mRNA_H-paniculata_contig22104.5851.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22104.5851.1
Unique NamemRNA_H-paniculata_contig22104.5851.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22104.5851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22104contigH-paniculata_contig22104:187..4267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1961
Cds size1191
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929607.5404408-UTR-H-paniculata_contig22104:186..2871622929607.5404408-UTR-H-paniculata_contig22104:186..287Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22104 187..287 -
1691480933.81257-UTR-H-paniculata_contig22104:186..2871691480933.81257-UTR-H-paniculata_contig22104:186..287Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22104 187..287 -
1622929607.551681-UTR-H-paniculata_contig22104:462..5801622929607.551681-UTR-H-paniculata_contig22104:462..580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22104 463..580 -
1691480933.8209023-UTR-H-paniculata_contig22104:462..5801691480933.8209023-UTR-H-paniculata_contig22104:462..580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22104 463..580 -
1622929607.5657995-UTR-H-paniculata_contig22104:600..8141622929607.5657995-UTR-H-paniculata_contig22104:600..814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22104 601..814 -
1691480933.8284407-UTR-H-paniculata_contig22104:600..8141691480933.8284407-UTR-H-paniculata_contig22104:600..814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22104 601..814 -
1622929607.5843863-UTR-H-paniculata_contig22104:835..8911622929607.5843863-UTR-H-paniculata_contig22104:835..891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22104 836..891 -
1691480933.8368928-UTR-H-paniculata_contig22104:835..8911691480933.8368928-UTR-H-paniculata_contig22104:835..891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22104 836..891 -
1622929607.637582-UTR-H-paniculata_contig22104:3986..42671622929607.637582-UTR-H-paniculata_contig22104:3986..4267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22104 3987..4267 -
1691480933.8657475-UTR-H-paniculata_contig22104:3986..42671691480933.8657475-UTR-H-paniculata_contig22104:3986..4267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22104 3987..4267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929607.6010432-CDS-H-paniculata_contig22104:891..9841622929607.6010432-CDS-H-paniculata_contig22104:891..984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22104 892..984 -
1691480933.8456132-CDS-H-paniculata_contig22104:891..9841691480933.8456132-CDS-H-paniculata_contig22104:891..984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22104 892..984 -
1622929607.6240501-CDS-H-paniculata_contig22104:2888..39861622929607.6240501-CDS-H-paniculata_contig22104:2888..3986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22104 2889..3986 -
1691480933.8554945-CDS-H-paniculata_contig22104:2888..39861691480933.8554945-CDS-H-paniculata_contig22104:2888..3986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22104 2889..3986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22104.5851.1prot_H-paniculata_contig22104.5851.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22104 892..3986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22104.5851.1

>prot_H-paniculata_contig22104.5851.1 ID=prot_H-paniculata_contig22104.5851.1|Name=mRNA_H-paniculata_contig22104.5851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=397bp
MSEDNKMEREAREDQERRKSVRDSTGGEWDGADAALREASASLGSDNPTA
PRFELPHRRPSRSEDLGSGTMGLSGRFDQIGSRPGAGAEAIRESASGDYA
PGVTNRFYGDRGVVFDFADKGGVADNVSQGRNDNHSGLAGYGETKDAFAT
GALSSLTKFDPKTIKFSGKAENWVMWRQTAMTYFALYGLEDALSTNVHIH
VFPMMPTETLRELRTTLAQVNAAKHAFLILLGAMHDQVSRQIVLKSGSPS
VAWIELERHYSPSTIGAGIALHDKFSSIKHKAGTDPGGTFIEIESLAPEM
EAKGCGVSETMLTVVLMSLMPREYGTVLDPIRYGGTASRGQIRTAVRGKY
LSLKESGKSGGGRALFLFPERMQDLLGRMSVLHFIFVQERPVWEGV*
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mRNA from alignment at H-paniculata_contig22104:187..4267-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22104.5851.1 ID=mRNA_H-paniculata_contig22104.5851.1|Name=mRNA_H-paniculata_contig22104.5851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4081bp|location=Sequence derived from alignment at H-paniculata_contig22104:187..4267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTCCCGTTTTTGGTATTGTGCGGTTTGCTCGAGTGCACGATTAATAAA
CATATTGTGCGTTGAAACACTCTGTCTTTTACAACCACGGCCGTGAAGGT
GTCGTGTGTACTACAGCTGCCGGCTTATCGATCACGCTAGCGATTAATTG
ATAGTACCGGTACAATGACAGGGGTGGAAGATGCAGAGATGGCATCTTTG
AAAGGATAGTTGGAAGAACAGGCACAACAAACGAAACGCTTGACGGAGTT
GATTAGTGCTCTGCAAGGTAGTGTTGCGGCTATGTCCGAAGACAACAAGA
TGGAACGAGAGGCCCGCGAAGACCAAGAAAGACGAAAATCGGTGAGGGAT
TCGACGGGTGGGGAGTGGGATGGTGCTGATGCTGCTTTGCGAGAAGCGAG
CGCGAGTCTGGGAAGTGACAATCCAACAGCACCACGTTTTGAGCTACCGC
ACAGAAGGCCCAGCAGATCTGAAGACTTGGGGAGTGGTACAATGGGGCTC
AGTGGGCGATTTGACCAAATAGGCAGTCGTCCAGGAGCGGGGGCAGAAGC
TATCCGCGAAAGCGCGTCAGGTGATTATGCCCCTGGTGTAACCAATAGGT
TTTATGGTGATCGTGGTGTGGTTTTTGATTTTGCAGACAAAGGTGGTGTG
GCTGATAATGTGTCGCAAGGAAGGAATGATAATCATAGCGGTTTAGCGGG
GTACGGAGAGACCAAAGACGCGTTTGCAACTGGTGCATTGTCAAGTCTCA
CAAAGTTCGACCCAAAGACCATCAAATTCTCAGGAAAAGCAGAGAATTGG
GTTATGTGGAGACAGACTGCAATGACCTATTTCGCCTTGTACGGCTTGGA
GGATGCGTTGAGCACTAACGTTCATATACATGTTTTCCCGATGATGCCTA
CTGAAACGCTTCGTGAGTTGAGGACTACTTTGGCACAGGTCAATGCGGCA
AAACATGCTTTTCTGATTTTGCTCGGTGCCATGCACGATCAAGTCAGCAG
GCAAATAGTCCTAAAATCGGGTTCACCGTCTGTTGCATGGATTGAGCTTG
AGAGACATTATTCTCCAAGTACAATTGGTGCGGGGATAGCTTTACATGAT
AAGTTTTCCAGCATTAAACACAAGGCTGGTACTGATCCTGGGGGGACATT
CATTGAGATAGAGTCGCTGGCTCCTGAGATGGAAGCAAAGGGGTGCGGAG
TTTCTGAAACAATGCTAACGGTTGTACTGATGTCACTCATGCCCCGCGAA
TATGGCACTGTACTCGACCCAATCCGCTATGGAGGAACCGCGTCTCGAGG
TCAAATCAGGACAGCAGTTCGCGGCAAGTACTTGTCCTTGAAAGAGAGTG
GAAAGAGCGGCGGCGGGCGTGCGCTGTTTACAAGCACGACCCGCGGGCAT
GGAGATGGACGAGGTGGTAGTAACGGTGGCCGTGGAAAACGCCTCGGTCG
CGGCGGAGCAACATCTTCCAGCTCTAATCCAACGGCTGCATCAACCACAC
AAGTACAGATAGAAATGCCAAATCTGGTGAAACGCGAACCTGTTATATCT
GTGAGCAGGTTGGCCATCTCGCGAGGACTTGCCCTAAAAGAAGGTGTGCG
AAGTGCAGATGCATAGGTCACCACCCGAAGGACTGCACAAGAACAACGAC
GGCAGTGCTAGCTGTGTCTGACGCAAGCAAGAACACCATCCACGGAGCCT
TCATGACTGCAGAATCAACAGGCGAGTAGACGATGGTTGGGGTACAGGAA
GGGCTAGACGAAGTACAAGCAGAGCAAGAAGGGGAAGAGGTCTGGATAGC
GGATTCGGGAGCAACAGTTCATACAACCCCTTCACGGGATAATATGTTCA
ACTATTGTAAAACTGACGGAACAACTTACTTGACTGTTGCGTCATGTGTA
CAGCTACCCATCGAGGGGTATGGAGAGCTGACGATAGTTTTTAAAACGCC
AGAATGCAATTACCAACTGCTTCTGGGGAAGGTTGCACACGTACCAGAAC
TAGATTACAATCTATCTTCTCTTCGGGTTGCGACTGATCTAAATTATCCA
TCAGTAATTGAACGATCGGGGGTACGCGTGGCCATGCATGGCGGAAAAGA
ATTAATATTTCCGCCTAACGGAAACATGAACACTTTGACCGGTACCCGCC
TCTCGCCGCTAACCAATTCATTGCAAAATGAGTTCTCAAATGCTGTGCTC
GCGCCCGGACTCATATCCCTAAACGGGCCTGCTGACATAAACCTGTTTCA
TCAATGTTACGGTCACCTGCACGAGGAATTACCACGGCAAACTGCAAAAG
ACTTGGGGTTCACGCTACAAGGGGTTCTGGAGGAGTGTCACAGGTGTTCA
CTGGCGAAAGGGCTGCGAAAGGTTATTCCACGGGAGACATCGACACGTGC
ACGGGAGGTTCCTCCTTCGTTGGGAGGGAGGAATTCTTCACTGAATGAGA
GCGGAGAGGGCAACTCCGACATCGGAGATGCTAAAGAAGAAACGGTCCGG
GCGTCGCCGCCCGTGACACATGCACACGTGCAGGCAGATGAAGAAGACAT
CGGCGACGGTCCCATCGAGAAGCAACCACCTTCTACACTGGCGGTCGAAC
CTCCGAGCCGGGAGGGCAGCGGTCACCTGTCCCCGACGGTGGATTCGGAG
CCGGGAGGGCGATGAATCGCCACCGCCCACGGTGGACTCCGAAGACGGTG
GGGAGGCGGACGAAAATTTCGACGGCTTCACGTACAGCATCAACAGCGAG
GCGGGGGAGCGCCCCCCTGCACCTGAACCGCCTGTGCTTGGCCGCACGCG
GCAACAGACTCGCTTGCAACAGGCAAACATGGAGGGTGACGTGGAGCTGG
ACAGCACCAGCGGCGAAGCAGGGGGTGACAACCCTGTGCCTGGGCCGCGT
GCGCTTGGCCGCACACGACAATAGACCAGCATCCAAGAGCAGAACGTTGT
TCAAGGGCTGATGGCGCTCACGGGGAACATGAAGTTTGCTTCATCAGTGG
CGTTGTGCATGGGTGCACAATCAGTGGCTAGTGATATTGAGCAAAACCAT
ATCAGTGATGTAGGAGATTGACCACGATTCATGCCGTAGATGTTGCTGAT
TTAGGGTACAGTAAGTTCTGATTTGTCCGTATTTCCCCTTACAGTGATCA
GATTGTGCGGCAAAAGCCTATTTGAAGTAAGGCTTATTTCTTGTAGCAGT
TGGAAATAGGATTGATTAGCAGATAAAACAATTTGGCAGGATGGAGCAAA
GTCGAAAGTGTTTCACTATTTCCCGTCGATTGTTTGTTTCCTGAACGAAT
GCAAGATTTGTTGGGAAGGATGTCTGTTTTACATTTTATCTTTGTCCAGG
AGCGACCGGTCTGGGAGGGCGTCTAGTTCCTTCAGAGCTGTGTTCTCAGT
AGTGCTTGCGTCGAATCATTTTCTGAGTCCATGTGTTTTGCGACATCTGG
GAGGTGTTGACAAATTTGGTAACTGACTCTACTTTCCCTTTGTTGAGCTT
GCTTGGAAAGTTCAGTTTTTCTCTGTTTTTCCTTTATTAGAGAGAAGAAG
GTTCGGTTCGAGTTCATGAAGTCGGATGATCAGCACGCAGACGTGATGAA
AGCTTTGCCAGAAAAGAGTTCTGTCTACCACAGAAACACTTTAATGAACA
TTAATTAGCCGACTTGAGTTTGTTTTGGGTTTTTGAGTTTGTTGTTGTGT
GGAGTTATATCCAGGAATGACTCAAAGGTTCCTGAAGTTCATGTTACTGA
TGAATAACCTTATGTTTTTGTCATGCACGTAAAGGCACGATGAGTAGCAA
CTCCGAGATTTAACAAGGAGGTGTTGGCTTTCTCTGGGTCACAGGGGCAA
CCGCTGGTTGCTCTGCGATAACGCCGGTTACGAGCTAAGGTTTTCGTTCA
TTGTTGATTGAGATTTCGCTTTTCTTACCAGGATTATTAACTGACGTAAA
TGGTCATCTACGCAAAGACAATACATGCAACGTATTGGGGAGGGAATTCT
TGAGGAGGAATTTTCGGTTTGGTAAGTAGGTGTGTTTACGGCGCTTGTGC
GCGGCTGAAATGGCTTTTTTCCTGGCAGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig22104:187..4267-

>mRNA_H-paniculata_contig22104.5851.1 ID=mRNA_H-paniculata_contig22104.5851.1|Name=mRNA_H-paniculata_contig22104.5851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2382bp|location=Sequence derived from alignment at H-paniculata_contig22104:187..4267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGAAGACAACAAGATGGAACGAGAGGCCCGCGAAGACCAAGAAAG
ACGAAAATCGGTGAGGGATTCGACGGGTGGGGAGTGGGATGGTGCTGATG
CTGCTTTGCGAGAAGCGAGCGCGAGTCTGGGAAGTGACAATCCAACAGCA
CCACGTTTTGAGCTACCGCACAGAAGGCCCAGCAGATCTGAAGACTTGGG
GAGTGGTACAATGGGGCTCAGTGGGCGATTTGACCAAATAGGCAGTCGTC
CAGGAGCGGGGGCAGAAGCTATCCGCGAAAGCGCGTCAGGTGATTATGCC
CCTGGTGTAACCAATAGGTTTTATGGTGATCGTGGTGTGGTTTTTGATTT
TGCAGACAAAGGTGGTGTGGCTGATAATGTGTCGCAAGGAAGGAATGATA
ATCATAGCGGTTTAGCGGGGTACGGAGAGACCAAAGACGCGTTTGCAACT
GGTGCATTGTCAAGTCTCACAAAGTTCGACCCAAAGACCATCAAATTCTC
AGGAAAAGCAGAGAATTGGGTTATGTGGAGACAGACTGCAATGACCTATT
TCGCCTTGTACGGCTTGGAGGATGCGTTGAGCACTAACGTTCATATACAT
GTTTTCCCGATGATGCCTACTGAAACGCTTCGTGAGTTGAGGACTACTTT
GGCACAGGTCAATGCGGCAAAACATGCTTTTCTGATTTTGCTCGGTGCCA
TGCACGATCAAGTCAGCAGGCAAATAGTCCTAAAATCGGGTTCACCGTCT
GTTGCATGGATTGAGCTTGAGAGACATTATTCTCCAAGTACAATTGGTGC
GGGGATAGCTTTACATGATAAGTTTTCCAGCATTAAACACAAGGCTGGTA
CTGATCCTGGGGGGACATTCATTGAGATAGAGTCGCTGGCTCCTGAGATG
GAAGCAAAGGGGTGCGGAGTTTCTGAAACAATGCTAACGGTTGTACTGAT
GTCACTCATGCCCCGCGAATATGGCACTGTACTCGACCCAATCCGCTATG
GAGGAACCGCGTCTCGAGGTCAAATCAGGACAGCAGTTCGCGGCAAGTAC
TTGTCCTTGAAAGAGAGTGGAAAGAGCGGCGGCGGGCGTGCGCTGTTTAT
GTCCGAAGACAACAAGATGGAACGAGAGGCCCGCGAAGACCAAGAAAGAC
GAAAATCGGTGAGGGATTCGACGGGTGGGGAGTGGGATGGTGCTGATGCT
GCTTTGCGAGAAGCGAGCGCGAGTCTGGGAAGTGACAATCCAACAGCACC
ACGTTTTGAGCTACCGCACAGAAGGCCCAGCAGATCTGAAGACTTGGGGA
GTGGTACAATGGGGCTCAGTGGGCGATTTGACCAAATAGGCAGTCGTCCA
GGAGCGGGGGCAGAAGCTATCCGCGAAAGCGCGTCAGGTGATTATGCCCC
TGGTGTAACCAATAGGTTTTATGGTGATCGTGGTGTGGTTTTTGATTTTG
CAGACAAAGGTGGTGTGGCTGATAATGTGTCGCAAGGAAGGAATGATAAT
CATAGCGGTTTAGCGGGGTACGGAGAGACCAAAGACGCGTTTGCAACTGG
TGCATTGTCAAGTCTCACAAAGTTCGACCCAAAGACCATCAAATTCTCAG
GAAAAGCAGAGAATTGGGTTATGTGGAGACAGACTGCAATGACCTATTTC
GCCTTGTACGGCTTGGAGGATGCGTTGAGCACTAACGTTCATATACATGT
TTTCCCGATGATGCCTACTGAAACGCTTCGTGAGTTGAGGACTACTTTGG
CACAGGTCAATGCGGCAAAACATGCTTTTCTGATTTTGCTCGGTGCCATG
CACGATCAAGTCAGCAGGCAAATAGTCCTAAAATCGGGTTCACCGTCTGT
TGCATGGATTGAGCTTGAGAGACATTATTCTCCAAGTACAATTGGTGCGG
GGATAGCTTTACATGATAAGTTTTCCAGCATTAAACACAAGGCTGGTACT
GATCCTGGGGGGACATTCATTGAGATAGAGTCGCTGGCTCCTGAGATGGA
AGCAAAGGGGTGCGGAGTTTCTGAAACAATGCTAACGGTTGTACTGATGT
CACTCATGCCCCGCGAATATGGCACTGTACTCGACCCAATCCGCTATGGA
GGAACCGCGTCTCGAGGTCAAATCAGGACAGCAGTTCGCGGCAAGTACTT
GTCCTTGAAAGAGAGTGGAAAGAGCGGCGGCGGGCGTGCGCTGTTTTTGT
TTCCTGAACGAATGCAAGATTTGTTGGGAAGGATGTCTGTTTTACATTTT
ATCTTTGTCCAGGAGCGACCGGTCTGGGAGGGCGTCTAGTTGTTTCCTGA
ACGAATGCAAGATTTGTTGGGAAGGATGTCTGTTTTACATTTTATCTTTG
TCCAGGAGCGACCGGTCTGGGAGGGCGTCTAG
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