prot_H-paniculata_contig22089.5844.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22089.5844.1
Unique Nameprot_H-paniculata_contig22089.5844.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length92
Homology
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A6A7FPR6_9CRUS (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR6_9CRUS)

HSP 1 Score: 83.2 bits (204), Expect = 8.060e-18
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0
Query:    1 MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKV-DEFTPNISQRFRMKDL 83
            + KSLYGLKQSGRNWNN L +FLV IG ++S  D CLY    D  +  ++  +YVDD+++A     V D+   ++  RF+MKDL
Sbjct:  115 LNKSLYGLKQSGRNWNNVLHDFLVNIGFEQSFADQCLYTRYKDNIKIILI--IYVDDIILAASNNAVLDDVKISLCNRFKMKDL 196          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 86.3 bits (212), Expect = 1.030e-17
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 0
Query:    1 MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 83
            ++KSLYGLKQSGRNWN  LDE+L+  G  R+  D C+Y  +  GE+  I+  ++VDDL+IA    +K+ +F  N+  +FRMKDL
Sbjct:  316 LKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY-QKQTGEDIIIV-VIWVDDLIIASSNTDKISQFKENMKSKFRMKDL 397          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 85.9 bits (211), Expect = 1.250e-17
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 0
Query:    1 MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 83
            ++KSLYGLKQSGRNWN  LDE+L+  G  R+  D C+Y  +  GE+  I+  ++VDDL+IA    +K+ +F  N+  +FRMKDL
Sbjct:  291 LKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY-QKQTGEDIIIV-VIWVDDLIIASSNTDKIRQFKENMKSKFRMKDL 372          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A7D9J8D6_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J8D6_PARCT)

HSP 1 Score: 84.0 bits (206), Expect = 1.680e-17
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 0
Query:    1 MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 83
            ++KSLYGLKQSGRNWN  LD +L+  G  R+  D C+Y  +  G+   ++  ++VDDL+IA    +K+ +F  N+  +FRMKDL
Sbjct:  169 LKKSLYGLKQSGRNWNRVLDGYLISDGFVRNPVDHCVYQKQTGGD--IVIVVIWVDDLIIASNNTDKISQFKENMKSKFRMKDL 250          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A6A7FPR7_9CRUS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR7_9CRUS)

HSP 1 Score: 82.8 bits (203), Expect = 3.660e-17
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0
Query:    1 MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKV-DEFTPNISQRFRMKDL 83
            + KSLYGLKQSGRNWNN L +FLV IG ++S  D CLY    D  +  ++  +YVDD+++A     V D+   ++  RF+MKDL
Sbjct:  130 LNKSLYGLKQSGRNWNNLLHDFLVNIGFEQSFADQCLYTRYKDNIKIILI--IYVDDIILAASNNAVLDDVKISLCNRFKMKDL 211          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A087T1Z9_STEMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1Z9_STEMI)

HSP 1 Score: 84.7 bits (208), Expect = 3.680e-17
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 0
Query:    1 MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKVDEFTPNISQRFRMKDL 83
            ++KS+YGL+QSGR WN  L++FL+  GL+RS+   C+YF     E+  I+G +YVDDL+I G   +++EF  +I +RF +KDL
Sbjct:  825 LKKSIYGLRQSGRAWNTCLNDFLIQYGLKRSSAKPCIYFCH---EKNIIIG-IYVDDLLIVGNMAEINEFKGSIKKRFSVKDL 903          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A2G8LML6_STIJA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LML6_STIJA)

HSP 1 Score: 79.7 bits (195), Expect = 1.240e-16
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 0
Query:    1 MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKV-DEFTPNISQRFRMKDLALSHACW 90
            ++KSLYGLKQSGRNWN  L E L   G QR+  D CLY      ++ Y+L  V+VDDLVIA   E +  EF   +  +F+MKDL      W
Sbjct:   94 LQKSLYGLKQSGRNWNQLLHEHLTSEGFQRNPADHCLYHRGVGDQDIYVL--VWVDDLVIAASNETLMSEFKDCMKIKFKMKDLLEISYFW 182          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A4Q2D651_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D651_9AGAR)

HSP 1 Score: 83.2 bits (204), Expect = 1.290e-16
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = 0
Query:    1 MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGR-REKVDEFTPNISQRFRMKDL 83
            +++SLYGLKQSGR WN TLD+ L+ +GL R   ++CLY  ++DGE  +++  VYVDDL++A   R  +++    +S RF+MKDL
Sbjct: 1139 LKRSLYGLKQSGRTWNKTLDQSLLSMGLVRLDAETCLYVYKEDGEVCFLV--VYVDDLLLAATSRPFMNKVKAMLSSRFKMKDL 1220          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A6A3BFR2_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BFR2_HIBSY)

HSP 1 Score: 82.8 bits (203), Expect = 1.730e-16
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 0
Query:    1 MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGE-ETYILGTVYVDDLVIAGR-REKVDEFTPNISQRFRMKDLALS 86
            ++KSLYGLKQS R W    DEF++ IG  RS+ DSC+Y  + DGE  TY+L  +YVDD+++A + +E+V E    ++  F  KDL L+
Sbjct:  588 LKKSLYGLKQSPRQWYKRFDEFMLRIGFARSSYDSCVYMKKQDGEISTYLL--LYVDDILVASKSKEEVQEIKDMLNSEFDRKDLGLA 673          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.400e-16
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 0
Query:    1 MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGR-REKVDEFTPNISQRFRMKDL 83
            +RKSLYGLKQSGRNW+  +D +  G G   S+ D CLY       E  ++  +YVDDL+IAG  R+ VD+F   IS+   MKDL
Sbjct:  121 LRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVI-VLYVDDLIIAGNSRDMVDDFKQAISKEISMKDL 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7FPR6_9CRUS8.060e-1847.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HLY2_PARCT1.030e-1748.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HG25_PARCT1.250e-1748.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9J8D6_PARCT1.680e-1745.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A7FPR7_9CRUS3.660e-1747.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A087T1Z9_STEMI3.680e-1746.99Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8LML6_STIJA1.240e-1647.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Q2D651_9AGAR1.290e-1647.62Integrase catalytic domain-containing protein (Fra... [more]
A0A6A3BFR2_HIBSY1.730e-1646.59Integrase catalytic domain-containing protein n=1 ... [more]
W7TII5_9STRA2.400e-1648.81Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..84
e-value: 9.1E-18
score: 64.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22089contigH-paniculata_contig22089:3110..3385 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22089.5844.1mRNA_H-paniculata_contig22089.5844.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22089 3101..3385 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22089.5844.1 ID=prot_H-paniculata_contig22089.5844.1|Name=mRNA_H-paniculata_contig22089.5844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYIL
GTVYVDDLVIAGRREKVDEFTPNISQRFRMKDLALSHACWK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2