mRNA_H-paniculata_contig220.5817.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig220.5817.1
Unique NamemRNA_H-paniculata_contig220.5817.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 214 bits (544), Expect = 4.940e-60
Identity = 135/403 (33.50%), Postives = 214/403 (53.10%), Query Frame = 1
Query:   10 EPKSAAEALQGPEAGKRRAVMEEEWGALVENGTWESEDPGRLPAGRIRTKC--IFKQKLKEDGSVACYKVRLVAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYLNAPGDEELFVKLPSE----------------------------------------TPTLTNPCLYFSRDEGEDTDIRVAVYVDDLVIAGRR-EKVDEFKHKISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIREVLKRYGFDECRGVPTPVEGKGK-ISAPESADKPPEPKPLGAVLGNSTEYRSMVGSLMYTSTGT*PDIAYTVHQAAHRMEDPCREDFSICKRIFRYLSTIPDFGITFGGKSNGHGLEGFVDADWVEDVEDRTSATGYVFKL 1086
            EP + +EAL GP A +    M++E  +L E+  WE  +   LP  R    C  +FK K   DGS+  +K RLVAQGFS   G D+ ET +PV R  ++  V +L+V+  ++L  MDV AA+LN   ++E+++K P                                          T T ++PC+Y   ++G      VA++VDD+++AG+  EK+ + K  I++RF++KD+G L  +LG++V ++  +  + I Q  Y   ++K+YG + C+ V TPV+   K +SA E ++           L N  E++S VGSL+Y S+ T PDI + V+  A    +P  E ++  KRIFRYL    ++G+ +   +N   + GF DADW  D+ DR S +GY F++
Sbjct:  145 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSE-----------LFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQI 528          
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 215 bits (548), Expect = 9.440e-59
Identity = 136/403 (33.75%), Postives = 214/403 (53.10%), Query Frame = 1
Query:   10 EPKSAAEALQGPEAGKRRAVMEEEWGALVENGTWESEDPGRLPAGRIRTKC--IFKQKLKEDGSVACYKVRLVAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYLNAPGDEELFVKLPSE----------------------------------------TPTLTNPCLYFSRDEGEDTDIRVAVYVDDLVIAGRR-EKVDEFKHKISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIREVLKRYGFDECRGVPTPVEGKGK-ISAPESADKPPEPKPLGAVLGNSTEYRSMVGSLMYTSTGT*PDIAYTVHQAAHRMEDPCREDFSICKRIFRYLSTIPDFGITFGGKSNGHGLEGFVDADWVEDVEDRTSATGYVFKL 1086
            EP + +EAL GP A +    M++E  +L E+  WE  +   LP  R    C  +FK K   DGS+  +K RLVAQGFS   G D+ ET +PV R   +  V +L+V+  ++L  MDV AA+LN   ++E+++K P                                          T T ++PC+Y   ++G+     VA++VDD+++AG+  EK+ + K  I++RF++KD+G L  +LG++V ++  +  + I Q  Y   ++K+YG + C+ V TPV+   K +SA E ++           L N  EY+S VGSL+Y S+ T PDI + V+  A    +P  E ++  KRIFRYL    ++G+ +   +N   + GF DADW  D+ DR S +GY F++
Sbjct:  759 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSE-----------LFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQI 1142          
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 213 bits (541), Expect = 8.650e-58
Identity = 134/399 (33.58%), Postives = 212/399 (53.13%), Query Frame = 1
Query:   10 EPKSAAEALQGPEAGKRRAVMEEEWGALVENGTWESEDPGRLPAGRIRTKCIFKQKLKEDGSVACYKVRLVAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYLNAPGDEELFVKLPSE----------------------------------------TPTLTNPCLYFSRDEGEDTDIRVAVYVDDLVIAGRREKVDEFKHKISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIREVLKRYGFDECRGVPTPVEGKGKISAPESADKPPEPKPLGAVLGNSTEYRSMVGSLMYTSTGT*PDIAYTVHQAAHRMEDPCREDFSICKRIFRYLSTIPDFGITFGGKSNGHGLEGFVDADWVEDVEDRTSATGYVFKL 1086
            EP+S  EA+Q P+  + +  +E+E   L ++ T++  +P       + +K +F+ K   +G +  YK RLVAQGFS + G DF +T APVA+++++ I+ +LA  HD ++  MDV  AYLNA  +EE+F+K P                                          + +L + C+++  ++ +   + +A+ VDD  IAG    V  FK +IS+RF M DLG +  +LGIEVRRDR  RT+++SQ  YI  ++ R+  ++ + + TP+E    +S  +    P E + +      +  YR  +GSLMY + GT PDIA+ V   +  M++P R  +   KR+ RYL +  +  +T+G   NG  +EGF DADW    E R S  GYVF +
Sbjct:  959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPEN-TNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGAILSIRQCPSTPREFEDM-----RNVPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNPGRAHWEAAKRVLRYLKSTREKWLTYGLTRNG--VEGFSDADWGSS-EHRHSICGYVFLI 1348          
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 210 bits (535), Expect = 5.410e-57
Identity = 136/399 (34.09%), Postives = 210/399 (52.63%), Query Frame = 1
Query:   10 EPKSAAEALQGPEAGKRRAVMEEEWGALVENGTWESEDPGRLPAGRIRTKCIFKQKLKEDGSVACYKVRLVAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYLNAPGDEELFVKLPSE----------------------------------------TPTLTNPCLYFSRDEGEDTDIRVAVYVDDLVIAGRREKVDEFKHKISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIREVLKRYGFDECRGVPTPVEGKGKISAPESADKPPEPKPLGAVLGNSTEYRSMVGSLMYTSTGT*PDIAYTVHQAAHRMEDPCREDFSICKRIFRYLSTIPDFGITFGGKSNGHGLEGFVDADWVEDVEDRTSATGYVFKL 1086
            +P S  EA+Q  E  K +  + +E   L  +GT+   +P +     + +K +F+ K   +G +  YK RLVAQGF+ V G DF ET APVA+++++ ++ +LA  +D EL  MDV  AYLN   +EE++++ P                                          T +  + C+++ R+E +   + +A+ VDD  IAG +  V  FK +IS RF M DLG +  +LGIEVRRDR  RT+++SQ  YI  +L R+   + + + TP++    +S  +    P + + +      +  YR  +GSLMY + GT PDIAY V   +  M++P R  +   KR+FRYL+   +  +TFG  ++G  +EGF DADW    E R S +GYVF L
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKN-TNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDM-----KNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTFGETTDG--VEGFSDADW-GSAEHRHSISGYVFLL 1310          
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Match: A0A401H6Z2_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H6Z2_9APHY)

HSP 1 Score: 206 bits (524), Expect = 1.500e-55
Identity = 135/399 (33.83%), Postives = 208/399 (52.13%), Query Frame = 1
Query:   10 EPKSAAEALQGPEAGKRRAVMEEEWGALVENGTWESEDPGRLPAGRIRTKCIFKQKLKEDGSVACYKVRLVAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYLNAPGDEELFV----------------------------------KLPSE------TPTLTNPCLYFSRDEGEDTDIRVAVYVDDLVIAGRREKVDEFKHKISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIREVLKRYGFDECRGVPTPVEGKGKISAPESADKPPEPKPLGAVLGNSTEYRSMVGSLMYTSTGT*PDIAYTVHQAAHRMEDPCREDFSICKRIFRYLSTIPDFGITFGGKSNGHGLEGFVDADWVEDVEDRTSATGYVFKL 1086
            +P S  EA+Q  E  K    + +E   L  +GT+   +P +     + +K +F+ K   +G +  YK RLVAQGF+ V G DF ET APVA+++++ ++ +LA  +D EL  MDV   YLN   +EE+++                                  K+  E      T +  + C+++ R+E +   + +A+ VDD  IAG +  V  FK +IS  F M DLG +  +LGIEVRRDR  RT+++SQC YI  +L R+   + + + TP++    +S  +    P + + +      +  YR  +GSLMY + GT PDIAY V   +  M++P R  +   KR+FRYL+   +  +TFG  ++G  +EGF DADW    E R S + YVF L
Sbjct:  744 DPASLNEAMQSTEWPKWTEAIAKEMQNLDSHGTYTLVEPPKN-TNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILTLAAHYDWELHQMDVKGVYLNGDLEEEIYMWQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCIFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISMHFEMSDLGEMHWILGIEVRRDRDARTLSLSQCAYIDMILARFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDM-----KNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMKNPGRPHWEAAKRVFRYLAGTRERWLTFGETTDG--VEGFSDADW-GSAEHRHSISRYVFLL 1133          
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 199 bits (507), Expect = 1.630e-55
Identity = 139/403 (34.49%), Postives = 207/403 (51.36%), Query Frame = 1
Query:   10 EPKSAAEALQGPEAGKRRAVMEEEWGALVENGTWE--SEDPGRLPAGRIRTKCIFKQKLKEDGSVACYKVRLVAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYLNAPGDEELFVKLPSETPT---------LTNPC--------------------LYFSRDE---------GEDTDIR-VAVYVDDLVIAGRREKVDEFKH---KISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIREVLKRYGFDECRGVPTPVEGKGKISAPESADKPPEPKPLGAVLGNSTEYRSMVGSLMYTSTGT*PDIAYTVHQAAHRMEDPCREDFSICKRIFRYLSTIPDFGITFGGKSNGHGLEGFVDADWVEDVEDRTSATGYVFKL 1086
            EP++  EA    E  +  A +E+E G + + GTWE   + PG   A  + +  +FK K    G++A YK RLVAQGFS + G D+ +T APVA++S++ I+ +LA   D EL  MDV  AYLN   +EE+F+K P   PT         L  P                     + F+R           G + +I  VAV VDDL IA     VDE  H    +  +F M DLG +  +LG+E++RDR  RTI++ Q  YI  +L R+   + + + T ++    ++  +S   P +   +  +L     YR  +GSLMY + GT PD++Y V   +  M++P    +   KR+ RYL    +  +T+GG  N +G+EGF DADW    + R S +GYVF +
Sbjct:   29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPG---ANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVAVSVDDLAIAAN--SVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNIL-----YREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGG-DNANGMEGFSDADWGSS-DHRRSISGYVFLI 419          
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Match: A0A445HPU2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HPU2_GLYSO)

HSP 1 Score: 206 bits (523), Expect = 2.000e-55
Identity = 132/402 (32.84%), Postives = 211/402 (52.49%), Query Frame = 1
Query:   10 EPKSAAEALQGPEAGKRRAVMEEEWGALVENGTWESED--PGRLPAGRIRTKCIFKQKLKEDGSVACYKVRLVAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYLNAPGDEELFVKLPS----------------------ETP------------------TLTNPCLYFSRDEGEDTDIRVAVYVDDLVIAGR-REKVDEFKHKISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIREVLKRYGFDECRGVPTPVEGKGKISAPESADKPPEPKPLGAVLGNSTEYRSMVGSLMYTSTGT*PDIAYTVHQAAHRMEDPCREDFSICKRIFRYLSTIPDFGITFGGKSNGHGLEGFVDADWVEDVEDRTSATGYVFKL 1086
            +PK+ +EA+   +    +  ++ E  ++++N TW+  D  PG  P G    K IF++K+K DG+V  YK RLV QGF   EG DFF+T APVAR+ST+ ++ +LA  H++ +  MDV  A+LN   DEE+++K P                       + P                     + CLY S+ +     + + +YVDD++I G  +++VDE K  +S +F MKD+G    +LGI+++R   N  I+ISQ  YI ++L+++ F +C  V TP++   K+             P   V  +  EY   +GSLMY    T PDIAY V + +    +P    +    R+F+YL    D+G+T+ G  +   +EG+ DA W+ ++ED +S +G+VF L
Sbjct:  537 DPKTFSEAMASRDVVFWKEAIQSEMDSIMQNNTWKLVDLPPGCKPLG---CKMIFRRKMKVDGTVDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLMIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGNENKVCKLMKSLYGLKQAPKQWHQKFDEVVLSSGFVINQADKCLY-SKFDTHGKGVIICLYVDDMLIFGTDQDQVDETKAFLSSKFDMKDMGEADVILGIKIKRG--NNGISISQSHYIEKILEKFNFKDCSPVSTPIDPNLKLL------------PNKGVAVSQLEYSRAIGSLMYAMISTRPDIAYAVAKLSRFTSNPSSHHWQAMNRVFKYLKGTIDYGLTYTGFPSV--IEGYSDASWITNMEDYSSTSGWVFLL 918          
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Match: W8BNV5_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BNV5_CERCA)

HSP 1 Score: 200 bits (509), Expect = 2.670e-55
Identity = 127/410 (30.98%), Postives = 211/410 (51.46%), Query Frame = 1
Query:   10 EPKSAAEALQGPEAGKRRAVMEEEWGALVENGTWESEDPGRLPAGR--IRTKCIFKQKLKEDGSVACYKVRLVAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYLNAPGDEELFVKLPSE------------------------------------------------TPTLTNPCLYFSRDEGEDTDIRVAVYVDDLVIA-GRREKVDEFKHKISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIREVLKRYGFDECRGVPTPVEGKGKISAPESADKPPEPKPLGAVLGNSTEYRSMVGSLMYTSTGT*PDIAYTVHQAAHRMEDPCREDFSICKRIFRYLSTIPDFGITFGGKSNGHGLEGFVDADWVEDVEDRTSATGYVFKL 1086
            +P+++A+AL  PEA + +  M +E+  L+ N TWE  D    P G+  + +K   + K  ++G++   K RLVA+GF+   G D+ ET APVAR++T+ ++ +++ E  +E+  +D  +AYLN   + E+++KLP++                                                + + ++PCLY   +    T I +A+YVDDL++A   ++K+   K +++  F MKDLG +   LGIE  +     TIT+ Q  Y+ E+L R+  ++C+ V TP     K+   E   K  E K    +  +   Y+++VGSLMY +  T PDIA+ V   +    +   + +   KR+ RYL   P+ GI+F  ++    LEGF DADW  +++DR S TG+ F L
Sbjct:   89 DPETSAQALTSPEASEWKKAMLKEYRTLIANNTWEIVD---RPIGKKIVESKWALRTKYNQNGNIEKRKARLVAKGFTQRAGIDYSETFAPVARLNTIRLLMAISAEMGLEIHQLDFVSAYLNGTIETEIYMKLPTDLFSILDEEEASQYTEDKVCLLKKAIYGLKQSGRLWYQKLHTKLSNMGMSASKSDPCLYTYNNNN--TIILIAIYVDDLIVACNDKQKLSRIKDELASSFEMKDLGPIKLCLGIEFNQCLKTNTITMCQSRYVAEILNRFQMNDCKPVSTPANTSIKLCK-EMCPKTEEEK----LSASKLPYQNLVGSLMYLAVSTRPDIAHIVSVLSQFNTNYGNQHWVAAKRVLRYLKGTPNLGISFT-RTRNFSLEGFADADWGSNIDDRRSYTGFAFTL 487          
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Match: A0A535EWW2_9CHLR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535EWW2_9CHLR)

HSP 1 Score: 197 bits (500), Expect = 4.590e-55
Identity = 136/395 (34.43%), Postives = 196/395 (49.62%), Query Frame = 1
Query:   10 EPKSAAEALQGPEAGKRRAVMEEEWGALVENGTWESEDPGRLPAGR--IRTKCIFKQKLKEDGSVACYKVRLVAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYLNAPGDEELFVKLPSETPTL-------TNPCLY---------------FSRDEG-----------EDTDIRVAVYVDDLVIAG-RREKVDEFKHKISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIREVLKRYGFDECRGVPTPVEGKGKISAPESADKPPEPKPLGAVLGNSTEYRSMVGSLMYTSTGT*PDIAYTVHQAAHRMEDPCREDFSICKRIFRYLSTIPDFGITFGGKSNGHGLEGFVDADWVEDVEDRTSATGYVFKL 1086
            EPKS  EA       K    M +E+ +L+ENGTW   DP   P GR  +R + I+K K   +G +  YK R V +GF   +G D+ ET A V +  +   +F+LA  HD+ELE MDV  A+L    +EE++V+ P E            N  LY               F +  G            +  + +AVYVDDL+I G  +E++ + K  +++ F+M DLG     LG+ +RRDRPNRTI +SQ  Y+  +LK +   E + V TP++     +A E  +  PE +           Y+S VGSLMY   GT PDIA+ V   +    +P    +   KRIFRYL +     + + G      L G+ DADW  D + R S +GY+F +
Sbjct:  104 EPKSLEEAKNDYIWDKWLKAMVDEYDSLMENGTWTLVDP---PPGRRILRGRWIYKIKRGPNGEILRYKARWVVRGFEQEQGLDYNETFASVVKPMSYKALFALAAAHDLELEQMDVKTAFLYGDIEEEIYVERPPEVGEKHSGKVCRLNKALYGLKQSPRVWYKTLAAFLKKSGFEPLSPDFSVFHNNGMFIAVYVDDLLIVGPSKEEIQKVKDTLNKEFQMTDLGPCQYYLGMRIRRDRPNRTIYLSQQGYLERILKDFDMWESKPVATPLDNSRFETAEEGYECKPEDR---------KRYQSAVGSLMYAMLGTRPDIAFAVSVVSRYASNPTEAHWRAVKRIFRYLRSTITLELVYTGDFKP--LLGYSDADWAGDHDTRRSTSGYIFNI 484          
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 202 bits (514), Expect = 3.420e-54
Identity = 141/401 (35.16%), Postives = 202/401 (50.37%), Query Frame = 1
Query:   13 PKSAAEALQGPEAGKRRAVMEEEWGALVENGTWESEDPGRLPAG--RIRTKCIFKQKLKEDGSVACYKVRLVAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYLNAPGDEELFVKLPSETP-------------------------TL-------------TNPCLYFSRDEGEDTDIRVAVYVDDLVIAGR-REKVDEFKHKISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIREVLKRYGFDECRGVPTPVEGKGKISAPESADKPPEPKPLGAVL--GNSTEYRSMVGSLMYTSTGT*PDIAYTVHQAAHRMEDPCREDFSICKRIFRYLSTIPDFGITFGGKSNGHGLE--GFVDADWVEDVEDRTSATGYVF 1080
            P +  EA   PE    RA +EEE   L +N  +E+     +P+G   I +K + + K  ++G +  YK+R+VA+GF+   G D+ +  APVA + ++ I+ +LA  +D+EL+ MDV AAYLN   DEEL++  P                             TL             +  CLY  RD+       V VYVDDL++A   R  +DE K K++ +F+M+DLG  S +LGI +RRDRP R I +SQ  YI  VL RYG  +C+   TP+    K     SAD P +   L ++   G S  Y S++GS+MY   GT PDIAY V        +P R  + + KR  RYL    D  + F G      ++  G+ DADW  D +   S +G+VF
Sbjct:  983 PSTLREAFSTPEGEHWRAALEEELQNLRDNCVYETVP---IPSGVKPITSKPVLRVKFDKNGGIERYKIRIVARGFTQKPGIDYQDVFAPVANLESVRIILALAARYDLELDQMDVSAAYLNGELDEELYLMPPDGVAIEPGHCWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVK----PSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRFDGSDVAGDMDFHGYSDADWSGDRDTSRSTSGFVF 1375          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig220.5817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9HZ03_PARCT4.940e-6033.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT9.440e-5933.75Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A401GQU1_9APHY8.650e-5833.58Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A401GN13_9APHY5.410e-5734.09Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A401H6Z2_9APHY1.500e-5533.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y9ZVS1_9AGAM1.630e-5534.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A445HPU2_GLYSO2.000e-5532.84Retrovirus-related Pol polyprotein from transposon... [more]
W8BNV5_CERCA2.670e-5530.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A535EWW2_9CHLR4.590e-5534.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VT18_TRAPU3.420e-5435.16Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig220contigH-paniculata_contig220:1739..2988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score149.1
Seed ortholog evalue3e-33
Seed eggNOG ortholog6334.EFV57947
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons3
Model size1086
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig220.5817.1prot_H-paniculata_contig220.5817.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig220 1967..2919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.140685-UTR-H-paniculata_contig220:1738..19661622929603.140685-UTR-H-paniculata_contig220:1738..1966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig220 1739..1966 -
1691480931.7324471-UTR-H-paniculata_contig220:1738..19661691480931.7324471-UTR-H-paniculata_contig220:1738..1966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig220 1739..1966 -
1622929603.220411-UTR-H-paniculata_contig220:2919..29881622929603.220411-UTR-H-paniculata_contig220:2919..2988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig220 2920..2988 -
1691480931.7808-UTR-H-paniculata_contig220:2919..29881691480931.7808-UTR-H-paniculata_contig220:2919..2988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig220 2920..2988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.1590207-CDS-H-paniculata_contig220:1966..20301622929603.1590207-CDS-H-paniculata_contig220:1966..2030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig220 1967..2030 -
1691480931.7415938-CDS-H-paniculata_contig220:1966..20301691480931.7415938-CDS-H-paniculata_contig220:1966..2030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig220 1967..2030 -
1622929603.1875348-CDS-H-paniculata_contig220:2075..24561622929603.1875348-CDS-H-paniculata_contig220:2075..2456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig220 2076..2456 -
1691480931.7534845-CDS-H-paniculata_contig220:2075..24561691480931.7534845-CDS-H-paniculata_contig220:2075..2456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig220 2076..2456 -
1622929603.2040932-CDS-H-paniculata_contig220:2575..29191622929603.2040932-CDS-H-paniculata_contig220:2575..2919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig220 2576..2919 -
1691480931.7646637-CDS-H-paniculata_contig220:2575..29191691480931.7646637-CDS-H-paniculata_contig220:2575..2919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig220 2576..2919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig220.5817.1

>prot_H-paniculata_contig220.5817.1 ID=prot_H-paniculata_contig220.5817.1|Name=mRNA_H-paniculata_contig220.5817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
MEEEWGALVENGTWESEDPGRLPAGRIRTKCIFKQKLKEDGSVACYKVRL
VAQGFSLVEGEDFFETSAPVARMSTLPIVFSLAVEHDVELEGMDVDAAYL
NAPGDEELFVKLPSETPTLTNPCLYFSRDEGEDTDIRVAVYVDDLVIAGR
REKVDEFKHKISQRFRMKDLGSLSRMLGIEVRRDRPNRTITISQCDYIRE
VLKRYGFDECRGVPTPVEGKGKISAPESADKPPEPKPLGAVLGNSTEYRS
MVGSLMYTSTGT*
back to top

mRNA from alignment at H-paniculata_contig220:1739..2988-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig220.5817.1 ID=mRNA_H-paniculata_contig220.5817.1|Name=mRNA_H-paniculata_contig220.5817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1250bp|location=Sequence derived from alignment at H-paniculata_contig220:1739..2988- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAATGGGGAGCCGAAATCCGCGGCAGAAGCATTACAAGGTCCAGAGGC GGGAAAACGGCGCGCGGTAATGGAGGAAGAATGGGGGGCGTTGGTGGAAA ATGGGACATGGGAAAGCGAAGACCCGGGGAGGTTACCGGCAGGGCGGATT CGTACGAAGTGTATTTTCAAGCAGAAACTGAAGGAGGACGGCAGCGTGGC ATGCTATAAAGTGCGACTGGTGGCGCAAGGCTTTTCGCTGGTGGAGGGTG AAGATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACCT ATCGTTTTTAGCCTGGCAGTCGAACATGATGTTGAATTAGAAGGCATGGA TGTAGATGCGGCGTATTTAAACGCTCCGGGAGATGAAGAGCTGTTTGTTA AGCTACCCTCCGAGTTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCGC TGCCTGCGTAAAAGCCTGCACGGCCTCAAGAAGAGCGGCCGAAACTGAAT ACACAGCCTTGACAATTGTCTTGTTGAGATAGAACTCCAACGTTAACCAA CCCATGCTTGTACTTCTCTCGTGACGAGGGGGAAGATACAGACATTCGCG TGGCCGTCTATGTTGACGACCTGGTCATCGCTGGCCGTCGTGAGAAAGTG GACGAGTTCAAGCATAAAATAAGTCAGCGTTTTAGGATGAAAGACTTGGG CTCCCTCTCGCGCATGTTGGGAATAGAAGTACGACGTGATCGCCCTAATC GTACCATAACCATCTCGCAGTGTGACTACATCCGCGAGGTACTAAAAAGA TACGGTTTTGACGAGTGTCGAGGCGTTCCCACCCCTGTAGAGGGAAAAGG GAAGATTTCGGCACCCGAGTCAGCCGACAAGCCCCCCGAACCGAAACCAC TTGGAGCTGTACTGTCGGACATAGGTGCGGGAGTACAAGAAAGCAGCAGT AGAAGAAGTGGCAATTCAACTGAATACAGAAGCATGGTAGGATCACTCAT GTATACCTCGACAGGAACTTGACCTGATATAGCATACACGGTACACCAAG CAGCACATCGTATGGAGGACCCATGTCGAGAAGACTTCAGTATATGCAAG CGCATTTTTCGTTATCTCAGTACTATACCTGATTTCGGCATTACGTTCGG CGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGG TGGAAGACGTCGAGGACCGAACGTCCGCAACAGGATATGTTTTCAAGCTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig220:1739..2988-

>mRNA_H-paniculata_contig220.5817.1 ID=mRNA_H-paniculata_contig220.5817.1|Name=mRNA_H-paniculata_contig220.5817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig220:1739..2988- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGGGGGCGTTGGTGGAAAATGGGACATGGGAAAGCGA
AGACCCGGGGAGGTTACCGGCAGGGCGGATTCGTACGAAGTGTATTTTCA
AGCAGAAACTGAAGGAGGACGGCAGCGTGGCATGCTATAAAGTGCGACTG
GTGGCGCAAGGCTTTTCGCTGGTGGAGGGTGAAGATTTCTTTGAAACCAG
TGCCCCCGTAGCTCGCATGTCGACGTTACCTATCGTTTTTAGCCTGGCAG
TCGAACATGATGTTGAATTAGAAGGCATGGATGTAGATGCGGCGTATTTA
AACGCTCCGGGAGATGAAGAGCTGTTTGTTAAGCTACCCTCCGAATGGAG
GAAGAATGGGGGGCGTTGGTGGAAAATGGGACATGGGAAAGCGAAGACCC
GGGGAGGTTACCGGCAGGGCGGATTCGTACGAAGTGTATTTTCAAGCAGA
AACTGAAGGAGGACGGCAGCGTGGCATGCTATAAAGTGCGACTGGTGGCG
CAAGGCTTTTCGCTGGTGGAGGGTGAAGATTTCTTTGAAACCAGTGCCCC
CGTAGCTCGCATGTCGACGTTACCTATCGTTTTTAGCCTGGCAGTCGAAC
ATGATGTTGAATTAGAAGGCATGGATGTAGATGCGGCGTATTTAAACGCT
CCGGGAGATGAAGAGCTGTTTGTTAAGCTACCCTCCGAAACTCCAACGTT
AACCAACCCATGCTTGTACTTCTCTCGTGACGAGGGGGAAGATACAGACA
TTCGCGTGGCCGTCTATGTTGACGACCTGGTCATCGCTGGCCGTCGTGAG
AAAGTGGACGAGTTCAAGCATAAAATAAGTCAGCGTTTTAGGATGAAAGA
CTTGGGCTCCCTCTCGCGCATGTTGGGAATAGAAGTACGACGTGATCGCC
CTAATCGTACCATAACCATCTCGCAGTGTGACTACATCCGCGAGGTACTA
AAAAGATACGGTTTTGACGAGTGTCGAGGCGTTCCCACCCCTGTAGAGGG
AAAAGGGAAGATTTCGGCACCCGAGTCAGCCGACAAGCCCCCCGAACCGA
AACCACTTGGAGCTGTACTAACTCCAACGTTAACCAACCCATGCTTGTAC
TTCTCTCGTGACGAGGGGGAAGATACAGACATTCGCGTGGCCGTCTATGT
TGACGACCTGGTCATCGCTGGCCGTCGTGAGAAAGTGGACGAGTTCAAGC
ATAAAATAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCCCTCTCGCGC
ATGTTGGGAATAGAAGTACGACGTGATCGCCCTAATCGTACCATAACCAT
CTCGCAGTGTGACTACATCCGCGAGGTACTAAAAAGATACGGTTTTGACG
AGTGTCGAGGCGTTCCCACCCCTGTAGAGGGAAAAGGGAAGATTTCGGCA
CCCGAGTCAGCCGACAAGCCCCCCGAACCGAAACCACTTGGAGCTGTACT
TGGCAATTCAACTGAATACAGAAGCATGGTAGGATCACTCATGTATACCT
CGACAGGAACTTGATGGCAATTCAACTGAATACAGAAGCATGGTAGGATC
ACTCATGTATACCTCGACAGGAACTTGA
back to top