mRNA_H-paniculata_contig22089.5844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT) HSP 1 Score: 90.1 bits (222), Expect = 5.120e-19 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 258
V+R++KSLYGLKQSGRNWN LDE+L+ G R+ D C+Y + GE+ I+ ++VDDL+IA +K+ +F N+ +FRMKDL
Sbjct: 313 VYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY-QKQTGEDIIIV-VIWVDDLIIASSNTDKISQFKENMKSKFRMKDL 397
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT) HSP 1 Score: 89.7 bits (221), Expect = 5.940e-19 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 258
V+R++KSLYGLKQSGRNWN LDE+L+ G R+ D C+Y + GE+ I+ ++VDDL+IA +K+ +F N+ +FRMKDL
Sbjct: 288 VYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY-QKQTGEDIIIV-VIWVDDLIIASSNTDKIRQFKENMKSKFRMKDL 372
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A7D9J8D6_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J8D6_PARCT) HSP 1 Score: 87.8 bits (216), Expect = 6.580e-19 Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 258
V+R++KSLYGLKQSGRNWN LD +L+ G R+ D C+Y + G+ ++ ++VDDL+IA +K+ +F N+ +FRMKDL
Sbjct: 166 VYRLKKSLYGLKQSGRNWNRVLDGYLISDGFVRNPVDHCVYQKQTGGD--IVIVVIWVDDLIIASNNTDKISQFKENMKSKFRMKDL 250
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A6A7FPR6_9CRUS (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR6_9CRUS) HSP 1 Score: 84.0 bits (206), Expect = 4.540e-18 Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKV-DEFTPNISQRFRMKDL 258
V ++ KSLYGLKQSGRNWNN L +FLV IG ++S D CLY D + ++ +YVDD+++A V D+ ++ RF+MKDL
Sbjct: 112 VCKLNKSLYGLKQSGRNWNNVLHDFLVNIGFEQSFADQCLYTRYKDNIKIILI--IYVDDIILAASNNAVLDDVKISLCNRFKMKDL 196
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A7D9F138_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F138_PARCT) HSP 1 Score: 85.9 bits (211), Expect = 1.550e-17 Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 258
V+R++KSLYGLKQSGRN N LDE+L+ G R+ D C+Y + GE+ I+ ++VDDL+IA +K+ +F N+ +FRMKDL
Sbjct: 272 VYRLKKSLYGLKQSGRNLNRVLDEYLISDGFVRNPVDHCVY-QKQTGEDIIIV-VIWVDDLIIASNNTDKISQFKENMKSKFRMKDL 356
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A6A7FPR7_9CRUS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR7_9CRUS) HSP 1 Score: 83.6 bits (205), Expect = 2.090e-17 Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKV-DEFTPNISQRFRMKDL 258
V ++ KSLYGLKQSGRNWNN L +FLV IG ++S D CLY D + ++ +YVDD+++A V D+ ++ RF+MKDL
Sbjct: 127 VCKLNKSLYGLKQSGRNWNNLLHDFLVNIGFEQSFADQCLYTRYKDNIKIILI--IYVDDIILAASNNAVLDDVKISLCNRFKMKDL 211
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A087T1Z9_STEMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1Z9_STEMI) HSP 1 Score: 84.7 bits (208), Expect = 4.140e-17 Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKVDEFTPNISQRFRMKDL 258
V ++KS+YGL+QSGR WN L++FL+ GL+RS+ C+YF E+ I+G +YVDDL+I G +++EF +I +RF +KDL
Sbjct: 822 VCHLKKSIYGLRQSGRAWNTCLNDFLIQYGLKRSSAKPCIYFCH---EKNIIIG-IYVDDLLIVGNMAEINEFKGSIKKRFSVKDL 903
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A2G8LML6_STIJA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LML6_STIJA) HSP 1 Score: 80.9 bits (198), Expect = 4.960e-17 Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKV-DEFTPNISQRFRMKDLALSHACW 279
V +++KSLYGLKQSGRNWN L E L G QR+ D CLY ++ Y+L V+VDDLVIA E + EF + +F+MKDL W
Sbjct: 91 VWKLQKSLYGLKQSGRNWNQLLHEHLTSEGFQRNPADHCLYHRGVGDQDIYVL--VWVDDLVIAASNETLMSEFKDCMKIKFKMKDLLEISYFW 182
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 5.140e-17 Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGR-REKVDEFTPNISQRFRMKDL 258
V R+RKSLYGLKQSGRNW+ +D + G G S+ D CLY E ++ +YVDDL+IAG R+ VD+F IS+ MKDL
Sbjct: 118 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVI-VLYVDDLIIAGNSRDMVDDFKQAISKEISMKDL 203
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A225UXZ8_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UXZ8_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.340e-16 Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 7 RMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKVDEFTPN-ISQRFRMKDLALSHAC 276
R++KSLYGLKQSG+ WN+T+ +L+ +G RS D CLYF R + + T +LG +YVDD+V+ +RE ++ N ++++F++KD+ + C
Sbjct: 16 RLQKSLYGLKQSGKLWNDTIHNYLLELGFMRSRLDPCLYFHRQNAKLT-VLG-LYVDDVVVVSQRESDTDWVMNKLAEQFQIKDMGPAKKC 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22089.5844.1 >prot_H-paniculata_contig22089.5844.1 ID=prot_H-paniculata_contig22089.5844.1|Name=mRNA_H-paniculata_contig22089.5844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILback to top mRNA from alignment at H-paniculata_contig22089:3101..3385+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22089.5844.1 ID=mRNA_H-paniculata_contig22089.5844.1|Name=mRNA_H-paniculata_contig22089.5844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig22089:3101..3385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22089:3101..3385+ >mRNA_H-paniculata_contig22089.5844.1 ID=mRNA_H-paniculata_contig22089.5844.1|Name=mRNA_H-paniculata_contig22089.5844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig22089:3101..3385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |