mRNA_H-paniculata_contig22082.5842.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI) HSP 1 Score: 152 bits (383), Expect = 1.050e-40 Identity = 74/94 (78.72%), Postives = 87/94 (92.55%), Query Frame = 3
Query: 3 FRGRHKNVFKIAIQHVEKSLQYAYRDRKNKRRDFHRMWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKAKG 284
+RGR K+VFKIAIQ VEK+LQ AYRDRKNK+R+F R+WI+RINAGVRQHG+ YS F+N+A+ ADV+LNRKVL+EMAVTEPYSFRAVVETVKAKG
Sbjct: 18 YRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKG 111
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: C1EFY8_MICCC (50S ribosomal protein L20 n=2 Tax=Micromonas TaxID=38832 RepID=C1EFY8_MICCC) HSP 1 Score: 121 bits (303), Expect = 2.830e-29 Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 3
Query: 3 FRGRHKNVFKIAIQHVEKSLQYAYRDRKNKRRDFHRMWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKAKGGSP--PPE 302
FRGR KN +IA VEK+LQYAYRDRK K+RDF +WIQ+INAG R+HGI Y FI+ K ++QLNRK+L+++A EPYSF+A+V+TVK G P PP+
Sbjct: 13 FRGRAKNTIRIARNRVEKALQYAYRDRKAKKRDFRGLWIQQINAGTREHGIGYGEFISGLKDENIQLNRKMLADLAQNEPYSFKALVDTVKRMRGYPVDPPK 114
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A7S2W484_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W484_9STRA) HSP 1 Score: 124 bits (312), Expect = 3.640e-29 Identity = 59/94 (62.77%), Postives = 79/94 (84.04%), Query Frame = 3
Query: 3 FRGRHKNVFKIAIQHVEKSLQYAYRDRKNKRRDFHRMWIQRINAGVRQHGISYSRFINQAKI-ADVQLNRKVLSEMAVTEPYSFRAVVETVKAK 281
+RGR KN F+ AI+ VEK+LQYAYRDRK K+R+F ++WIQR+NAGVRQHG+SYSRFI A + AD+ LNR++L+E++ EP+SF+AVV+ VK K
Sbjct: 130 YRGRSKNTFRAAIRRVEKALQYAYRDRKVKKRNFRKLWIQRLNAGVRQHGMSYSRFIRAAPLDADIVLNRRMLAELSTNEPFSFKAVVDVVKMK 223
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A7S2PHZ4_9STRA (50S ribosomal protein L20 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PHZ4_9STRA) HSP 1 Score: 121 bits (303), Expect = 4.170e-29 Identity = 57/91 (62.64%), Postives = 74/91 (81.32%), Query Frame = 3
Query: 3 FRGRHKNVFKIAIQHVEKSLQYAYRDRKNKRRDFHRMWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVK 275
FRGR FK A+Q +EKS QYAYRDRK K+R+F ++WI+RINAGVRQHG+SYS+FIN + + +LNRKVL++MA EP+SF+AVV+ VK
Sbjct: 28 FRGRANRTFKAALQRLEKSWQYAYRDRKQKKRNFRKLWIERINAGVRQHGMSYSKFINGSMHSGCELNRKVLADMASNEPFSFKAVVDVVK 118
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: UPI00041B8A37 (50S ribosomal protein L20 n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI00041B8A37) HSP 1 Score: 120 bits (302), Expect = 4.820e-29 Identity = 54/91 (59.34%), Postives = 77/91 (84.62%), Query Frame = 3
Query: 3 FRGRHKNVFKIAIQHVEKSLQYAYRDRKNKRRDFHRMWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVK 275
+RGR+ F+IAI+ VEK+L+YAYRDR+NK+RDF +WIQRINAGVRQHG++YSRFIN K+A ++++RKVL+++A EP SF+A+V+ +
Sbjct: 24 YRGRNSTCFRIAIEKVEKALRYAYRDRRNKKRDFRGLWIQRINAGVRQHGLTYSRFINGIKLAGIEMDRKVLADLAAREPDSFKALVDRAR 114
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A7S2PGZ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PGZ0_9STRA) HSP 1 Score: 121 bits (303), Expect = 1.130e-28 Identity = 57/91 (62.64%), Postives = 74/91 (81.32%), Query Frame = 3
Query: 3 FRGRHKNVFKIAIQHVEKSLQYAYRDRKNKRRDFHRMWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVK 275
FRGR FK A+Q +EKS QYAYRDRK K+R+F ++WI+RINAGVRQHG+SYS+FIN + + +LNRKVL++MA EP+SF+AVV+ VK
Sbjct: 62 FRGRANRTFKAALQRLEKSWQYAYRDRKQKKRNFRKLWIERINAGVRQHGMSYSKFINGSMHSGCELNRKVLADMASNEPFSFKAVVDVVK 152
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT) HSP 1 Score: 119 bits (299), Expect = 1.240e-28 Identity = 51/91 (56.04%), Postives = 78/91 (85.71%), Query Frame = 3
Query: 3 FRGRHKNVFKIAIQHVEKSLQYAYRDRKNKRRDFHRMWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVK 275
+RGR KNVF++AIQ VEK+LQYAYRDR+ K+R+F +WIQRINAG R+HG+SYS+FI+ K A+++++RK+LS++A+ P +F+++VE ++
Sbjct: 24 YRGRSKNVFRVAIQRVEKALQYAYRDRRTKKRNFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A2E1PFG4_9PROT (50S ribosomal protein L20 n=1 Tax=Pelagibacteraceae bacterium TaxID=2026775 RepID=A0A2E1PFG4_9PROT) HSP 1 Score: 119 bits (298), Expect = 1.610e-28 Identity = 54/91 (59.34%), Postives = 76/91 (83.52%), Query Frame = 3
Query: 6 RGRHKNVFKIAIQHVEKSLQYAYRDRKNKRRDFHRMWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKA 278
RGR KNVF++A Q ++K+LQYAYRDR+ K+RDF +WIQRINAGVR+HG++Y+ FIN K A++++NRK+LSE+A EP +F+A+VE K+
Sbjct: 25 RGRRKNVFRVATQSMDKALQYAYRDRRVKKRDFRGLWIQRINAGVREHGLTYATFINGLKKANIEINRKMLSEIAFHEPIAFKAIVEKAKS 115
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: UPI00115C827F (50S ribosomal protein L20 n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115C827F) HSP 1 Score: 119 bits (298), Expect = 1.710e-28 Identity = 54/92 (58.70%), Postives = 76/92 (82.61%), Query Frame = 3
Query: 3 FRGRHKNVFKIAIQHVEKSLQYAYRDRKNKRRDFHRMWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKA 278
+RGR KN F++AIQ VEK+L+YAYRDR+NK+R+F +WIQRINAG RQHG++YSRF+N K A ++L+RKVLS++A EP +F+++V+ A
Sbjct: 24 YRGRAKNCFRVAIQRVEKALRYAYRDRRNKKRNFRALWIQRINAGTRQHGLTYSRFMNGLKKAGIELDRKVLSDIATREPEAFKSLVQQASA 115
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Match: A0A7S3VIJ1_DUNTE (50S ribosomal protein L20 n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VIJ1_DUNTE) HSP 1 Score: 119 bits (297), Expect = 1.980e-28 Identity = 57/97 (58.76%), Postives = 74/97 (76.29%), Query Frame = 3
Query: 3 FRGRHKNVFKIAIQHVEKSLQYAYRDRKNKRRDFHRMWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVVETVKAKGGSP 293
FRGR KNVF IA V K+LQ+AYR RK K+RD +WIQRINAG R+HG++YS+F+ ++QLNRKVLSE+A+TEP+SF+A+V+ VK G P
Sbjct: 14 FRGRAKNVFSIARSRVHKALQHAYRGRKEKKRDMRALWIQRINAGTREHGLTYSQFMPGLSAQNIQLNRKVLSELAMTEPFSFKALVDQVKMMKGPP 110 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22082.5842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22082.5842.1 >prot_H-paniculata_contig22082.5842.1 ID=prot_H-paniculata_contig22082.5842.1|Name=mRNA_H-paniculata_contig22082.5842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp MWIQRINAGVRQHGISYSRFINQAKIADVQLNRKVLSEMAVTEPYSFRAVback to top mRNA from alignment at H-paniculata_contig22082:821..3149+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22082.5842.1 ID=mRNA_H-paniculata_contig22082.5842.1|Name=mRNA_H-paniculata_contig22082.5842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2329bp|location=Sequence derived from alignment at H-paniculata_contig22082:821..3149+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22082:821..3149+ >mRNA_H-paniculata_contig22082.5842.1 ID=mRNA_H-paniculata_contig22082.5842.1|Name=mRNA_H-paniculata_contig22082.5842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig22082:821..3149+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |