mRNA_H-paniculata_contig2212.5856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2212.5856.1
Unique NamemRNA_H-paniculata_contig2212.5856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2212.5856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2212contigH-paniculata_contig2212:87..908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size822
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2212.5856.1prot_H-paniculata_contig2212.5856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2212 145..645 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.3749077-UTR-H-paniculata_contig2212:86..1441622929608.3749077-UTR-H-paniculata_contig2212:86..144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2212 87..144 +
1691480934.126277-UTR-H-paniculata_contig2212:86..1441691480934.126277-UTR-H-paniculata_contig2212:86..144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2212 87..144 +
1622929608.4026005-UTR-H-paniculata_contig2212:645..9081622929608.4026005-UTR-H-paniculata_contig2212:645..908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2212 646..908 +
1691480934.1489782-UTR-H-paniculata_contig2212:645..9081691480934.1489782-UTR-H-paniculata_contig2212:645..908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2212 646..908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929608.3903384-CDS-H-paniculata_contig2212:144..6451622929608.3903384-CDS-H-paniculata_contig2212:144..645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2212 145..645 +
1691480934.1352866-CDS-H-paniculata_contig2212:144..6451691480934.1352866-CDS-H-paniculata_contig2212:144..645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2212 145..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2212.5856.1

>prot_H-paniculata_contig2212.5856.1 ID=prot_H-paniculata_contig2212.5856.1|Name=mRNA_H-paniculata_contig2212.5856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MDVDLNRLSESLGMISIFMGGQGIDRVAHSSATWRVILANSHAAENYGPH
RSLAHTSRVDSIVLVNGNSCNPIIYIYIYICIVFVCMCMCLCKRRLAHVR
WVCWPTGNLPQRGIWSKTKRPFHEKMLPASSRGKIRARNDVNCTELQKEG
RRVAIELSSFYAIGGT*
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mRNA from alignment at H-paniculata_contig2212:87..908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2212.5856.1 ID=mRNA_H-paniculata_contig2212.5856.1|Name=mRNA_H-paniculata_contig2212.5856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=822bp|location=Sequence derived from alignment at H-paniculata_contig2212:87..908+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGACCCACTACGCTGGGGTGTAGGATGGCACATACGCTGTAAGGTAG
CCAGCGGAATGGACGTTGATTTGAATAGACTCAGCGAATCTTTGGGTATG
ATCTCAATTTTCATGGGGGGCCAGGGTATCGACCGTGTGGCCCACAGTTC
CGCCACTTGGAGAGTAATATTGGCCAACTCCCACGCTGCAGAAAACTACG
GGCCACATCGCAGTCTAGCTCACACGTCGCGTGTGGACAGTATCGTCCTT
GTTAATGGGAACTCGTGTAACCCCATAATATATATATATATATATATATG
TATAGTTTTTGTATGTATGTGTATGTGTCTGTGTAAACGACGGCTCGCAC
ATGTGAGGTGGGTATGTTGGCCAACCGGCAATCTTCCCCAAAGAGGAATT
TGGAGTAAAACAAAGCGACCCTTCCATGAGAAGATGCTGCCTGCATCCTC
CCGTGGGAAAATCCGCGCAAGAAACGACGTGAACTGTACGGAATTGCAAA
AAGAAGGCAGACGGGTAGCTATAGAGCTCTCCAGCTTTTATGCAATTGGT
GGCACATGACCTCTCGGCGATTTTGCATTCAGTTTTACTGGAAGAAACTT
GAAATAGAGTCAAGGGACACTGCCGGCCAGAATATCAGTTTTCGTTTCTG
ATCACAACAAAAGATCGTAGGTGGAAATACGTAAAATCGGGGAAGGGAAA
AAACGTGAGGGGCAGGCAGACAAGCAGGCTAGTTATGTCGAATGGAACTC
ACCGACAAGAAACCTGGCAAAATCGATAAAAGGAAGGAACAGCACCAGGG
CTTCCCACGTTGTTCGCCACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2212:87..908+

>mRNA_H-paniculata_contig2212.5856.1 ID=mRNA_H-paniculata_contig2212.5856.1|Name=mRNA_H-paniculata_contig2212.5856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig2212:87..908+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTTGATTTGAATAGACTCAGCGAATCTTTGGGTATGATCTCAAT
TTTCATGGGGGGCCAGGGTATCGACCGTGTGGCCCACAGTTCCGCCACTT
GGAGAGTAATATTGGCCAACTCCCACGCTGCAGAAAACTACGGGCCACAT
CGCAGTCTAGCTCACACGTCGCGTGTGGACAGTATCGTCCTTGTTAATGG
GAACTCGTGTAACCCCATAATATATATATATATATATATATGTATAGTTT
TTGTATGTATGTGTATGTGTCTGTGTAAACGACGGCTCGCACATGTGAGG
TGGGTATGTTGGCCAACCGGCAATCTTCCCCAAAGAGGAATTTGGAGTAA
AACAAAGCGACCCTTCCATGAGAAGATGCTGCCTGCATCCTCCCGTGGGA
AAATCCGCGCAAGAAACGACGTGAACTGTACGGAATTGCAAAAAGAAGGC
AGACGGGTAGCTATAGAGCTCTCCAGCTTTTATGCAATTGGTGGCACATG
AATGGACGTTGATTTGAATAGACTCAGCGAATCTTTGGGTATGATCTCAA
TTTTCATGGGGGGCCAGGGTATCGACCGTGTGGCCCACAGTTCCGCCACT
TGGAGAGTAATATTGGCCAACTCCCACGCTGCAGAAAACTACGGGCCACA
TCGCAGTCTAGCTCACACGTCGCGTGTGGACAGTATCGTCCTTGTTAATG
GGAACTCGTGTAACCCCATAATATATATATATATATATATATGTATAGTT
TTTGTATGTATGTGTATGTGTCTGTGTAAACGACGGCTCGCACATGTGAG
GTGGGTATGTTGGCCAACCGGCAATCTTCCCCAAAGAGGAATTTGGAGTA
AAACAAAGCGACCCTTCCATGAGAAGATGCTGCCTGCATCCTCCCGTGGG
AAAATCCGCGCAAGAAACGACGTGAACTGTACGGAATTGCAAAAAGAAGG
CAGACGGGTAGCTATAGAGCTCTCCAGCTTTTATGCAATTGGTGGCACAT
GA
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