prot_H-paniculata_contig22082.5842.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22082.5842.1
Unique Nameprot_H-paniculata_contig22082.5842.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length141
Homology
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.360e-24
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    1 MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKAKG 58
            +WI+RINAGVRQHG+ YS F+N+A+ ADV+LNRKVL+EMAVTEPYSFRAVVETVKAKG
Sbjct:   54 LWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKG 111          
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A812NSR7_9DINO (RplT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NSR7_9DINO)

HSP 1 Score: 84.3 bits (207), Expect = 6.600e-18
Identity = 37/60 (61.67%), Postives = 51/60 (85.00%), Query Frame = 0
Query:    1 MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKAKGGS 60
            +WI ++NAG++QHG  YS FI+ A ++DV LNRKVL+++A+TEPYSF+AVVETV+A G S
Sbjct:   51 LWITQVNAGLQQHGFRYSDFIHSAALSDVALNRKVLAQLAITEPYSFKAVVETVRATGHS 110          
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: R6P7I3_9CLOT (50S ribosomal protein L20 n=2 Tax=Terrabacteria group TaxID=1783272 RepID=R6P7I3_9CLOT)

HSP 1 Score: 82.4 bits (202), Expect = 1.220e-17
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    1 MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKAK 57
            +WI RINA VRQHG+SYS+F+N  K AD+Q+NRK+L+EMAV EP +F  VVET KAK
Sbjct:   59 LWIVRINAAVRQHGLSYSKFMNALKKADIQVNRKMLAEMAVNEPEAFSVVVETAKAK 115          
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A2J7ZXC1_9CHLO (50S ribosomal protein L20 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZXC1_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 1.680e-17
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    1 MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKAKGGS 60
            +WIQRINAG R+HG++Y+ FI   K  +VQLNRKVLSE+A+ EPYSF+A+VE VK   GS
Sbjct:   51 VWIQRINAGTREHGVTYTSFITGLKAENVQLNRKVLSELAMNEPYSFKALVEQVKFMRGS 110          
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A2R5GTP0_9STRA (50S ribosomal protein L20 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTP0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-16
Identity = 34/56 (60.71%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    1 MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKA 56
            +WIQ++NAGV +HG+SYS F++Q   + V+LNRKVL++MA+TEP+SFRA+VE  KA
Sbjct:   52 LWIQQVNAGVGEHGMSYSNFVHQLNQSKVELNRKVLADMAITEPFSFRAIVELCKA 107          
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A7S3VIJ1_DUNTE (50S ribosomal protein L20 n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VIJ1_DUNTE)

HSP 1 Score: 79.7 bits (195), Expect = 1.340e-16
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 0
Query:    1 MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKAKGGSP 61
            +WIQRINAG R+HG++YS+F+      ++QLNRKVLSE+A+TEP+SF+A+V+ VK   G P
Sbjct:   50 LWIQRINAGTREHGLTYSQFMPGLSAQNIQLNRKVLSELAMTEPFSFKALVDQVKMMKGPP 110          
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: D8TQ00_VOLCA (50S ribosomal protein L20 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQ00_VOLCA)

HSP 1 Score: 79.3 bits (194), Expect = 2.000e-16
Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 0
Query:    1 MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKAKGGSP 61
            +WIQRINAG R+HG++Y+  I + K  +VQLNRKVLSE+A+ EPYSF+A+VE V+   G+P
Sbjct:   51 VWIQRINAGTREHGMTYTTLITRLKDENVQLNRKVLSELAMNEPYSFKALVEQVRFMRGTP 111          
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A7S0S3R6_9CHLO (50S ribosomal protein L20 n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S3R6_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 2.160e-16
Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKAKGGS 60
            +WIQRINAG R+HG+ YS+FI     A++QLNRKVLSE+A++EP+SF+A+V+ VK   G+
Sbjct:   55 LWIQRINAGTREHGLPYSQFITGLDKANIQLNRKVLSELAMSEPFSFKAIVDQVKMMRGA 114          
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A835YCV0_9CHLO (50S ribosomal protein L20 n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YCV0_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 4.800e-16
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    1 MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVK-AKGGSPP 62
            +WI RINAG R+HG+SYS  I   K  +VQLNRKVLSE+A+ EP+SFRA+VE V+  +GG PP
Sbjct:   51 VWITRINAGSREHGMSYSTLITGLKQENVQLNRKVLSELAMAEPFSFRALVEQVRFMRGGGPP 113          
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A7S2PHZ4_9STRA (50S ribosomal protein L20 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PHZ4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.450e-16
Identity = 35/55 (63.64%), Postives = 47/55 (85.45%), Query Frame = 0
Query:    1 MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVK 55
            +WI+RINAGVRQHG+SYS+FIN +  +  +LNRKVL++MA  EP+SF+AVV+ VK
Sbjct:   64 LWIERINAGVRQHGMSYSKFINGSMHSGCELNRKVLADMASNEPFSFKAVVDVVK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G284_ECTSI1.360e-2481.0350S ribosomal protein L20 n=1 Tax=Ectocarpus silic... [more]
A0A812NSR7_9DINO6.600e-1861.67RplT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
R6P7I3_9CLOT1.220e-1766.6750S ribosomal protein L20 n=2 Tax=Terrabacteria gr... [more]
A0A2J7ZXC1_9CHLO1.680e-1763.3350S ribosomal protein L20 n=1 Tax=Tetrabaena socia... [more]
A0A2R5GTP0_9STRA1.150e-1660.7150S ribosomal protein L20 n=1 Tax=Hondaea fermenta... [more]
A0A7S3VIJ1_DUNTE1.340e-1657.3850S ribosomal protein L20 n=1 Tax=Dunaliella terti... [more]
D8TQ00_VOLCA2.000e-1659.0250S ribosomal protein L20 n=1 Tax=Volvox carteri f... [more]
A0A7S0S3R6_9CHLO2.160e-1658.3350S ribosomal protein L20 n=1 Tax=Chlamydomonas le... [more]
A0A835YCV0_9CHLO4.800e-1661.9050S ribosomal protein L20 n=1 Tax=Edaphochlamys de... [more]
A0A7S2PHZ4_9STRA7.450e-1663.6450S ribosomal protein L20 n=1 Tax=Leptocylindrus d... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 1..49
e-value: 4.0E-18
score: 65.5
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 1..55
e-value: 3.9E-20
score: 70.2
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 1..60
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20coord: 1..58
e-value: 4.5E-25
score: 89.0
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 1..56
NoneNo IPR availablePANTHERPTHR10986:SF16LP04985Pcoord: 1..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22082contigH-paniculata_contig22082:1461..2116 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22082.5842.1mRNA_H-paniculata_contig22082.5842.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22082 821..3149 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22082.5842.1 ID=prot_H-paniculata_contig22082.5842.1|Name=mRNA_H-paniculata_contig22082.5842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAV
VETVKAKGGSPPPEGRSISLAFDKNAIVDFDDLENDEDGREAHNDDDDVR
IVRGVIANDGEEEGEASASSLEADEEDKNITARASTTSSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
IPR035566Ribosomal_protein_L20_C