prot_H-paniculata_contig2206.5839.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2206.5839.1
Unique Nameprot_H-paniculata_contig2206.5839.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length125
Homology
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BLAST of mRNA_H-paniculata_contig2206.5839.1 vs. uniprot
Match: A0A6H5KJ99_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJ99_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.720e-7
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0 
Query:   66 RLQATLDIDTAQTST----GELKRKLLKSVAGVNRGLSCREAEMTDILELVEQLE 116
            RL +++ +D   TST    G+LK +LL++ AGVNRGLSCRE +  +ILE+VE+LE
Sbjct:   62 RLSSSVIVDVESTSTDEPVGDLKARLLRASAGVNRGLSCREGDQEEILEIVEELE 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2206.5839.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ99_9PHAE1.720e-752.73PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006843Plastid lipid-associated protein/fibrillin conserved domainPFAMPF04755PAP_fibrillincoord: 82..117
e-value: 5.4E-5
score: 23.2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..124
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..24
score: 0.504
NoneNo IPR availableTMHMMTMhelixcoord: 12..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2206contigH-paniculata_contig2206:2437..14589 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2206.5839.1mRNA_H-paniculata_contig2206.5839.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2206 2281..14702 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2206.5839.1 ID=prot_H-paniculata_contig2206.5839.1|Name=mRNA_H-paniculata_contig2206.5839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MMTKTMEPMATALIFIILIGGASTFLTGGFVDTCGHAPRRHGGRGLQPWT
HPRIDVVSSVGPVWWRLQATLDIDTAQTSTGELKRKLLKSVAGVNRGLSC
REAEMTDILELVEQLEVRCDRHDV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom