mRNA_H-paniculata_contig22046.5833.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22046.5833.1
Unique NamemRNA_H-paniculata_contig22046.5833.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Match: D7FVG0_ECTSI (Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG0_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 4.040e-31
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:   76 KGGYLWKRSTNVRKDWKRRYFFMQNGKLYYQRQETSVSEPVRVCDIKFSTVKSCLGDSDLRFSFQIISPKQRT-YLLQ 306
            KGGYLWKRSTNVRKDW+RRYFF+QNGKL+YQRQET VS   RVCDIK   V+SCL D+DLRFSF+IISP++RT YLLQ
Sbjct:  277 KGGYLWKRSTNVRKDWQRRYFFIQNGKLFYQRQETFVSPAKRVCDIKLCHVRSCLKDTDLRFSFEIISPQRRTTYLLQ 354
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BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.910e-31
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:   76 KGGYLWKRSTNVRKDWKRRYFFMQNGKLYYQRQETSVSEPVRVCDIKFSTVKSCLGDSDLRFSFQIISPKQRT-YLLQ 306
            KGGYLWKRSTNVRKDW+RRYFF+QNGKL+YQRQET VS   RVCDIK   V+SCL D+DLRFSF+IISP++RT YLLQ
Sbjct:  531 KGGYLWKRSTNVRKDWQRRYFFIQNGKLFYQRQETFVSPAKRVCDIKLCHVRSCLKDTDLRFSFEIISPQRRTTYLLQ 608
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BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.030e-26
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:   76 KGGYLWKRSTNVRKDWKRRYFFMQNGKLYYQRQETSVSEPVRVCDIKFSTVKSCLGDSDLRFSFQIISPKQRT 294
            K GYLWKRS NVR+DWKRR+F +QNGKLYYQRQET+VS PV VCDI+  TV++C   SD RF F+IISPKQRT
Sbjct:  791 KSGYLWKRSNNVRRDWKRRFFCIQNGKLYYQRQETAVSPPVLVCDIQLCTVRACDKGSDPRFCFEIISPKQRT 863
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BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Match: A0A4D9CVE4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVE4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.590e-21
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:   67 SIRKGGYLWKRSTNVRKDWKRRYFFMQNGKLYYQRQETSVSEP-VRVCDIKFSTVKSCLGDSDLRFSFQIISPKQRTYLLQ 306
            S  K GYLWKRS NVRKDWKRR+F+++NGKL YQ ++  +  P   +CD+  STV+ C  D+D RF+F+I+SP +R Y+LQ
Sbjct:  742 SCLKQGYLWKRSNNVRKDWKRRFFYIRNGKLSYQCEDDPIGPPRAEICDLLISTVRECSRDTDTRFTFEILSPGKRPYMLQ 822
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BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Match: A0A7S1XSU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSU2_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.410e-15
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   43 VAGRIESGSIRKGGYLWKRSTNVRKDWKRRYFFMQNGKLYYQRQETSVSEPVRVCDIKFSTVKSCLGDSDLRFSFQIISPKQRTYLLQ 306
            + G   S  + K G+LWKRS++VRKDWKRR+F +  G+L Y+R E   + PV+VCDI   TV+         FSF +ISP +RT++LQ
Sbjct:  176 MEGHSPSDVVVKAGFLWKRSSSVRKDWKRRWFLIHGGRLCYERLEGGAA-PVKVCDIMLCTVRERKKTHQNLFSFDVISPGRRTFVLQ 262
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BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Match: A0A7R9YAC1_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAC1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.860e-15
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:   61 SGSIRKGGYLWKRSTNVRKDWKRRYFFMQNGKLYYQRQETSVSEPVRVCDIKFSTVKSCLGDSDLRFSFQIISPKQRTYLLQ 306
            S  + K GYLWKRS+NVRKDWKRRYF +  G+L+Y++ E     P +VCDI   TV+  +       SF+IISP  RT+ LQ
Sbjct:  626 SSYVVKEGYLWKRSSNVRKDWKRRYFKIMAGRLFYEKLEGG--PPTKVCDIMLCTVRERVKSHANLHSFEIISPGNRTFTLQ 705
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BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Match: A0A2R5GGS8_9STRA (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGS8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.700e-14
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:   58 ESGSIRKGGYLWKRSTNVRKDWKRRYFFMQNGKLYYQRQETSVSEPVRVCDIKFSTVKSCLG--DSDLRFSFQIISPKQRTYLLQ 306
            +S  + K GYL KRS+ +RK WKRR+F +Q GKL+Y R      +PV +C+  F+TV+       +D+ F F+I+SP +RTY++Q
Sbjct: 1059 KSTPVVKEGYLRKRSSKMRKSWKRRWFVLQGGKLFYIRDYDVCDQPVFICECMFATVREADAAVTNDMSFCFEILSPNRRTYVMQ 1143
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BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Match: X6NJ69_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NJ69_RETFI)

HSP 1 Score: 74.7 bits (182), Expect = 1.740e-13
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:   82 GYLWKRSTNVRKDWKRRYFFMQNGKL-YYQRQETSVSEPVR--VCDIKFSTVKSCLGDSDLRFSFQIISPKQRTYLLQ 306
            GYLWK+STNVRKDWKRR+F ++NG+L YY+ ++    + VR  V D   S VK    D +LRF F++ISP +R Y LQ
Sbjct:  391 GYLWKQSTNVRKDWKRRWFVVENGELAYYRSKDACFFDMVRELVVDTMLSKVKE-RPDHELRFVFELISPSRRVYTLQ 467
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BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Match: A0A7S2RGL5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RGL5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.940e-12
Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   82 GYLWKRSTNVRKDWKRRYFFMQNGKL-YYQRQETSVSEPVRVCDIKFSTVKSCLGDSDLRFSFQIISP-KQRTYLLQ 306
            GYL+KRS+ VRKDWKRR+F ++ GKL YY+  +  V++P+  CDI   TV+  + +S+L+  F+IISP KQR+Y+LQ
Sbjct:  822 GYLYKRSSGVRKDWKRRWFVLRGGKLLYYRGWKDLVAQPI--CDILLCTVRE-VTNSELKCCFEIISPQKQRSYMLQ 895
[Close]
BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Match: X6M8L2_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6M8L2_RETFI)

HSP 1 Score: 69.7 bits (169), Expect = 9.270e-12
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   82 GYLWKRSTNVRKDWKRRYFFMQNGKLYYQRQETSVSEPVRVCDIKFSTVKSCLGDSDLRFSFQIISPKQRTYLLQ 306
            GYLWK+STNVRKDWKRR+F +++G+L Y R + ++   + V D     VK    D +L+F F++ISP +R Y LQ
Sbjct:   67 GYLWKQSTNVRKDWKRRWFVVESGELAYYRSKDNMVREL-VVDTMLCKVKERF-DHELKFVFELISPSRRVYTLQ 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22046.5833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVG0_ECTSI4.040e-3178.21Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpu... [more]
A0A6H5L2J8_9PHAE4.910e-3178.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCL2_9STRA1.030e-2672.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CVE4_9STRA2.590e-2154.32Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1XSU2_9STRA1.410e-1546.59Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9YAC1_9STRA7.860e-1550.00Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A2R5GGS8_9STRA9.700e-1443.53Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
X6NJ69_RETFI1.740e-1352.56Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A7S2RGL5_9STRA2.940e-1251.95Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
X6M8L2_RETFI9.270e-1248.00Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22046contigH-paniculata_contig22046:528..2463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue8e-27
Seed eggNOG ortholog2880.D7FVG0
Preferred nameAGD4
KEGG koko:K12489
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0003002,GO:0003674,GO:0005096,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007275,GO:0007389,GO:0008047,GO:0008150,GO:0008289,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009888,GO:0009965,GO:0009987,GO:0010016,GO:0010033,GO:0010051,GO:0010087,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030234,GO:0030695,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035091,GO:0042221,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050790,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0097708,GO:0098657,GO:0098772,GO:0099402,GO:1905392
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0521@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_000950.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons2
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929605.2256808-CDS-H-paniculata_contig22046:527..6861622929605.2256808-CDS-H-paniculata_contig22046:527..686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22046 528..686 -
1691480932.6526423-CDS-H-paniculata_contig22046:527..6861691480932.6526423-CDS-H-paniculata_contig22046:527..686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22046 528..686 -
1622929605.2450733-CDS-H-paniculata_contig22046:2316..24631622929605.2450733-CDS-H-paniculata_contig22046:2316..2463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22046 2317..2463 -
1691480932.6667843-CDS-H-paniculata_contig22046:2316..24631691480932.6667843-CDS-H-paniculata_contig22046:2316..2463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22046 2317..2463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22046.5833.1prot_H-paniculata_contig22046.5833.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22046 528..2463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22046.5833.1

>prot_H-paniculata_contig22046.5833.1 ID=prot_H-paniculata_contig22046.5833.1|Name=mRNA_H-paniculata_contig22046.5833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MSPRAALGAGGSGGVAGRIESGSIRKGGYLWKRSTNVRKDWKRRYFFMQN
GKLYYQRQETSVSEPVRVCDIKFSTVKSCLGDSDLRFSFQIISPKQRTYL
LQ
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mRNA from alignment at H-paniculata_contig22046:528..2463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22046.5833.1 ID=mRNA_H-paniculata_contig22046.5833.1|Name=mRNA_H-paniculata_contig22046.5833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1936bp|location=Sequence derived from alignment at H-paniculata_contig22046:528..2463- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCCTCGAGCAGCGCTGGGGGCGGGAGGGAGCGGGGGGGTCGCCGG
GCGAATCGAGTCGGGGAGCATTAGGAAGGGGGGGTACTTGTGGAAGCGGA
GCACTAATGTGAGGAAGGATTGGAAGCGGCGGTATTTCTTTATGCAGGTG
AGTCGGGGGGGGGGGTTAACTGTTATTTAATCGTTGTACCCCTCGAACAA
ATACGAATGGAGCATTCGTAACTATCTCGAACTTTTATTATGTATCTTGG
GTAAACGCGTGTTTATTCCTTCACAAGTCTATGAATGGTCACTCTAAAGG
TGGTCACAGGTGGTCGTGTACCCGGCGAACAGTCACCCATGCAGGTCCTG
TTGATTTTCCGGATGGTACACTCTCTGCCCGAGCTTTTCGATGCTCGATC
GTATGTCGAGTACACTGCATATTGTTCGTGTCACATAGTCATCTTCTCCA
ACTCAAAATAGCTGCAGTATTCATTCCAGATTCCTCGTATTTATTCGTGT
CTTGTATTCGTTGGAACGTTGTGACCTAAACATAATAATGTTTCTCATGT
ACACATTTGACTTACAATCGATGGCCGTACTAATAAATTGACTGGACTGT
GAAGCCATTTTTTTTTTTTTCTTGAATTTTGACTAAATTTATCATAGTTT
TGGTACGATACTTGAGTATACTTACAATCAAAATAATCATGATTCGGTGT
AAAGATGCGGCAGCCACGACCCTGGGTCATCGCTGTCGGTCATGAGTCAA
GGTGGAGGAAAGAGAGGGCGAAAAATACTAAAAATAAATAAATATGAAAT
TCCCATTGAAGTATCTCCATGATATAAAATTTGCATCAAATTCGTAGTAG
TTTCAGTTTTTCGGGGTCTCCATCATGGTGTTGTGGATCGCGGGTCTTGA
CCAAATTTTTTTATCAACCCTAATTTCTGGCAGAATGCGATTGGAAAAAA
ATACAACATTTTTTTTAATTCCTCGTCTCAACGCAATGTAACAAAATTTT
CCTTTGGAATTGGAATTTTTGTTCTTTCATTACGTACAACGCTAGAACAC
ATTTACATCTATTGCAAAATAATTACGTGATCTTAGAGCCAATGATTTAT
TAAATGCATGAGGTATTATAGGAACGCTGACAAGATCAGCTTTGTGGGGA
TACATGCACCTAGCTTGAGAAAACAATATAGCGTCAGTTGCAAGTTGTCA
TTTTCTATTCGTGTTATTCCTAATCTCTTTTTTTTTTTTTCGTTTCATTT
CTAGTCGTCCTCTTTATATATTGTCGTGGTTTTTCATTTTTTTCGTTCTC
GTGGTAATATTTTCGTTTCTAAGTTTAGGAGTAATTGAGATGCAACCAAC
CCGCGTCGAGGTGTTACAATTTTTTATTTTCACATCGGTGCTGAGATTAT
TGCCTTCATCCCGCGCAGCATAGTTGTCACTCTAATTGTTGAGTGCTAAA
CTTTTTTTTCTTTTGTTTTGTCGATGCGGGGGTTCGAACCCATGACCTTG
AGGACGAGAGGCAGACATGTTATATCTCGGTGTCGCCAACCTTAAAATTG
ACATACTTGTACTCGATATATGGAGCTGCCTGTTTTAAGGTGTTACTAAG
GTGGCCACCACTTTTTTTGTCCTTGTTGTCGTCGTCGCGTTTTAAGAATT
TTTTCCTCTCCTAGTCTCCGTTTTCTTTTTTTTCTTTTTTTTCCAAGTTC
GCTGGTCTGTGCTCTGTCTTGTGTCCTTTTTTTTGTCTTGTTTTCTACAT
TTGCGTGCTGCTTTCGTGTCTTTGTAGAACGGTAAGCTGTACTACCAGCG
ACAGGAGACCTCTGTCAGCGAACCGGTTCGCGTGTGTGACATCAAGTTCT
CCACCGTGAAGAGCTGTCTCGGTGATTCCGACCTGCGGTTCTCCTTTCAG
ATTATCTCTCCCAAGCAGCGGACCTATCTACTACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22046:528..2463-

>mRNA_H-paniculata_contig22046.5833.1 ID=mRNA_H-paniculata_contig22046.5833.1|Name=mRNA_H-paniculata_contig22046.5833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig22046:528..2463- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCCTCGAGCAGCGCTGGGGGCGGGAGGGAGCGGGGGGGTCGCCGG
GCGAATCGAGTCGGGGAGCATTAGGAAGGGGGGGTACTTGTGGAAGCGGA
GCACTAATGTGAGGAAGGATTGGAAGCGGCGGTATTTCTTTATGCAGATG
TCGCCTCGAGCAGCGCTGGGGGCGGGAGGGAGCGGGGGGGTCGCCGGGCG
AATCGAGTCGGGGAGCATTAGGAAGGGGGGGTACTTGTGGAAGCGGAGCA
CTAATGTGAGGAAGGATTGGAAGCGGCGGTATTTCTTTATGCAGAACGGT
AAGCTGTACTACCAGCGACAGGAGACCTCTGTCAGCGAACCGGTTCGCGT
GTGTGACATCAAGTTCTCCACCGTGAAGAGCTGTCTCGGTGATTCCGACC
TGCGGTTCTCCTTTCAGATTATCTCTCCCAAGCAGCGGACCTATCTACTA
CAGAACGGTAAGCTGTACTACCAGCGACAGGAGACCTCTGTCAGCGAACC
GGTTCGCGTGTGTGACATCAAGTTCTCCACCGTGAAGAGCTGTCTCGGTG
ATTCCGACCTGCGGTTCTCCTTTCAGATTATCTCTCCCAAGCAGCGGACC
TATCTACTACAG
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