mRNA_H-paniculata_contig2205.5835.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2205.5835.1
Unique NamemRNA_H-paniculata_contig2205.5835.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2205.5835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2205contigH-paniculata_contig2205:13929..14704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size776
Cds size774
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929605.295602-CDS-H-paniculata_contig2205:13928..147021622929605.295602-CDS-H-paniculata_contig2205:13928..14702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2205 13929..14702 +
1691480932.6814415-CDS-H-paniculata_contig2205:13928..147021691480932.6814415-CDS-H-paniculata_contig2205:13928..14702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2205 13929..14702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2205.5835.1prot_H-paniculata_contig2205.5835.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2205 13929..14702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2205.5835.1

>prot_H-paniculata_contig2205.5835.1 ID=prot_H-paniculata_contig2205.5835.1|Name=mRNA_H-paniculata_contig2205.5835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
RRKGDADGERAAAQRVMRVVNTNKKWKEKLREADARGEMYKSAAEASEIG
MQELVRDKADLLEVNRILGKRLTELLGEAPVEDTKKDENNQIRENAMFAS
RGEGEGMKTTGTQRAASGLTATVGNTTGSPNVCDTATKNGTGPGQDAQRN
IASKQYDNAHCVGSPTMIYRSSEHTNADMVQSGISVSPVLPASGTQLPQD
APSALFSRPVVGGSANFRRRPRPWLHHRSASEPGPLPSHRSHPDEVYTSG
SKSSASSK
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mRNA from alignment at H-paniculata_contig2205:13929..14704+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2205.5835.1 ID=mRNA_H-paniculata_contig2205.5835.1|Name=mRNA_H-paniculata_contig2205.5835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=776bp|location=Sequence derived from alignment at H-paniculata_contig2205:13929..14704+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGGAAGGGGGATGCCGATGGTGAAAGGGCGGCAGCACAAAGGGTTAT
GAGAGTTGTAAACACCAATAAGAAGTGGAAGGAGAAACTGCGGGAAGCCG
ATGCGAGGGGAGAGATGTATAAGTCGGCCGCGGAGGCTTCTGAGATAGGG
ATGCAGGAACTAGTGAGGGATAAAGCGGACTTACTGGAAGTTAATCGAAT
TTTGGGGAAAAGGCTGACAGAACTGCTTGGGGAAGCACCTGTTGAGGATA
CCAAAAAGGATGAGAACAACCAAATCAGAGAAAACGCCATGTTTGCTAGC
CGAGGTGAGGGCGAAGGGATGAAAACGACGGGAACACAGCGTGCAGCTTC
AGGTTTGACTGCAACAGTGGGAAATACGACCGGTAGTCCGAACGTATGCG
ATACAGCAACAAAGAACGGCACCGGTCCTGGACAAGACGCGCAGAGAAAC
ATTGCTTCCAAGCAGTATGACAACGCGCATTGTGTGGGGAGTCCAACGAT
GATATATCGATCCTCTGAGCACACAAATGCTGACATGGTCCAAAGTGGTA
TATCGGTATCCCCAGTATTGCCTGCTTCCGGTACCCAGCTTCCGCAAGAT
GCCCCATCTGCACTTTTTTCCCGACCTGTTGTTGGTGGGTCAGCGAACTT
TCGCCGTCGACCACGACCCTGGCTCCACCATCGTTCAGCTAGTGAACCGG
GTCCACTACCATCCCATCGCAGCCATCCTGACGAGGTGTACACTTCAGGC
AGCAAGTCTTCAGCGTCATCGAAGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig2205:13929..14704+

>mRNA_H-paniculata_contig2205.5835.1 ID=mRNA_H-paniculata_contig2205.5835.1|Name=mRNA_H-paniculata_contig2205.5835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig2205:13929..14704+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGGAAGGGGGATGCCGATGGTGAAAGGGCGGCAGCACAAAGGGTTAT
GAGAGTTGTAAACACCAATAAGAAGTGGAAGGAGAAACTGCGGGAAGCCG
ATGCGAGGGGAGAGATGTATAAGTCGGCCGCGGAGGCTTCTGAGATAGGG
ATGCAGGAACTAGTGAGGGATAAAGCGGACTTACTGGAAGTTAATCGAAT
TTTGGGGAAAAGGCTGACAGAACTGCTTGGGGAAGCACCTGTTGAGGATA
CCAAAAAGGATGAGAACAACCAAATCAGAGAAAACGCCATGTTTGCTAGC
CGAGGTGAGGGCGAAGGGATGAAAACGACGGGAACACAGCGTGCAGCTTC
AGGTTTGACTGCAACAGTGGGAAATACGACCGGTAGTCCGAACGTATGCG
ATACAGCAACAAAGAACGGCACCGGTCCTGGACAAGACGCGCAGAGAAAC
ATTGCTTCCAAGCAGTATGACAACGCGCATTGTGTGGGGAGTCCAACGAT
GATATATCGATCCTCTGAGCACACAAATGCTGACATGGTCCAAAGTGGTA
TATCGGTATCCCCAGTATTGCCTGCTTCCGGTACCCAGCTTCCGCAAGAT
GCCCCATCTGCACTTTTTTCCCGACCTGTTGTTGGTGGGTCAGCGAACTT
TCGCCGTCGACCACGACCCTGGCTCCACCATCGTTCAGCTAGTGAACCGG
GTCCACTACCATCCCATCGCAGCCATCCTGACGAGGTGTACACTTCAGGC
AGCAAGTCTTCAGCGTCATCGAAGCGCAGGAAGGGGGATGCCGATGGTGA
AAGGGCGGCAGCACAAAGGGTTATGAGAGTTGTAAACACCAATAAGAAGT
GGAAGGAGAAACTGCGGGAAGCCGATGCGAGGGGAGAGATGTATAAGTCG
GCCGCGGAGGCTTCTGAGATAGGGATGCAGGAACTAGTGAGGGATAAAGC
GGACTTACTGGAAGTTAATCGAATTTTGGGGAAAAGGCTGACAGAACTGC
TTGGGGAAGCACCTGTTGAGGATACCAAAAAGGATGAGAACAACCAAATC
AGAGAAAACGCCATGTTTGCTAGCCGAGGTGAGGGCGAAGGGATGAAAAC
GACGGGAACACAGCGTGCAGCTTCAGGTTTGACTGCAACAGTGGGAAATA
CGACCGGTAGTCCGAACGTATGCGATACAGCAACAAAGAACGGCACCGGT
CCTGGACAAGACGCGCAGAGAAACATTGCTTCCAAGCAGTATGACAACGC
GCATTGTGTGGGGAGTCCAACGATGATATATCGATCCTCTGAGCACACAA
ATGCTGACATGGTCCAAAGTGGTATATCGGTATCCCCAGTATTGCCTGCT
TCCGGTACCCAGCTTCCGCAAGATGCCCCATCTGCACTTTTTTCCCGACC
TGTTGTTGGTGGGTCAGCGAACTTTCGCCGTCGACCACGACCCTGGCTCC
ACCATCGTTCAGCTAGTGAACCGGGTCCACTACCATCCCATCGCAGCCAT
CCTGACGAGGTGTACACTTCAGGCAGCAAGTCTTCAGCGTCATCGAAG
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