mRNA_H-paniculata_contig2201.5823.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2201.5823.1
Unique NamemRNA_H-paniculata_contig2201.5823.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2201.5823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2201contigH-paniculata_contig2201:7119..11750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size381
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2201.5823.1prot_H-paniculata_contig2201.5823.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2201 7119..11750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929604.1382864-CDS-H-paniculata_contig2201:7118..72801622929604.1382864-CDS-H-paniculata_contig2201:7118..7280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2201 7119..7280 -
1691480932.2387135-CDS-H-paniculata_contig2201:7118..72801691480932.2387135-CDS-H-paniculata_contig2201:7118..7280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2201 7119..7280 -
1622929604.1592326-CDS-H-paniculata_contig2201:9690..97891622929604.1592326-CDS-H-paniculata_contig2201:9690..9789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2201 9691..9789 -
1691480932.2529893-CDS-H-paniculata_contig2201:9690..97891691480932.2529893-CDS-H-paniculata_contig2201:9690..9789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2201 9691..9789 -
1622929604.1766741-CDS-H-paniculata_contig2201:10464..105221622929604.1766741-CDS-H-paniculata_contig2201:10464..10522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2201 10465..10522 -
1691480932.2688313-CDS-H-paniculata_contig2201:10464..105221691480932.2688313-CDS-H-paniculata_contig2201:10464..10522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2201 10465..10522 -
1622929604.2017379-CDS-H-paniculata_contig2201:11688..117501622929604.2017379-CDS-H-paniculata_contig2201:11688..11750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2201 11689..11750 -
1691480932.2768252-CDS-H-paniculata_contig2201:11688..117501691480932.2768252-CDS-H-paniculata_contig2201:11688..11750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2201 11689..11750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2201.5823.1

>prot_H-paniculata_contig2201.5823.1 ID=prot_H-paniculata_contig2201.5823.1|Name=mRNA_H-paniculata_contig2201.5823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
SPDLPQVAVSEGQGLGTASKGEDAGTLNSSHDGGDGNVGWTGAWRRVVSE
AAFHLPLPKPSEEEEEYLGRVWKFELEKWLVKPATQAPRVLPPCEIDIGA
QKGGKVTIAERGSGRLKSKSRCIQPPY
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mRNA from alignment at H-paniculata_contig2201:7119..11750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2201.5823.1 ID=mRNA_H-paniculata_contig2201.5823.1|Name=mRNA_H-paniculata_contig2201.5823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4632bp|location=Sequence derived from alignment at H-paniculata_contig2201:7119..11750- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCTGATCTACCGCAGGTGGCGGTTTCCGAGGGACAAGGGCTGGGAAC
AGCTTCAAAAGGGTGGGTTGTGTTCAAATGACTCGTGAAGTGGTGCTTGC
ACTGCAGATTGGATTCCAGAGAGGGTTCATTTGTAGTTGAGAGAGATATC
GCAGCATTATATGGGTGATGGTTGACCACAGCATTTGCAATCGCCGAAAG
GTGTGGAAAGTTTAGGATCCTATAGAATAGTGGTGTAGAAGGCTTGATCA
TATTTCCGAATCCCAGAGAATCTCGAAACAAACCCTCGAGAAAAAAGCGG
GTCAAGTCAATCCCTTCGTCCCGCACACTGTCCACATGTAAGTGTTGACA
GGGCGTAGTCTCTTGGGCATCGGTCGCATACGGGGTAGATAGACACGAAA
CGATCCTTGAACTCAGAGACGAGGGGTTCGAGGCCAGGGTTAGCACAGAC
AGGTCCACACGGGGCAGCATGATGCAGTTGGACTGTCTAATTTACTGTAA
AACATTTGGCGGTTTCGTCATTGCCGACTGGAATGACAGCACACGGTAGT
CTCGCTGCAATGTATTGACAGACAGGGAAGCTTTCATAGTTTTGTGGTAC
CTCGTGTTCGTCCCGCCGTACCGCCCGACTTCCTTTCTTGGGGCCGCTGA
ACGCCCACCCGCGGGCGCTACATTGTGGTGTCAGCTCCCTACTAACCTCA
ACGGGCTAGTAGTCCAGTAGGTATTGCTGTTCTGTATCTCCCGTGCCCAA
GTGGCGACAGTAATACCGGAAGATTGGGCATGCTCCTCGTGTAATTTGCA
TGTCGCTAGCTGTTTCTCATTTTATATCTTTGGGACGGTTTTCCCAAAGC
GCCCATTGTGAGAGCTGTGTATCGAACGTTCGAAACGATATTCAAATGTT
GGTGTGAGCGAAGCCAGCCACCCATACGAAGAGTCAGGCGAGCGCTTTAG
CGCGAGGCAAACGACCGCCCCTGGCTGAGGAGGGGGCGTCGCTGGAGGCG
CAGCCGATGGCAGAAAGACTGGGCACTTGTGTTTTTTAGGTGCTGGGTAA
TGAGGACGATATTATGTGTATATTCGCCGAGTAATAACCCTTTTTGATAC
GCAAGCCCTGCCCGTTCTGGTAGCTGGATGCGTTACAGTGTATATATATA
CTCTTTCTCTCGTCGCATTCCTCCCCAGTTGCCTCCTTTCCGATGCCCCT
CGCCTCCTTTTGCCCTACATCTATCCAGAGAGGACGCTGGGACTCTTAAC
AGCAGTCATGATGGTGGCGATGGCAATGTTGGATGGGTACGTTTTGGTTT
CTTGTTTTGCATTGTTTAGGTATATATATATATATATATAGTGGTGGTTG
ATTTTTGTCCTCGGTGTTTTAAGCAGCGTCGCTGATCGTCTTGTGTTCGC
GTCGCATGTCGTTGTCTTCCCCTAGAGGCGCTGAAACGTGTTTTGAACAC
TGCGTGATCCGTCTACCATCGGCCAATAATGTCTATTGTGTTACCAATGG
CGATGCGTAATATCAGAAGTGTCCTTTTTGTTGGGTGTTTTTTAACCCCC
GGAAGGCTAAGGCAGAAACCTCTATCCGATGCTTCCATCAGAAGTGGCCT
TTCGCTCGCCCCTGCCGGAACCATCCTGGTAGGAGGACGTGTACCTCAGC
AGTATCTCACATGTATTGTTGAACGTCTGCACTTGTCACGAGAAAGATGG
AAACTTTTTATTTTTTGTTTTTTTGTCGTCTCACAATATACTCGAATTAG
GTGCCGCCGTTTGCGTGGAGGCGATATGCTTGTGCTGCGGTGCGTGGCCA
CCTGGAAACGCCTTGTGTCAACTATTTTCAACCAGTCATACAGATCGCCA
TGTCGTCGTAGCCTTGCATACTGTTGAATTTTCCTCAGCAGTGCTGACGA
TATCTCTGATTGACCACTGCTTACTTGTGGCGTTGCCCATGGTGTCTATT
CTCCTGGCAAGACTGGGGCATGGCGACGAGTAGTGTCAGAGGCTGCCTTT
CACCTGCCACTCCCGAAGCCCTCGGAGGAGGAGGAGGAGTACCTCGGAAG
GGTCTGGAAGGTACTATTTTAACGTATGAGTTATTGTTAGGAAAGTGGGC
AAGGTTTTCTTTTGTAGTCGTCCTACATATACTCGAATCTGGTGTCCTCG
TCTGTGTTGAGTCCGTGTGGTTGCGCTGGGGTACGTGACTACCCGAAAAC
GCCTTGTGTAGTCTACGGCAGGATGAAGGTATATCTTCGCTCACCCAGGG
GGGAGGAGAGGGCTGTTTTATCACATGTATGTATAAATAGTGAGCACGTA
CGATGTTGGGTTCTGCTGCGCCTTGAGGGCGTGTAGGGCTTCTCCTAGGT
AATAGTAATATTAGTAGCAGTACGTACCAGTAGCAGTTGGTGGAGATGTG
ATGAGTGGTCTCAGATTTTGTGTATTTTTCTGTCGAGCGTATGCGGGGTA
GGAAGTGGTAATACCCGTCGCTTCTTGTGTATGTGTTAGATAGACGATCA
TGTGCTTCTTTCTGAGGCGGCCCAGGTTGTCTTGTACCGTTTTTCCCGGC
GTGTGTAATCTTGACGGAGAATAAGGGTATTCACACCATACCTCTTTCAG
TTGTTTCTAGTTTCGGGATGCAAATCTCTCTCTCTCGATATATATATTGA
AATTAATTTGTCTTGATTCCGTGGAGTCAGATTTGTACAGGCTTGCTTTG
ATTGACCTCACATGTTTCTCATTTTGCATTCAGGGTTATTATAGTTATCA
TGAGAACACGAAACAGAGAGCAAGATAATCACACAGCTGCGTTATCCGTA
TTTACGAGATGGAAGAAGTGGGCCCCAGATAACGAATGATGAAAATCCAG
CACATGTTCGTGTCAGCAGCATCACGCGCTGTGAGTAGAAATATGCGGCT
TATTTCGAAAAGCGGAAGCAATTGACCGTATCAATCGTACAATCGGCAGT
ATGACAATCGGCGTTTCCTTGAGCGCCGCTGTTGCAAAGCCCCAAAAAGG
AAAGGGTCGTTGGGGCGGACTGATTGGTGGTTTATTTATGACGGTGCGAC
AGCTTATGCAGCACTCACTGGTGACAGACAGTCCTCTTTTGGTAGGGTTT
GATGACAAAGCACCGTGTTTTTCTTTGGTGCATCGATTGGTTCGACAGTC
GCCGTAGCTTCCGCTTTGACCGTAGTGTCGATCGATGTCAATGTGGAACG
AGTGCATGACGATTAAGTGGACAATATCGCCTGTATAGAGAAAGTGACAA
CGGCAAGACGACGTTCGACGCGGTGGTGTCGTTCAGTCTGTCGTGACGAT
ACCTGATGTGCGATATTGCTGTTTGTGTGTCTGTGGGATGTTCTATTTTC
GGAGGTGCTTGCAATTTTCTCTGGTGCCACCGTCACAGGACAGGACCTCC
TGTTGACGTGATACAAGCAATAGCCGATCTACCACATGAAACAAGTGGAG
GGTTGTCCTAACCCACCGAGGATACTACTTACACGTGTTGCAAATCGCAG
CATTCTCGGGACGTAACGGCTTAGCTCGTACCCACGTGCACTTCACACGC
TTGCTCTATTGCTATCTCTAACCCCTGTGCTCCGCACCTTCCAAACAGGC
GCGCTTGATTCTCTGTCGATGTTCAGTGATTACGGCACCCATTGCTGACC
CGCCCAGGCGTCGAGCACCCTTATATTTTATGTTGGTATTTACCCGTGGT
CGCACCCCACGTCGCTGCAAGGACTTGATTCACTCATGTACCCTTTTCTT
GCAAACGGCCACGGCGCGATCTGCCCAGACAGGTTGTATCTTGCTGTGCG
CTCAGTATGGTCACAAAGGGTTTGACGATGAATGTGTAATTACTAGGGTG
CATGGACATTTTAATTTATTTTTGGTGGTTTTCGCTGTGCTGTTGTGGCT
TCCTCTTTTCCTGGCCGCTTTCAATGCATTGGTGAAGATCCGAACATCGT
CCTTGTGGCATAGACGCTACGACACACGTGGTTGAAGGAGTGGTTGTTTC
GAGCCTACAGTGTTAACGGGGACGAGTCACAACTTGTAAGACCCGAACAG
CTGATGATTTGTTTTTGTTAGTTGGAGCAATGTGTACAGTATTCAGCGAA
CAATCGGGCATGGATCTTGCGCTGTACTCGTTGGATGGATTGTTTAATCT
CAATATGTCCCCCCACATGAGATCAAACGGCCTTAACATTCAACGAGCGA
CGATGGAACGCAAATTTCATGGCGCTCTTGGTCTCGATCGCACTGCCGAT
CGGGTATTTCACGTCATCCAGTGATCGTTCAGCCGTTGGGTCGCATCTTG
AGAATTGGTGTATACGGTTGTAACGTTTTCTTTGCGGCACTCTTGCCTGA
CAACTGACTGTCGTTTTCTTTCCCGCGCCCCCGGCCGCCCTCCAATACTG
TCTCGATTCGAACTTATACATTGTGGTTCCTCGTACGGTCGGTTCGATCA
CACGTTCGCCGAAACGGCAGTTTGAGCTTGAGAAGTGGTTGGTCAAGCCG
GCGACTCAAGCCCCGAGAGTTCTTCCCCCTTGTGAGATTGATATCGGAGC
ACAGAAGGGAGGTAAAGTGACCATTGCCGAGCGGGGGTCGGGCAGATTGA
AGTCCAAGTCCCGCTGCATCCAGCCTCCATAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2201:7119..11750-

>mRNA_H-paniculata_contig2201.5823.1 ID=mRNA_H-paniculata_contig2201.5823.1|Name=mRNA_H-paniculata_contig2201.5823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig2201:7119..11750- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCTGATCTACCGCAGGTGGCGGTTTCCGAGGGACAAGGGCTGGGAAC
AGCTTCAAAAGGTCGCCTGATCTACCGCAGGTGGCGGTTTCCGAGGGACA
AGGGCTGGGAACAGCTTCAAAAGGAGAGGACGCTGGGACTCTTAACAGCA
GTCATGATGGTGGCGATGGCAATGTTGGATGGAGAGGACGCTGGGACTCT
TAACAGCAGTCATGATGGTGGCGATGGCAATGTTGGATGGACTGGGGCAT
GGCGACGAGTAGTGTCAGAGGCTGCCTTTCACCTGCCACTCCCGAAGCCC
TCGGAGGAGGAGGAGGAGTACCTCGGAAGGGTCTGGAAGACTGGGGCATG
GCGACGAGTAGTGTCAGAGGCTGCCTTTCACCTGCCACTCCCGAAGCCCT
CGGAGGAGGAGGAGGAGTACCTCGGAAGGGTCTGGAAGTTTGAGCTTGAG
AAGTGGTTGGTCAAGCCGGCGACTCAAGCCCCGAGAGTTCTTCCCCCTTG
TGAGATTGATATCGGAGCACAGAAGGGAGGTAAAGTGACCATTGCCGAGC
GGGGGTCGGGCAGATTGAAGTCCAAGTCCCGCTGCATCCAGCCTCCATAC
TTTGAGCTTGAGAAGTGGTTGGTCAAGCCGGCGACTCAAGCCCCGAGAGT
TCTTCCCCCTTGTGAGATTGATATCGGAGCACAGAAGGGAGGTAAAGTGA
CCATTGCCGAGCGGGGGTCGGGCAGATTGAAGTCCAAGTCCCGCTGCATC
CAGCCTCCATAC
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