mRNA_H-paniculata_contig22089.5844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22089.5844.1
Unique NamemRNA_H-paniculata_contig22089.5844.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 90.1 bits (222), Expect = 5.120e-19
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 258
            V+R++KSLYGLKQSGRNWN  LDE+L+  G  R+  D C+Y  +  GE+  I+  ++VDDL+IA    +K+ +F  N+  +FRMKDL
Sbjct:  313 VYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY-QKQTGEDIIIV-VIWVDDLIIASSNTDKISQFKENMKSKFRMKDL 397          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 89.7 bits (221), Expect = 5.940e-19
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 258
            V+R++KSLYGLKQSGRNWN  LDE+L+  G  R+  D C+Y  +  GE+  I+  ++VDDL+IA    +K+ +F  N+  +FRMKDL
Sbjct:  288 VYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY-QKQTGEDIIIV-VIWVDDLIIASSNTDKIRQFKENMKSKFRMKDL 372          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A7D9J8D6_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J8D6_PARCT)

HSP 1 Score: 87.8 bits (216), Expect = 6.580e-19
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 258
            V+R++KSLYGLKQSGRNWN  LD +L+  G  R+  D C+Y  +  G+   ++  ++VDDL+IA    +K+ +F  N+  +FRMKDL
Sbjct:  166 VYRLKKSLYGLKQSGRNWNRVLDGYLISDGFVRNPVDHCVYQKQTGGD--IVIVVIWVDDLIIASNNTDKISQFKENMKSKFRMKDL 250          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A6A7FPR6_9CRUS (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR6_9CRUS)

HSP 1 Score: 84.0 bits (206), Expect = 4.540e-18
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKV-DEFTPNISQRFRMKDL 258
            V ++ KSLYGLKQSGRNWNN L +FLV IG ++S  D CLY    D  +  ++  +YVDD+++A     V D+   ++  RF+MKDL
Sbjct:  112 VCKLNKSLYGLKQSGRNWNNVLHDFLVNIGFEQSFADQCLYTRYKDNIKIILI--IYVDDIILAASNNAVLDDVKISLCNRFKMKDL 196          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A7D9F138_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F138_PARCT)

HSP 1 Score: 85.9 bits (211), Expect = 1.550e-17
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRR-EKVDEFTPNISQRFRMKDL 258
            V+R++KSLYGLKQSGRN N  LDE+L+  G  R+  D C+Y  +  GE+  I+  ++VDDL+IA    +K+ +F  N+  +FRMKDL
Sbjct:  272 VYRLKKSLYGLKQSGRNLNRVLDEYLISDGFVRNPVDHCVY-QKQTGEDIIIV-VIWVDDLIIASNNTDKISQFKENMKSKFRMKDL 356          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A6A7FPR7_9CRUS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR7_9CRUS)

HSP 1 Score: 83.6 bits (205), Expect = 2.090e-17
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKV-DEFTPNISQRFRMKDL 258
            V ++ KSLYGLKQSGRNWNN L +FLV IG ++S  D CLY    D  +  ++  +YVDD+++A     V D+   ++  RF+MKDL
Sbjct:  127 VCKLNKSLYGLKQSGRNWNNLLHDFLVNIGFEQSFADQCLYTRYKDNIKIILI--IYVDDIILAASNNAVLDDVKISLCNRFKMKDL 211          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A087T1Z9_STEMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1Z9_STEMI)

HSP 1 Score: 84.7 bits (208), Expect = 4.140e-17
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKVDEFTPNISQRFRMKDL 258
            V  ++KS+YGL+QSGR WN  L++FL+  GL+RS+   C+YF     E+  I+G +YVDDL+I G   +++EF  +I +RF +KDL
Sbjct:  822 VCHLKKSIYGLRQSGRAWNTCLNDFLIQYGLKRSSAKPCIYFCH---EKNIIIG-IYVDDLLIVGNMAEINEFKGSIKKRFSVKDL 903          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A2G8LML6_STIJA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LML6_STIJA)

HSP 1 Score: 80.9 bits (198), Expect = 4.960e-17
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKV-DEFTPNISQRFRMKDLALSHACW 279
            V +++KSLYGLKQSGRNWN  L E L   G QR+  D CLY      ++ Y+L  V+VDDLVIA   E +  EF   +  +F+MKDL      W
Sbjct:   91 VWKLQKSLYGLKQSGRNWNQLLHEHLTSEGFQRNPADHCLYHRGVGDQDIYVL--VWVDDLVIAASNETLMSEFKDCMKIKFKMKDLLEISYFW 182          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.140e-17
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 VHRMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGR-REKVDEFTPNISQRFRMKDL 258
            V R+RKSLYGLKQSGRNW+  +D +  G G   S+ D CLY       E  ++  +YVDDL+IAG  R+ VD+F   IS+   MKDL
Sbjct:  118 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVI-VLYVDDLIIAGNSRDMVDDFKQAISKEISMKDL 203          
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Match: A0A225UXZ8_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UXZ8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.340e-16
Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    7 RMRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYILGTVYVDDLVIAGRREKVDEFTPN-ISQRFRMKDLALSHAC 276
            R++KSLYGLKQSG+ WN+T+  +L+ +G  RS  D CLYF R + + T +LG +YVDD+V+  +RE   ++  N ++++F++KD+  +  C
Sbjct:   16 RLQKSLYGLKQSGKLWNDTIHNYLLELGFMRSRLDPCLYFHRQNAKLT-VLG-LYVDDVVVVSQRESDTDWVMNKLAEQFQIKDMGPAKKC 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22089.5844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7HLY2_PARCT5.120e-1949.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HG25_PARCT5.940e-1949.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9J8D6_PARCT6.580e-1945.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A7FPR6_9CRUS4.540e-1847.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9F138_PARCT1.550e-1748.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A7FPR7_9CRUS2.090e-1747.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A087T1Z9_STEMI4.140e-1746.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8LML6_STIJA4.960e-1746.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TII5_9STRA5.140e-1749.43Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A225UXZ8_9STRA1.340e-1642.86Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22089contigH-paniculata_contig22089:3101..3385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue5e-12
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size276
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929606.540362-UTR-H-paniculata_contig22089:3100..31091622929606.540362-UTR-H-paniculata_contig22089:3100..3109Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22089 3101..3109 +
1691480933.2248302-UTR-H-paniculata_contig22089:3100..31091691480933.2248302-UTR-H-paniculata_contig22089:3100..3109Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22089 3101..3109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929606.5671723-CDS-H-paniculata_contig22089:3109..33851622929606.5671723-CDS-H-paniculata_contig22089:3109..3385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22089 3110..3385 +
1691480933.2357142-CDS-H-paniculata_contig22089:3109..33851691480933.2357142-CDS-H-paniculata_contig22089:3109..3385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22089 3110..3385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22089.5844.1prot_H-paniculata_contig22089.5844.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22089 3110..3385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22089.5844.1

>prot_H-paniculata_contig22089.5844.1 ID=prot_H-paniculata_contig22089.5844.1|Name=mRNA_H-paniculata_contig22089.5844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MRKSLYGLKQSGRNWNNTLDEFLVGIGLQRSTTDSCLYFSRDDGEETYIL
GTVYVDDLVIAGRREKVDEFTPNISQRFRMKDLALSHACWK*
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mRNA from alignment at H-paniculata_contig22089:3101..3385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22089.5844.1 ID=mRNA_H-paniculata_contig22089.5844.1|Name=mRNA_H-paniculata_contig22089.5844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig22089:3101..3385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCATCGCATGCGTAAAAGCCTATATGGCCTCAAGCAGAGCGGCCGTAA CTGGAATAACACTCTTGACGAATTTCTTGTTGGGATAGGACTCCAGCGTT CCACTACCGACTCATGCTTGTACTTCTCTCGTGACGATGGGGAAGAGACA TACATTCTCGGGACCGTGTATGTTGACGACCTGGTCATTGCTGGCCGTCG TGAGAAAGTAGATGAGTTCACGCCTAACATAAGTCAGCGTTTTAGAATGA AAGACTTGGCTCTCTCTCACGCGTGTTGGAAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22089:3101..3385+

>mRNA_H-paniculata_contig22089.5844.1 ID=mRNA_H-paniculata_contig22089.5844.1|Name=mRNA_H-paniculata_contig22089.5844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig22089:3101..3385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTAAAAGCCTATATGGCCTCAAGCAGAGCGGCCGTAACTGGAATAA
CACTCTTGACGAATTTCTTGTTGGGATAGGACTCCAGCGTTCCACTACCG
ACTCATGCTTGTACTTCTCTCGTGACGATGGGGAAGAGACATACATTCTC
GGGACCGTGTATGTTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGT
AGATGAGTTCACGCCTAACATAAGTCAGCGTTTTAGAATGAAAGACTTGG
CTCTCTCTCACGCGTGTTGGAAATAGATGCGTAAAAGCCTATATGGCCTC
AAGCAGAGCGGCCGTAACTGGAATAACACTCTTGACGAATTTCTTGTTGG
GATAGGACTCCAGCGTTCCACTACCGACTCATGCTTGTACTTCTCTCGTG
ACGATGGGGAAGAGACATACATTCTCGGGACCGTGTATGTTGACGACCTG
GTCATTGCTGGCCGTCGTGAGAAAGTAGATGAGTTCACGCCTAACATAAG
TCAGCGTTTTAGAATGAAAGACTTGGCTCTCTCTCACGCGTGTTGGAAAT
AG
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