGGGATGATAC
CCCACCAGATATATATATATATATATATATATACGTATACAGATTGACAT
CGGTAGAGCGAAACGGATATAATGGGTTTCTACACTGTACAGCTTCATAG
AGGGTGACCCTCGAAGCAGGTAGCTAGGCATGAAGGCATATTGTCGCAGC
TCTCCGTACTGCGTGGCGGAGCCAAGTGGCAGACCAGACCACATCTAATA
ATAGGGGACTACACACTCTTCATTCACTCTTGTAATGACAAAACGACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2212:17572..21020+

>mRNA_H-paniculata_contig2212.5858.1 ID=mRNA_H-paniculata_contig2212.5858.1|Name=mRNA_H-paniculata_contig2212.5858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at H-paniculata_contig2212:17572..21020+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCACATCAATAGTGCTAATGCTTTGTCTACGAGTCTATTCTATCT
ACTTGGCGCTAGTTTTTCCTATAGCGGTGCGGTCGCGTTCCTATCTCTAA
AAACTGCCGAACGAAACATCTTGCCGGCTAACCTACAGCACCAACCGACT
TCTGCTGCTGTCCGACCCCTCAGTCAGGGGCGGCCAGCAAACCAGCTGCT
TGCGGAATCTCGTCGGCCTAGCGAACGCGAAAGCGTAGACTCGTCCGCGG
CACCGCAAATATCGGGCGAAATGATGGCAGAAAACGTTGGTGCAGTGATT
CACATGACCTCTTCGCCAAGCGATGCAAACCACCATCCCAGCGCCCTGCG
GAACCGAGGGCCTATCACAGCTGAGCTTTGCAGATGGCTTCAGAGGAGGG
CGGGGCGTGGTGATGACGGGCAGCATCGCGGGAGTATGCTGGAGATTGCA
AGCGGCACGGGCTGCCATGTAGAGGCATTCGCCAAGGCTTTGCCAAATTG
GACGTTCAAACCTACTGAGATGAGGCACATCAATAGTGCTAATGCTTTGT
CTACGAGTCTATTCTATCTACTTGGCGCTAGTTTTTCCTATAGCGGTGCG
GTCGCGTTCCTATCTCTAAAAACTGCCGAACGAAACATCTTGCCGGCTAA
CCTACAGCACCAACCGACTTCTGCTGCTGTCCGACCCCTCAGTCAGGGGC
GGCCAGCAAACCAGCTGCTTGCGGAATCTCGTCGGCCTAGCGAACGCGAA
AGCGTAGACTCGTCCGCGGCACCGCAAATATCGGGCGAAATGATGGCAGA
AAACGTTGGTGCAGTGATTCACATGACCTCTTCGCCAAGCGATGCAAACC
ACCATCCCAGCGCCCTGCGGAACCGAGGGCCTATCACAGCTGAGCTTTGC
AGATGGCTTCAGAGGAGGGCGGGGCGTGGTGATGACGGGCAGCATCGCGG
GAGTATGCTGGAGATTGCAAGCGGCACGGGCTGCCATGTAGAGGCATTCG
CCAAGGCTTTGCCAAATTGGACGTTCAAACCTACTGAGTACGATCAAGCG
CGCGTTCAAGATATCACGACCACCATTGCCGCCGGAGGCTACACCAACAT
CCTTCCGCCAGAAAGGTTGGACGTGCTCTCAGACCCTTCAGTGTGGCCTA
GGCCGCCTCAGGACGGGCAGCTGTGGGACGCCGTGATGTGTTGCAACATG
ATCCATATCGCTCCTCCGTACGATCAAGCGCGCGTTCAAGATATCACGAC
CACCATTGCCGCCGGAGGCTACACCAACATCCTTCCGCCAGAAAGGTTGG
ACGTGCTCTCAGACCCTTCAGTGTGGCCTAGGCCGCCTCAGGACGGGCAG
CTGTGGGACGCCGTGATGTGTTGCAACATGATCCATATCGCTCCTCCGGA
ATGCACGCCCGGCCTGCTCTCCGGAGCGGCCGCGGGGTTAAACATGGGCG
GCCGTCTGTTCCTCTATGGACCCTTCGTGTTGAGCGGCCTGTTGGCTCCT
GAGAGTAACGTCAGCTTCGACAAATCGTTGAAACTTCGGAGCGATGGCGT
GTGGGGTATCAAGGATATCGTATGGGTCACTGGCCTCGCGGATGAGCGAG
GTCTCGAGCTTACGGATATGGCGGCGATGCCGGCCAATAATTTCTTCGTT
ACGTTTACCAAGGAATGCACGCCCGGCCTGCTCTCCGGAGCGGCCGCGGG
GTTAAACATGGGCGGCCGTCTGTTCCTCTATGGACCCTTCGTGTTGAGCG
GCCTGTTGGCTCCTGAGAGTAACGTCAGCTTCGACAAATCGTTGAAACTT
CGGAGCGATGGCGTGTGGGGTATCAAGGATATCGTATGGGTCACTGGCCT
CGCGGATGAGCGAGGTCTCGAGCTTACGGATATGGCGGCGATGCCGGCCA
ATAATTTCTTCGTTACGTTTACCAAGGTGCGGGAAGTTGGCGCCGGTGAC
AATTCTGATTCTGTCCGAGCAGGTTCGGTTGGAGTGGCTGATCGTGTTTC
AGCGGTTGTTGCTCCTGCGAAGGCTGCTTTGTTGGAGAAGCTTGCTTCCA
ATTAGGTGCGGGAAGTTGGCGCCGGTGACAATTCTGATTCTGTCCGAGCA
GGTTCGGTTGGAGTGGCTGATCGTGTTTCAGCGGTTGTTGCTCCTGCGAA
GGCTGCTTTGTTGGAGAAGCTTGCTTCCAATTAG
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