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Homology
BLAST of mRNA_H-paniculata_contig221.5848.1 vs. uniprot
Match: A0A6H5JQ60_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ60_9PHAE) HSP 1 Score: 117 bits (294), Expect = 3.990e-25 Identity = 71/227 (31.28%), Postives = 116/227 (51.10%), Query Frame = 2
Query: 20 DLPRMGIINPENKSQIWELLLNFARGYPILGYNQGQGQACISISNAVGHNADATMAVFSKWAVPAFSLVMSTEGGDRCDRVKAIEYVWTCLGTSAPAVRAWLLNARYNAHLDLADNDIEDLAYILYSHIFSRAINSMCSMVGFNASIQAAIIDGTMQAGVHGPAVSMWAMSVVLCLMEKKAQHDETLLTWSIKNVKPFCQTINSFDVLEEAAPISLAEFVNGYRKAL 700
D R+G+ + + + E+ A +P++GYNQG +C +I VG N AVF+KWAVP ++M+ + A+ Y W+ + A V WL D D E +A + +HIF +++ CS +G + I++ TM+AGVHGPAV+++ + +LCL EK+ D ++ + ++ SF + E AP+SL F+ GYR A+
Sbjct: 213 DRSRLGVSDAV-AAAVKEICTKLAAVFPVIGYNQGFDASCKAIFICVGGNLGVAAAVFTKWAVPLAWMMMNPYRHGQLGINTAMRYTWSVIKMHAAPVSGWLCRDPIVG----CDEDNE-MADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAM 433
BLAST of mRNA_H-paniculata_contig221.5848.1 vs. uniprot
Match: A0A6H5K5C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C0_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.810e-23 Identity = 70/227 (30.84%), Postives = 115/227 (50.66%), Query Frame = 2
Query: 20 DLPRMGIINPENKSQIWELLLNFARGYPILGYNQGQGQACISISNAVGHNADATMAVFSKWAVPAFSLVMSTEGGDRCDRVKAIEYVWTCLGTSAPAVRAWLLNARYNAHLDLADNDIEDLAYILYSHIFSRAINSMCSMVGFNASIQAAIIDGTMQAGVHGPAVSMWAMSVVLCLMEKKAQHDETLLTWSIKNVKPFCQTINSFDVLEEAAPISLAEFVNGYRKAL 700
D R+G+ + + + E+ A +P++GYNQG +C +I VG N AVF+KWAVP ++M+ + A+ Y W+ + A V WL D D E +A + +HIF +++ CS +G + I++ TM+AGVHGPAV+++ + +LCL EK+ D ++ + ++ SF + E AP+SL F+ G R A+
Sbjct: 218 DRSRLGVSDAV-AAAVKEICTKLAAVFPVIGYNQGFDASCKAIFICVGGNLGVAAAVFTKWAVPLAWMMMNPYRHGQLGINTAMRYTWSVIKMHAAPVSGWLCRDPIVG----CDEDNE-MADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGCRAAM 438
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1434 |
| Cds size | 717 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig221.5848.1 >prot_H-paniculata_contig221.5848.1 ID=prot_H-paniculata_contig221.5848.1|Name=mRNA_H-paniculata_contig221.5848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
MITRDLPRMGIINPENKSQIWELLLNFARGYPILGYNQGQGQACISISNA VGHNADATMAVFSKWAVPAFSLVMSTEGGDRCDRVKAIEYVWTCLGTSAP AVRAWLLNARYNAHLDLADNDIEDLAYILYSHIFSRAINSMCSMVGFNAS IQAAIIDGTMQAGVHGPAVSMWAMSVVLCLMEKKAQHDETLLTWSIKNVK PFCQTINSFDVLEEAAPISLAEFVNGYRKALAQSGREL* back to topmRNA from alignment at H-paniculata_contig221:5430..11726- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig221.5848.1 ID=mRNA_H-paniculata_contig221.5848.1|Name=mRNA_H-paniculata_contig221.5848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6297bp|location=Sequence derived from alignment at H-paniculata_contig221:5430..11726- (Halopteris paniculata Hal_grac_a_UBK monoicous) CGAGGCCATGATCACCAGAGATCTGCCTAGGATGGGGATCATCAACCCCG
AGAACAAGTCGCAGATCTGGGAGCTACTCCTGAACTTCGCGAGAGGGTAC
CCCATCCTTGGCTATAACCAGGTAATGGAACTTGTGTTTTTGTTTCCTTG
CTTCGCTTTATCATTTCGGTGATGCACTGCACAGGAGTGTACCTGCGTAC
TGTCGAGGCGAAATTTCTACCGCAGTTAGAGTTATACAGACAGCTAACTA
GCTGTGTACGTTGTCGTGCGTGGTAACTTGACTGTTTTGCTACAGTGGTG
GACCCGATTTTAAGGCGATATAGTAACAAGCCAAATAGATCCGCCTGCAA
TCAGTCCCCGCCTTTTATGTGTTTAAGGCGGACATTCTCCTAAAGCGGAG
ATTTGGTATAAGAAAGATTTTTGCTTTTAATTGGATCACATTAAGCAAAT
TTTGTGAGGAGAAGGAAACGCAGTACAAGTTGAAGATCATGATTGTGAGG
TTTCACAAGAAGGCATGCGAACATTTTTATTTTTTTTTAACCCCCGGAAG
GTCAGGCAAAAAACCCTTTCCGCTGCAACCCTTTCCGCCGGCATGCGAAC
ATTGTATATACAGCAGACGTCTGATGATAGCGCGGAAATACTTGCTTTGC
ACGCGCACTGGACCGCACCGTGTTCTTTCTCTGTTCAATTCTATATGCCG
GCTAACCAGTCCACAGCAACGCATTGTAACGGACAGGATGCACACCTGCA
GTAAACACGCCAGCGGCCACAGGTACCGAGATAACGAACAAATTGGCACT
GCAATACCGAGCAGGTCACATCGCTGTGTCAACACGCCATGACCGCAATT
TTGTTCCTATCTCCATATTCCTTCCCGACCAGACTTACTGTATGCATTCT
AGCCGAAGGATGTTTTGCTCTTTTTCTCGAATTCAACCGCTACACACATT
AAAAGAGTAGAACGTCTCATGACGATGTCATAAAGTGGCGAATATCAGCC
TAGCGAACCTTCCTGCTCGCGAAGTCCCTCTTCAGGCAATTTTCGACTTT
CGAAGGCAAAAGGAAACGTCTTGTATAAAAAATTCGGCGCTCATTGCCTC
AAGACAAGCAAAACTATCTGCTACGTCCGAGAATGGAGGACGAGGGGAAG
GAAGAACGGCCGACCAACCCGTAAATGCCGACTCATTTTCGGCATCATCT
CCGAAGTCGTGGCTTTCCATTTGCTCAATCGCTTCCTCCATCACCTCGTC
ATCCTTCAGCATTCCCAATGCCTCTCCCTTTTCCTCCAGACAGTCTTTTG
CGCATGTTAGCCGCGCGAGCCTTAGGCTTGGGCACAGCGTGCTTAATCTT
CACGTGCTTTCCGCTACCGCTGGAACGTTCGCCACGCGAGCCGACGACGG
GCGGGCTGGTGATCAACGTCGTCTGTACGTTAGACCCGGTGGGCAAGGTC
GGCGCGTTGCTGCTCTCCAAACACTGTTCACACACGCGCTTCACTTTCAC
TCTGATGCAGCGGATCTTGCATACCGCACATGCCATGGAGGTATCCACCG
CACTTGCGACATTTGTGGCAGGTGTAGTTGGGAGGGCTGCGTGTGTCATG
CTTGAGCCTGCAACGCTCACCTGCTGAGTAGGACATGGCTGCAGACACGT
TGTGCTATGCCTTCTGTCTGGTTTACGCTGTACTGCACCGTTTGTACTGT
GGTTGGGACTCGAAACGTGTGTCTGCACATTTTGCCGCAGGTCTTATTTA
AAGGGGGAATGGGTGACACAGTAGGTCTTCCGCTTTGATAAAAAAAAAGT
AGTGACAAGCCGATTGAACCCGCATTAAATCAGTTTTTGCCTTATATTGT
GGTGTGCCTTAAATCGGGTCCATCACTGTCTTACCCAGATACACCAAGTG
TACTTTATGCCATAGCGGAAAGGCGTAAAACTCTACTGGTTAATCTTGGC
GTTTGTCGTTCGTAGTACATGATATTCCAATTATTTCGGTTATGATCGAA
TTTCGAAGGAGTTTCCGGGCGGGACCGTCCTTCATAACGAGTGGTCCATA
AGAAAATAAGAGCACAAGTTTGGACTGTTTGAAAAATATTTCCTTTGGAT
AAGATTTTACTAATTTTATGATTGAAAAAAATTGCGAAAGAACCCCTTTC
GATGTATTGGAAACTAAAAACATATTTCCTCTGATTCACAGGTATACTCA
GCTATGATTATAGAGGCACTTAAGCATCTCTGATTTTTTTTTCATGGAAA
TTCTGCATGTTTTTTTGTTTGAAACCCTCAAAATGGAGTCAAACAGTTGA
TTTTTAACACCAAAACACGCGCCGTGAAAAAAAGTACTTGGCCGAAAAAA
GGCCCTTTTTTGGTACTTTCCCCTGTTGAACTCGAATAAGAACGTGCACT
TTTTGGGCGTTTTTCGTCGAAGTGTTTTTTTTCACGGGGTGTGTTTTTGG
TGCTAATGGTCAACTATATGACTCAATACTGTGGGGTTCAACCGCAAAAA
TGTGTAGGATTCTAATTAAAAAATTAGATGAGAGATATTTCAAGTGCGTC
TCTAGTCACGACATACTGTACTTGTAGGACAATATCAAAGGTCCCGAAAA
AGGGCCTTTTTCGACCAAATATTTTTTTCATGGCGCGTGTTTTGATCTTA
ACAGTCAACTGTTTGACCCCCCAAAATGGGTTTCAACTAAACAACAGGAA
GAGTTCCTTTTAAAAAACTGGAGACATTTAAGTGCCTCTATGATCATAAC
TGAGTATACGTATGAGACAGAGAAAATATATCTCCCTCCACCACAGGATG
GACGTCATGCTACAAATATACCGAACTCAGGTAAGGCATCACCAATCAGT
TGTATATGTATCGAACAGGATTAACTAGGTAATGCTCAGAATACCTGCAA
TGTAGTTGAATAATAGTTGAAGTATAATCTGTTCGTGAGTCTCTCTTGAG
TTTTGTTTTCTGTCCGTGCTTCTTGGTTCATTTTGTGCTGGAAGTACAGA
TTTTAGCAAGATTTTTGCTTGCAGTCTTTTCAGCGAAACCATTTGTATCT
CGAACCTAATCTACTATTTAGCAAGGACGAATGAACTCGTTATCATTTCA
AAGATTCATCAAAGAATCAGTTGCCTTCACAAACGGAAAATATTTCCCCC
CACCGAAACAACGATTTCAAACAATAATTTCGACTGTAGTGTAGGACCCA
ACCATGTGTGGATGTAGAGCTCCATGTATTCGTTGATAAATCTCGACAAG
TAGAATTCCCCTGGGCGGTCTCTGAGTTCTGTTTCAGCTGGCTCTCTCAA
ACTTTGTCCCCAGGTCTCTCGCTTTAGAGTTTTAATAGTTTGGTGTTTCT
TGGATTTGCTTTGGTGTTTGGGTTGGAGATTTTTCCACGAAAAAACCCCA
AGCCCGTGATACAACGCTCAAGTAGATAGCGCGCAAAATTTGAAATCTAA
CACCATCGCTTGTTTGCGACCAACCTCTTTTTTGTCCACCGTCTGTCCAC
TGATGTACTGCCATCTCTGTTTCCCTCTCTTTCTCTCTCTCTCTCTTTCT
CTCTCTCTCTATATATATATATACTTTGTTCAGGGTCAAGGCCAAGCCTG
CATCTCTATCAGTAACGCCGTCGGACACAACGCAGACGCGACGATGGCGG
TATTCTCCAAGTGGGCCGTCCCCGCTTTCAGCCTTGTCATGAGCACCGAG
GGGGGTGACCGTTGTGATCGCGTCAAGGCAAGGACTACTACTCCGCGTTC
GTTCATACTTCGACCTGAAAAAGACGCCGTAAACCACTCAGCGTAGCTCC
CCGTTAGGATGAGGTCGACAGCAAAAGAGACAAAAAGCTATCAAAGCTCG
ACGAAAGTACCACTGTTCAGGTTTCCAAGATGGCTTGTCCGGCGCTTCGG
AGACGCCCTTTGTGTATGTTTGTATGTGCGTATATTTCTCTTGTTACAGG
GGCTGTTCGACCGCATCAAAAATCCTCGTATGACTTGTCGATGATCTGGT
TTGTTGTTTTTGCCTCCCGTGCCGTGTATGTATTCTGGGGTGTTCAGGCG
ATAGAATACGTCTGGACCTGCCTCGGAACGAGCGCGCCTGCTGTCCGCGC
GTGGTTGTTGAATGCACGATACAACGCCCACCTCGACCTTGCTGACAATG
ATATCGAGGATCTGGCTTACATCCTTTACTCTCACATATTCAGCCGGTGA
GTGGATTCGACGTTGATCATGCCTTTGGCGTGTATTCACCATGAATGTCA
GCACAGCGTCCATGGAATGGGAGGTTGAGTAAAAGGTCAAGTGCTCGCGT
GTGCATGTGGTTGTCACCGTGCTACATGCTCAGTGAGTTAGAATGAACGC
CATGACAGCGTAGTGATTTGGGTCGTGGTTGCTGGTTCGCGCTTATGGTC
CACAAGGGTGTGGTTTTTTCCTGTTGTTACCACCAATTGAATAGTGTTGA
TGCCAGGATTACTGACACAACGGCATCAAAAATTATCACTCACGGCATGT
TTCTTTAGCGTGGTACACAACACATATCATCCTACTCCATCCCCTCCCCC
GCCGTTCGAACCACACCCCCTGCGCGTGCTTAGAGCAATCAACTCTATGT
GCTCGATGGTGGGGTTCAACGCATCCATCCAAGCTGCTATTATCGACGGC
ACCATGCAAGCGGGGGTGCATGGGCCCGCTGTGTCGATGTGGGCCATGTC
CGTAGTACTGTGTCTCATGGAGAAGAAGGCACAACATGACGAAACGCTGC
TCACAGTAAGTGGTTGCGTTTGCTGGGTATAGTGTATGATGATGTTGTTG
GTTATTTTTATGGAGGTGGTTGGGTGGTTGTTTTTTATATTCTCGCTGGC
TCTGTGATAAAACAGTGATGTCTACCGGTAGCAGCAGCACTCGACTTTTT
CTGTGTACCTTTTATTGAATGGGTCTTGGTGGGTTGGGGTATTCTCTGTT
GTAGCTTTCAACGTTTCTTATATAGAAAAGTTTCATTTTGCCGTTGTGTA
TCACGCAATGCCGACGAACAAGTTTGTTGTTTAGAATGTTGGGAACAGGC
TTTTTGTGTGGAAGATTGGGAAATGTCATGTAGATGATCCCCTTCTTACC
AAGGCGTACGTTTGGACGTTTGTTAAGCCAGCGGCAGGCAATATCAGATC
CATAAGAAAGCACCCATCAACTCGCTTGCATAGACCATTGATTTCTCTAG
ATTTCGTTTCGCATGGCTTGGATATTGGTGATGAATGTTGGTGTTGCGTA
ATATTGTTCATGGTTTAGATCGAGACTCTCAATTCGATGATGTGGATATT
TTCGTACACCACAAAGCCATAGTTCCCCAAAATACACGCCATCGTGCCCA
GCAGCAATACCTTCCTTCTCCATTCTCTTGCCTCTCGTTACCTCAATTAA
TGTACATACATGTATCGTGAACTGCTGCCACATCGCGGCCCATTACAAGT
GGTCCATCAAGAATGTCAAGCCCTTCTGCCAGACCATCAATTCCTTCGAC
GTCCTGGAGGAGGCCGCGCCTATTTCTCTGGCCGAGTTCGTCAACGGGTA
CCGCAAGGCGCTTGCCCAAAGCGGAAGAGAGTTGTAATGAAGGAACATCC
ACCTCTCCTCTCTCTCCTTCTCTCGGTTGCCGTTGTTTTAGACATTTAAG
CCGATGCTTCAGTGTGTGGTTAGTGCACTTGACATGCTCGTGCAAAGGTT
AATGTCTATGCCTGTCTGTTATCGCTTTGGAGATATGAGTGGTAGGCTGA
CGTCCAGCTCTCAGAGTTACTAGGACCATTTCACAACAACCGTAGCCCTG
GTGACCCGAACAAGCAAAAATTGTCTTCAGCTAACTGTTGTTCTGTTGTC
TATACCAGCGGGAAATATACACCTAGTAGTGTAGTGCTTGAGCCCTAGGC
GTCTATGTCTTGCAGCGTTGGTGGCGTCGGTGACCAGACCATCAAAATTC
GATTTGTTTAGCCAATGATGGCACCGCTGCGCGGGTCAAGATCCGATTGC
TCGACATCTTGGCCTGGGCCATCTTTGGATTAGTGTTAGCGTTAGTGTTA
GGGCTTGGCATCGGGCCAGGCCGTCCAATTTTATTGCTATTTTGTTCATA
TTAGCGGGAAATAGTTGTACAGAGACATACGGATCACGTGTACTTTTGAC
GTTGTGCTGCTGTACATGGTAGTATCGGTTGCCTCCCACGCGGAGAGCAG
GTTCTGGGGGAGGAGAACATGTAATGTGATGTACTTCTGTAGGTACAGTA
TTTGTGAGTAATTGTCGAAACTAAGATCTATCGTTGGTTTAATGCGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig221:5430..11726- >mRNA_H-paniculata_contig221.5848.1 ID=mRNA_H-paniculata_contig221.5848.1|Name=mRNA_H-paniculata_contig221.5848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig221:5430..11726- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGATCACCAGAGATCTGCCTAGGATGGGGATCATCAACCCCGAGAACAA GTCGCAGATCTGGGAGCTACTCCTGAACTTCGCGAGAGGGTACCCCATCC TTGGCTATAACCAGATGATCACCAGAGATCTGCCTAGGATGGGGATCATC AACCCCGAGAACAAGTCGCAGATCTGGGAGCTACTCCTGAACTTCGCGAG AGGGTACCCCATCCTTGGCTATAACCAGGGTCAAGGCCAAGCCTGCATCT CTATCAGTAACGCCGTCGGACACAACGCAGACGCGACGATGGCGGTATTC TCCAAGTGGGCCGTCCCCGCTTTCAGCCTTGTCATGAGCACCGAGGGGGG TGACCGTTGTGATCGCGTCAAGGGTCAAGGCCAAGCCTGCATCTCTATCA GTAACGCCGTCGGACACAACGCAGACGCGACGATGGCGGTATTCTCCAAG TGGGCCGTCCCCGCTTTCAGCCTTGTCATGAGCACCGAGGGGGGTGACCG TTGTGATCGCGTCAAGGCGATAGAATACGTCTGGACCTGCCTCGGAACGA GCGCGCCTGCTGTCCGCGCGTGGTTGTTGAATGCACGATACAACGCCCAC CTCGACCTTGCTGACAATGATATCGAGGATCTGGCTTACATCCTTTACTC TCACATATTCAGCCGGCGATAGAATACGTCTGGACCTGCCTCGGAACGAG CGCGCCTGCTGTCCGCGCGTGGTTGTTGAATGCACGATACAACGCCCACC TCGACCTTGCTGACAATGATATCGAGGATCTGGCTTACATCCTTTACTCT CACATATTCAGCCGAGCAATCAACTCTATGTGCTCGATGGTGGGGTTCAA CGCATCCATCCAAGCTGCTATTATCGACGGCACCATGCAAGCGGGGGTGC ATGGGCCCGCTGTGTCGATGTGGGCCATGTCCGTAGTACTGTGTCTCATG GAGAAGAAGGCACAACATGACGAAACGCTGCTCACAAGCAATCAACTCTA TGTGCTCGATGGTGGGGTTCAACGCATCCATCCAAGCTGCTATTATCGAC GGCACCATGCAAGCGGGGGTGCATGGGCCCGCTGTGTCGATGTGGGCCAT GTCCGTAGTACTGTGTCTCATGGAGAAGAAGGCACAACATGACGAAACGC TGCTCACATGGTCCATCAAGAATGTCAAGCCCTTCTGCCAGACCATCAAT TCCTTCGACGTCCTGGAGGAGGCCGCGCCTATTTCTCTGGCCGAGTTCGT CAACGGGTACCGCAAGGCGCTTGCCCAAAGCGGAAGAGAGTTGTAATGGT CCATCAAGAATGTCAAGCCCTTCTGCCAGACCATCAATTCCTTCGACGTC CTGGAGGAGGCCGCGCCTATTTCTCTGGCCGAGTTCGTCAACGGGTACCG CAAGGCGCTTGCCCAAAGCGGAAGAGAGTTGTAA back to top
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