mRNA_H-paniculata_contig22045.5832.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22045.5832.1
Unique NamemRNA_H-paniculata_contig22045.5832.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Match: A0A6H5KVJ9_9PHAE (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVJ9_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 1.010e-114
Identity = 160/182 (87.91%), Postives = 171/182 (93.96%), Query Frame = 1 
Query:    1 GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSGGLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPN--REGEFDRFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKISKSTGNVIDPLDLVDKYGVDPTRYFLMSEV 540
            GA+VEWVEKEPSYFFKLSEWQ+PLL+FY +NP FIAPESRRNEA+SFVSGGL+DLSISRTSFSWGVPVPGDD+HVMYVW+DALANYISALG+P     GEF +FWPADLHVIGKDILRFHSVYWPALLLAAGLEPP RLFVHGWWTKDGQKISKSTGNVIDPLDLV +YGVD TRYFLMSEV
Sbjct:  213 GAEVEWVEKEPSYFFKLSEWQQPLLDFYAENPQFIAPESRRNEAVSFVSGGLRDLSISRTSFSWGVPVPGDDEHVMYVWVDALANYISALGFPEMGEAGEFSKFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPTRLFVHGWWTKDGQKISKSTGNVIDPLDLVARYGVDATRYFLMSEV 394
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BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Match: A0A7S2H077_9STRA (Methionine--tRNA ligase n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H077_9STRA)

HSP 1 Score: 316 bits (809), Expect = 6.240e-105
Identity = 142/182 (78.02%), Postives = 161/182 (88.46%), Query Frame = 1 
Query:    1 GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSGGLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPNRE--GEFDRFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKISKSTGNVIDPLDLVDKYGVDPTRYFLMSEV 540
            GA+VEWV KEPSYFFKLSE++  LLE+YEKNP+FIAPESRRNE + FV  GL+DLSISRT+F WGVPVPGDDDHVMYVWIDALANYISALGYPN E   EFD+FWP  LHV+GKDILRFH++YWPA L+AA L  P+RLF HGWWTKDG+KISKS GNVIDP++LV+KYGVD TR+FLMSEV
Sbjct:   45 GAEVEWVAKEPSYFFKLSEYEDKLLEYYEKNPEFIAPESRRNEVLGFVKQGLRDLSISRTTFKWGVPVPGDDDHVMYVWIDALANYISALGYPNMEKGSEFDKFWPGSLHVVGKDILRFHAIYWPAFLMAADLPVPRRLFAHGWWTKDGEKISKSLGNVIDPVELVEKYGVDQTRFFLMSEV 226
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BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Match: B8CCP4_THAPS (Methionine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCP4_THAPS)

HSP 1 Score: 319 bits (818), Expect = 3.080e-104
Identity = 143/182 (78.57%), Postives = 162/182 (89.01%), Query Frame = 1 
Query:    1 GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSGGLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPNRE--GEFDRFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKISKSTGNVIDPLDLVDKYGVDPTRYFLMSEV 540
            GA+VEWV+KE SYFFKLSE+Q  LL +YE +PDFIAPESR+NE +SFV GGLKDLSISRT+F WGVPVPGDDDHVMYVWIDAL NY+SALGYPN E  G FD+FWPA LHV+GKDILRFH+VYWPA LLAAG+  PKR+F HGWWTKDG+KISKS GNVIDP++L+D YGVDPTR+FLMSEV
Sbjct:  206 GAEVEWVKKEDSYFFKLSEYQDELLNYYEAHPDFIAPESRKNEVVSFVKGGLKDLSISRTTFDWGVPVPGDDDHVMYVWIDALTNYMSALGYPNTEPGGNFDKFWPASLHVVGKDILRFHAVYWPAFLLAAGIPLPKRIFAHGWWTKDGEKISKSLGNVIDPVELIDTYGVDPTRFFLMSEV 387
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BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Match: UPI00115ED8F3 (methionine--tRNA ligase n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115ED8F3)

HSP 1 Score: 311 bits (796), Expect = 1.090e-101
Identity = 136/180 (75.56%), Postives = 157/180 (87.22%), Query Frame = 1 
Query:    1 GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSGGLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPNREGEFDRFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKISKSTGNVIDPLDLVDKYGVDPTRYFLMSEV 540
            GA VEWVE EPSYFF+LS WQ+ LL+FYEKNPDFIAP SRRNE ISFV GGL DLS+SRTSF WGVPVPGDD H+MYVW+DAL NYI+A+GYP   GE+ R+WPADLH++GKDILRFH+VYWPA L+AAGLEPPKR+F HGWWT +GQKISKS GNVIDPL L+++YG+D  RYFL+ EV
Sbjct:  154 GAPVEWVE-EPSYFFRLSAWQERLLDFYEKNPDFIAPNSRRNEVISFVKGGLTDLSVSRTSFKWGVPVPGDDQHIMYVWLDALTNYITAVGYPETGGEYARYWPADLHMVGKDILRFHAVYWPAFLMAAGLEPPKRVFAHGWWTNEGQKISKSLGNVIDPLQLIERYGLDQVRYFLLREV 332
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BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Match: W7TRH3_9STRA (Methionine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRH3_9STRA)

HSP 1 Score: 314 bits (804), Expect = 1.250e-101
Identity = 142/184 (77.17%), Postives = 160/184 (86.96%), Query Frame = 1 
Query:    1 GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSGGLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPNREGE----FDRFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKISKSTGNVIDPLDLVDKYGVDPTRYFLMSEV 540
            GA+V WV KEPSYFFKLS WQ+PLLEFY  +P+FIAPESRRNE ISFV GGLKDLSISRT+F WGVPVP DDDHVMYVW+DAL NYISALGYP  +G     + RFWPADLHV+GKDILRFH+VYWPA L+AAGL PP+R+F HGWWTKD QKISKS GNVIDP+ LV+++G+DPTRYFLMSEV
Sbjct:  235 GAEVVWVVKEPSYFFKLSAWQEPLLEFYAAHPNFIAPESRRNEVISFVKGGLKDLSISRTTFKWGVPVPEDDDHVMYVWMDALTNYISALGYPEAKGSSPTPYQRFWPADLHVVGKDILRFHAVYWPAFLMAAGLAPPRRIFAHGWWTKDRQKISKSLGNVIDPVRLVEQFGLDPTRYFLMSEV 418
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BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Match: A0A7S2LM79_9STRA (Methionine--tRNA ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LM79_9STRA)

HSP 1 Score: 312 bits (800), Expect = 1.790e-101
Identity = 140/182 (76.92%), Postives = 162/182 (89.01%), Query Frame = 1 
Query:    1 GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSGGLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPNREG--EFDRFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKISKSTGNVIDPLDLVDKYGVDPTRYFLMSEV 540
            GA+VEWV KEPSYFFKLS+++  LLEFYE+NPDFIAPESR+NE +SFV GGLKDLS+SR SF WGVPVPGDDDHVMYVWIDALANYISALGYP+ +   ++  FWPA +H++GKDILRFH+VYWPA L+AAGL  PKRLF HGWWTKDG+KISKS GNVIDP++LV+KYGVD TR+FLMSEV
Sbjct:  217 GAEVEWVTKEPSYFFKLSDYEDKLLEFYEQNPDFIAPESRKNEVLSFVKGGLKDLSVSRMSFKWGVPVPGDDDHVMYVWIDALANYISALGYPSVDAGTKYSNFWPASVHMVGKDILRFHAVYWPAFLMAAGLPLPKRLFAHGWWTKDGEKISKSLGNVIDPVELVEKYGVDQTRFFLMSEV 398
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BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Match: A0A7S3PDL6_9STRA (Methionine--tRNA ligase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PDL6_9STRA)

HSP 1 Score: 305 bits (780), Expect = 1.800e-101
Identity = 140/182 (76.92%), Postives = 155/182 (85.16%), Query Frame = 1 
Query:    1 GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSGGLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPNR--EGEFDRFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKISKSTGNVIDPLDLVDKYGVDPTRYFLMSEV 540
            GADVEWV KE SYFFKLSE+Q  LL+FYE NPDFIAPESRRNE +SFV GGL+DLSISRTSF WGV VP DD HVMYVWIDAL NYISALGYPN   +  + +FWP  LHV+GKDILRFH+VYWPA+L+AA L  PKRLF HGWWTKDGQKISKS GNVIDP++L +KYGVD TR+FLMSEV
Sbjct:    3 GADVEWVSKEESYFFKLSEFQDKLLQFYEDNPDFIAPESRRNEVVSFVKGGLRDLSISRTSFQWGVKVPKDDGHVMYVWIDALTNYISALGYPNEGSDSNYSKFWPGALHVVGKDILRFHAVYWPAMLMAADLPLPKRLFAHGWWTKDGQKISKSLGNVIDPVELCEKYGVDQTRFFLMSEV 184
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BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Match: A0A512H3Z5_9PROT (Methionine--tRNA ligase n=1 Tax=Pararhodospirillum oryzae TaxID=478448 RepID=A0A512H3Z5_9PROT)

HSP 1 Score: 308 bits (789), Expect = 1.390e-100
Identity = 135/180 (75.00%), Postives = 157/180 (87.22%), Query Frame = 1 
Query:    1 GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSGGLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPNREGEFDRFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKISKSTGNVIDPLDLVDKYGVDPTRYFLMSEV 540
            GA VEWVE EPSYFF+LS WQ+PLLEFY  NPDFIAP+SRRNE I FV GGL DLSISRT+FSWG+PVP D+ H+MYVW+DAL NYI+A+GYP+ EGE+ R WPADLH++GKDILRFH+VYWPA L+AAGLEPPKR+F HGWWT +G+KISKS GNVIDPL LV+ YG+DP RYFL+ EV
Sbjct:  155 GAPVEWVE-EPSYFFRLSRWQEPLLEFYRANPDFIAPDSRRNEVIRFVEGGLTDLSISRTTFSWGIPVPDDEKHIMYVWMDALTNYITAVGYPDTEGEYARLWPADLHMVGKDILRFHTVYWPAFLMAAGLEPPKRVFAHGWWTNEGRKISKSVGNVIDPLALVETYGLDPVRYFLLREV 333
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BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Match: A0A7S4QLY2_9STRA (Methionine--tRNA ligase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QLY2_9STRA)

HSP 1 Score: 310 bits (795), Expect = 1.420e-100
Identity = 140/182 (76.92%), Postives = 158/182 (86.81%), Query Frame = 1 
Query:    1 GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSGGLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPNRE--GEFDRFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKISKSTGNVIDPLDLVDKYGVDPTRYFLMSEV 540
            GA+VEWV KEPSYFFKLSE++  LLE+YE NP FIAPESRRNE + FV  GL+DLSISRT+F WGVPVPGDDDHVMYVWIDALANYISALGYPN +    FD+FWP  LHV+GKDILRFH++YWPA L+AA L  PKRLF HGWWTKDG+KISKS GNVIDP++LV+KYGVD TR+FLMSEV
Sbjct:  225 GAEVEWVAKEPSYFFKLSEYEDKLLEYYEANPGFIAPESRRNEVLGFVKQGLRDLSISRTTFKWGVPVPGDDDHVMYVWIDALANYISALGYPNMDEGSSFDKFWPGSLHVVGKDILRFHAIYWPAFLMAADLPVPKRLFAHGWWTKDGEKISKSLGNVIDPVELVEKYGVDQTRFFLMSEV 406
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BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Match: A0A2D9EY49_9PROT (Methionine--tRNA ligase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D9EY49_9PROT)

HSP 1 Score: 308 bits (788), Expect = 1.810e-100
Identity = 133/180 (73.89%), Postives = 159/180 (88.33%), Query Frame = 1 
Query:    1 GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSGGLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPNREGEFDRFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKISKSTGNVIDPLDLVDKYGVDPTRYFLMSEV 540
            GA+VEWVE EPSYFFKLS W+  LL FY+ NPDFIAP+SRRNE  SFV GGL+DLSISRT+F+WGVPVPGD+DH+ YVW+DAL NYISALG+P+ +GE+ ++WPADLH++GKDILRFH+VYWPA L+AAGLEPPKR+F HGWWT +GQKISKS GNVIDP +LV+KYG+D  RYFL+ EV
Sbjct:  153 GAEVEWVE-EPSYFFKLSAWEDKLLAFYDANPDFIAPQSRRNEVTSFVKGGLQDLSISRTTFNWGVPVPGDEDHIFYVWLDALTNYISALGFPDEQGEYAKYWPADLHMVGKDILRFHAVYWPAFLMAAGLEPPKRVFAHGWWTNEGQKISKSLGNVIDPFELVEKYGLDQVRYFLLREV 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22045.5832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVJ9_9PHAE1.010e-11487.91Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2H077_9STRA6.240e-10578.02Methionine--tRNA ligase n=2 Tax=Helicotheca tamesi... [more]
B8CCP4_THAPS3.080e-10478.57Methionine--tRNA ligase n=1 Tax=Thalassiosira pseu... [more]
UPI00115ED8F31.090e-10175.56methionine--tRNA ligase n=1 Tax=Telmatospirillum s... [more]
W7TRH3_9STRA1.250e-10177.17Methionine--tRNA ligase n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2LM79_9STRA1.790e-10176.92Methionine--tRNA ligase n=1 Tax=Leptocylindrus dan... [more]
A0A7S3PDL6_9STRA1.800e-10176.92Methionine--tRNA ligase (Fragment) n=1 Tax=Amphora... [more]
A0A512H3Z5_9PROT1.390e-10075.00Methionine--tRNA ligase n=1 Tax=Pararhodospirillum... [more]
A0A7S4QLY2_9STRA1.420e-10076.92Methionine--tRNA ligase n=3 Tax=Ditylum brightwell... [more]
A0A2D9EY49_9PROT1.810e-10073.89Methionine--tRNA ligase n=1 Tax=Rhodospirillaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22045contigH-paniculata_contig22045:202..2574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.7
Seed ortholog evalue8.7e-85
Seed eggNOG ortholog35128.Thaps24901
Preferred nameMSM1
KEGG rclassRC00055,RC00523
KEGG koko:K01874
KEGG ReactionR03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031974,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGs2XB0G@2836,COG0143@1,KOG0436@2759
EC6.1.1.10
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons3
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22045.5832.1prot_H-paniculata_contig22045.5832.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22045 202..2574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929605.1195476-CDS-H-paniculata_contig22045:201..4391622929605.1195476-CDS-H-paniculata_contig22045:201..439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22045 202..439 -
1691480932.621326-CDS-H-paniculata_contig22045:201..4391691480932.621326-CDS-H-paniculata_contig22045:201..439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22045 202..439 -
1622929605.142619-CDS-H-paniculata_contig22045:1903..20291622929605.142619-CDS-H-paniculata_contig22045:1903..2029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22045 1904..2029 -
1691480932.6324847-CDS-H-paniculata_contig22045:1903..20291691480932.6324847-CDS-H-paniculata_contig22045:1903..2029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22045 1904..2029 -
1622929605.1639724-CDS-H-paniculata_contig22045:2398..25741622929605.1639724-CDS-H-paniculata_contig22045:2398..2574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22045 2399..2574 -
1691480932.6417506-CDS-H-paniculata_contig22045:2398..25741691480932.6417506-CDS-H-paniculata_contig22045:2398..2574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22045 2399..2574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22045.5832.1

>prot_H-paniculata_contig22045.5832.1 ID=prot_H-paniculata_contig22045.5832.1|Name=mRNA_H-paniculata_contig22045.5832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
GADVEWVEKEPSYFFKLSEWQKPLLEFYEKNPDFIAPESRRNEAISFVSG
GLKDLSISRTSFSWGVPVPGDDDHVMYVWIDALANYISALGYPNREGEFD
RFWPADLHVIGKDILRFHSVYWPALLLAAGLEPPKRLFVHGWWTKDGQKI
SKSTGNVIDPLDLVDKYGVDPTRYFLMSEV
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mRNA from alignment at H-paniculata_contig22045:202..2574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22045.5832.1 ID=mRNA_H-paniculata_contig22045.5832.1|Name=mRNA_H-paniculata_contig22045.5832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2373bp|location=Sequence derived from alignment at H-paniculata_contig22045:202..2574- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCCGACGTCGAGTGGGTGGAGAAAGAACCGTCATATTTCTTCAAGTT
GAGCGAATGGCAAAAGCCGCTGCTGGAATTTTACGAGAAAAATCCGGACT
TCATCGCGCCGGAGTCTAGGCGAAACGAGGCCATCTCCTTCGTGTCGGGG
GGATTGAAGGACTTGTCCATTTCTAGGTTAGCCTTCTAAGATGATGATGA
TGATGATGATGATGATGATGATGATGGGGCAAACGGTGGCGGCGGGGGCG
GGAGGGTGTCACTCGTGTGTGTGACGTGTGTAATAACTATGACATGGCTT
AGGAATGAACATGGACACACTTACAAACCGATTTGGCGACCAGTCAACCT
GTTTTGGTGATTTTGTCATGGTCTACTACGGCGATTGCCAGTAATGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATACTTTTTCATA
CCGTCATTTGTTTTTCTCTTTTTGCTTTCCCCTATCTCCGTCTTTTCTTT
TTGTTTTATCCTACTATTTTACTCCTTACATATGTTATCAACAAGGACCT
CGTTCTCGTGGGGTGTGCCAGTACCGGGGGATGATGATCACGTCATGTAC
GTCTGGATTGACGCTTTGGCCAACTACATATCGGCCTTGGGGTACCCAAA
CAGGGAAGGGGAATTCGACAGGTGAAGCGAGGGAAATATGTTTTTGAAGG
GGGGGGGGGGGGGGGGGGGGGAGGCGCGCATCGAGCTCCAATTATTCTCG
TACCACTGTGACTGTCGGAGCGGTCATTATTCTCCATTTTGTTCGCTCTC
GCTCATAGCTTGATAGATTGCTTCCGGCCGTGCTCGCGTACCGCTCCACG
TGACGGCGATGTTCGGCGCGGGGAATAAATTCGCTCTTGCCTTTCTGTGA
CAATCCGTGTAGGTGTTTCCGTGCGCCTCCCCCATCTCTTTTACTAAGGC
GACGGTTAGTTGAAGATTGAACGAGAGTCGTTTGTTTGGCAGAGCGTTTT
TTTCCCGACCGTGTTGTGTGCTGTACTGTACTGTGGTACTGACTGTCTAC
TCTTCATAATAGAATCTGATGTCGTCTGACTCTGCCTTTTTGTCACCGAT
AGCCATCTATTGTGGCCGGTTTTGCCCCATGTATTGTGTACTGGTGGATG
TCTTGTTGCTCGTCTAATAGTGGTTCGCCGTGGAGTTTTGGTATGAAAAT
TACCGGTGACATGATGGCACATTTTCGTGAGGTTGGACCTCACTAAACAG
CTTCCCGTGGCAACGGCGGGAGCCTCAACACACGCGATATTTTGGGGCTC
TTTACGTGAGAAAACTTCACACATTTTATCCTAGTTTTTATGTAGCGTGA
CGTTCGTAAAATTAAGATAAGAGGTGTGACGTTTTCTCACGCAAAGAGCC
CTGGTTATTTTGGCTCATTTCTTCATCTTGATGTTTCCACTACATTAGGC
TGTCATTATTCGCTGGCCTCGGCTGCCTCTCATTGAGCACTGTCACGTCA
GCCGGCAACAACCTTAAGGAGATACTTCGAGCTTGTTGAATAAAGCGTAA
AAACGCTGCAAAAGTTCACCCTTCGCTCGTTTAGTGTTGCAAGCTAACCT
TGCAGTGTTTTTGGAGCGTTGGTACAGAGCTGTAGAAAATAGATAGCTAT
TAAGGGAATCGTCAGCAGAGTAGGATCTTAGCTCTCCTCATTTTCGAGGT
ACAGCCATCAGTTGTTATCGACCTTCGTAAAACAGTGGTATATTCACATA
GTGAAGTATCCTACAGATAGCAATGCAGTACAGTGTTTCCCACCCTTGCT
CACCTTACTGTGAATCTGCCATTGCTCGTTACTTGAGGATTTCGCTAATT
TGAGCGTTGCCGCGCAGGAGCGTCCGAAACCTTTTCCAAATGTATACAGT
ATATGATGTAAATGACCTGTTGAAAACAACACCGCTAAGTTAGATTGCAA
CGCTGCACGGGCCAGACGTTAGCCTCTGCGGCATTTTTTTACATGTTGTT
CGATACATGCTGTGGGTCTGGTTCACCGTGGTTCGCCGTGGTTCACCGTG
TGCACACTGTCGAATGAAATGTGTACTGTAAAAGATTTTTGAGATCGCCC
GTTGTCTTTTCCCCGTCCTTCCTCGCGCACGCCAGGTTTTGGCCTGCAGA
TTTGCACGTGATCGGTAAGGATATACTTCGATTCCACTCCGTGTATTGGC
CAGCGCTCTTGCTTGCAGCAGGATTGGAACCTCCCAAGCGCCTGTTCGTG
CACGGCTGGTGGACCAAGGACGGGCAGAAGATATCTAAGAGCACGGGGAA
TGTCATCGATCCGCTTGACCTCGTGGATAAGTACGGGGTGGACCCGACAC
GGTACTTCCTCATGAGTGAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig22045:202..2574-

>mRNA_H-paniculata_contig22045.5832.1 ID=mRNA_H-paniculata_contig22045.5832.1|Name=mRNA_H-paniculata_contig22045.5832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig22045:202..2574- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCCGACGTCGAGTGGGTGGAGAAAGAACCGTCATATTTCTTCAAGTT
GAGCGAATGGCAAAAGCCGCTGCTGGAATTTTACGAGAAAAATCCGGACT
TCATCGCGCCGGAGTCTAGGCGAAACGAGGCCATCTCCTTCGTGTCGGGG
GGATTGAAGGACTTGTCCATTTCTAGGGGGCCGACGTCGAGTGGGTGGAG
AAAGAACCGTCATATTTCTTCAAGTTGAGCGAATGGCAAAAGCCGCTGCT
GGAATTTTACGAGAAAAATCCGGACTTCATCGCGCCGGAGTCTAGGCGAA
ACGAGGCCATCTCCTTCGTGTCGGGGGGATTGAAGGACTTGTCCATTTCT
AGGACCTCGTTCTCGTGGGGTGTGCCAGTACCGGGGGATGATGATCACGT
CATGTACGTCTGGATTGACGCTTTGGCCAACTACATATCGGCCTTGGGGT
ACCCAAACAGGGAAGGGGAATTCGACAGGACCTCGTTCTCGTGGGGTGTG
CCAGTACCGGGGGATGATGATCACGTCATGTACGTCTGGATTGACGCTTT
GGCCAACTACATATCGGCCTTGGGGTACCCAAACAGGGAAGGGGAATTCG
ACAGGTTTTGGCCTGCAGATTTGCACGTGATCGGTAAGGATATACTTCGA
TTCCACTCCGTGTATTGGCCAGCGCTCTTGCTTGCAGCAGGATTGGAACC
TCCCAAGCGCCTGTTCGTGCACGGCTGGTGGACCAAGGACGGGCAGAAGA
TATCTAAGAGCACGGGGAATGTCATCGATCCGCTTGACCTCGTGGATAAG
TACGGGGTGGACCCGACACGGTACTTCCTCATGAGTGAGGTAGTTTTGGC
CTGCAGATTTGCACGTGATCGGTAAGGATATACTTCGATTCCACTCCGTG
TATTGGCCAGCGCTCTTGCTTGCAGCAGGATTGGAACCTCCCAAGCGCCT
GTTCGTGCACGGCTGGTGGACCAAGGACGGGCAGAAGATATCTAAGAGCA
CGGGGAATGTCATCGATCCGCTTGACCTCGTGGATAAGTACGGGGTGGAC
CCGACACGGTACTTCCTCATGAGTGAGGTA
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