mRNA_H-paniculata_contig2204.5831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Match: A0A482SLQ7_9ARCH (GTP-binding protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLQ7_9ARCH) HSP 1 Score: 134 bits (337), Expect = 6.690e-35 Identity = 73/116 (62.93%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 1 LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKQRPAPGPSPDEKKNGPGGSAGEQAEAAKDNFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 348
LSD LV SNGIIS +LAGKLR+LDSTE+EQKRGITMHSSAI+LLY M K G+ + K++FLINL+D PGHIDFSSDVSTA RLCD AL+VVDVLE
Sbjct: 36 LSDSLVSSNGIISPRLAGKLRFLDSTEEEQKRGITMHSSAIALLYRMEEK-----------------GAEAAKEIGTKEDFLINLVDCPGHIDFSSDVSTAARLCDGALIVVDVLE 134
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Match: A0A836CNE8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNE8_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.560e-34 Identity = 85/156 (54.49%), Postives = 91/156 (58.33%), Query Frame = 1
Query: 1 LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKQRPAP------------------------GPSPDEKKNGPGGSAGEQ----------------AEAAKDNFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 348
LSDGLVCSNGIISSKLAGKLRYLDST DEQ+RGITM SSAISLLY + K + A G + D + G A EQ A A +LINLIDSPGHIDFSSDVSTATRLCD LVVVDVLE
Sbjct: 113 LSDGLVCSNGIISSKLAGKLRYLDSTADEQQRGITMRSSAISLLYELQLKGKRAAAAHAXXXXXXXXXXXXXXAVQNGTGAAADSEAAAAGTPASEQTXXXXXXXXXXXXXXXATPAPGPYLINLIDSPGHIDFSSDVSTATRLCDTGLVVVDVLE 268
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Match: A0A6A4ZWQ2_9STRA (Tr-type G domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZWQ2_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.240e-32 Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 1
Query: 1 LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKQRPAPGPSPDEKKNGPGGSAGEQAEAAKDNFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 348
LSD LV SNGIIS KLAGK+R+LD+TE+EQ RGITM SSAISL+Y P +P E+K G S + +LINL+DSPGH+DFS DVSTA RLCD ALV++DV+E
Sbjct: 36 LSDSLVSSNGIISDKLAGKVRFLDNTEEEQTRGITMKSSAISLMYEGPL--------TPSERKAGGLDSTNDDVTVP---YLINLVDSPGHVDFSFDVSTAVRLCDGALVLIDVIE 140
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Match: A0A428T4S2_9HYPO (Ribosome assembly protein 1 n=1 Tax=Fusarium sp. AF-4 TaxID=1325735 RepID=A0A428T4S2_9HYPO) HSP 1 Score: 119 bits (299), Expect = 8.210e-32 Identity = 64/116 (55.17%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 1 LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKQRPAPGPSPDEKKNGPGGSAGEQAEAAKDNFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 348
L+D L+ +NGIIS KLAGK+RYLDS DEQ RGITM SSAISL ++M +++ AP P++K+ +L+NLIDSPGHIDFSS+VSTA+RLCD A+V+VD +E
Sbjct: 35 LTDALLATNGIISPKLAGKIRYLDSRPDEQTRGITMESSAISLYFAM--RRKTAPDAEPEDKE-----------------YLVNLIDSPGHIDFSSEVSTASRLCDGAVVLVDAVE 131
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Match: W7U9X5_9STRA (Elongation factor ef-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9X5_9STRA) HSP 1 Score: 127 bits (320), Expect = 9.140e-32 Identity = 74/131 (56.49%), Postives = 91/131 (69.47%), Query Frame = 1
Query: 1 LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKQRP----------APGPSPDEKKNGPGGS-----AGEQAEAAKDNFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 348
LSD LVCSNGIIS KLAGKLR+LDS+E+EQKRGITM +SAISLL++ +++ P AP SP GG+ + E ++LINLIDSPGHIDFSSDVSTATRL D A+++VD+LE
Sbjct: 36 LSDSLVCSNGIISPKLAGKLRFLDSSEEEQKRGITMKASAISLLHTKKTRRFPIVDLSTPVTNAPRESPGAIAVSQGGTDVGSLSAELPYPVSQDYLINLIDSPGHIDFSSDVSTATRLSDGAIIIVDILE 166
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Match: A0A7D8YN68_9HELO (Ribosome assembly protein 1 n=5 Tax=Lachnellula TaxID=47830 RepID=A0A7D8YN68_9HELO) HSP 1 Score: 127 bits (319), Expect = 1.240e-31 Identity = 70/116 (60.34%), Postives = 84/116 (72.41%), Query Frame = 1
Query: 1 LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKQRPAPGPSPDEKKNGPGGSAGEQAEAAKDNFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 348
LSD L+ +NGIIS KLAGK+RYLDS DEQ RGITM SSAISL +SM +R APG +P+EK+ +LINLIDSPGHIDFSS+VSTA+RLCD A+V+VD +E
Sbjct: 35 LSDALIATNGIISPKLAGKIRYLDSRPDEQTRGITMESSAISLFFSM--LRRSAPGATPEEKE-----------------YLINLIDSPGHIDFSSEVSTASRLCDGAVVLVDAVE 131
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Match: A0A8H4V0V2_9HYPO (Tr-type G domain-containing protein n=1 Tax=Fusarium sp. NRRL 66182 TaxID=2692428 RepID=A0A8H4V0V2_9HYPO) HSP 1 Score: 121 bits (304), Expect = 1.340e-31 Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 1
Query: 1 LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKQRPAPGPSPDEKKNGPGGSAGEQAEAAKDNFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 348
L+D L+ +NGIIS KLAGK+RYLDS DEQ RGITM SSAISL +SM +R AP +P+ K+ +LINLIDSPGHIDFSS+VSTA+RLCD ALV+VD +E
Sbjct: 7 LTDSLIATNGIISPKLAGKIRYLDSRPDEQLRGITMESSAISLYFSM--LRRSAPDAAPETKE-----------------YLINLIDSPGHIDFSSEVSTASRLCDGALVLVDAVE 103
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Match: A0A4D9CXS8_9STRA (Tr-type G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXS8_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.370e-31 Identity = 74/131 (56.49%), Postives = 90/131 (68.70%), Query Frame = 1
Query: 1 LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKQRP----------APGPSPDEKKNGPGGS-----AGEQAEAAKDNFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 348
LSD LVCSNGIIS KLAGKLR+LDS+E+EQKRGITM +SAISLL++ ++ P AP SP GG+ + E ++LINLIDSPGHIDFSSDVSTATRL D A+++VD+LE
Sbjct: 36 LSDSLVCSNGIISPKLAGKLRFLDSSEEEQKRGITMKASAISLLHTKKIRRFPIVDLSTPVTSAPRESPGAIAVSQGGTDVGSLSAELPYPVSQDYLINLIDSPGHIDFSSDVSTATRLSDGAIIIVDILE 166
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Match: A0A1V9ZMG1_9STRA (Elongation factor Tu GTP-binding domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZMG1_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.830e-31 Identity = 71/116 (61.21%), Postives = 82/116 (70.69%), Query Frame = 1
Query: 1 LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKQRPAPGPSPDEKKNGPGGSAGEQAEAAKDNFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 348
LSD LV SNGIIS +LAGK+RYLD+TE+EQ RGITM SSAISLLY P +P EKK G S E +LINL+DSPGH+DFS DVSTA RLCD ALV++DV+E
Sbjct: 33 LSDSLVSSNGIISDRLAGKIRYLDNTEEEQLRGITMKSSAISLLYEGPL--------TPQEKK---GRSDDETVP-----YLINLVDSPGHVDFSFDVSTAVRLCDGALVLIDVIE 132
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Match: B8NM15_ASPFN (GTP-binding protein lepa, putative n=1 Tax=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) TaxID=332952 RepID=B8NM15_ASPFN) HSP 1 Score: 122 bits (307), Expect = 2.420e-31 Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 1
Query: 1 LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKQRPAPGPSPDEKKNGPGGSAGEQAEAAKDNFLINLIDSPGHIDFSSDVSTATRLCDCALVVVDVLE 348
L+D L+ +NGIIS KLAGK+RYLDS DEQ RGITM SSAISL +SM +RPAP +P K+ +LINLIDSPGHIDFSS+VSTA+RLCD A+V+VD +E
Sbjct: 35 LTDSLIATNGIISPKLAGKIRYLDSRPDEQLRGITMESSAISLFFSM--MRRPAPDAAPVAKE-----------------YLINLIDSPGHIDFSSEVSTASRLCDGAIVLVDAVE 131 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2204.5831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2204.5831.1 >prot_H-paniculata_contig2204.5831.1 ID=prot_H-paniculata_contig2204.5831.1|Name=mRNA_H-paniculata_contig2204.5831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp LSDGLVCSNGIISSKLAGKLRYLDSTEDEQKRGITMHSSAISLLYSMPSKback to top mRNA from alignment at H-paniculata_contig2204:12197..13015- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2204.5831.1 ID=mRNA_H-paniculata_contig2204.5831.1|Name=mRNA_H-paniculata_contig2204.5831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=819bp|location=Sequence derived from alignment at H-paniculata_contig2204:12197..13015- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2204:12197..13015- >mRNA_H-paniculata_contig2204.5831.1 ID=mRNA_H-paniculata_contig2204.5831.1|Name=mRNA_H-paniculata_contig2204.5831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig2204:12197..13015- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |