mRNA_H-paniculata_contig22.5815.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22.5815.1
Unique NamemRNA_H-paniculata_contig22.5815.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Match: D7G8F8_ECTSI (RPAP3_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8F8_ECTSI)

HSP 1 Score: 419 bits (1077), Expect = 1.410e-130
Identity = 359/844 (42.54%), Postives = 455/844 (53.91%), Query Frame = 2
Query:   62 GAAAFRTQNQIRQNAQDMQDYLTDLGKWEKSIKKKDKQLSRKAAASSA----QRPVADIAKNDGPPIRQHCGTVAITSGPPP--IKP--KAKGGSNGCHNDQLQGDSPTASGSTNNPATNGTLRDSGKTTSHGTNEKSVSAAEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPPDNSDSDTDGEEFSPTAAAACRPRRNPATTSHLSLGERLPVSRPAP-----AP-SAGTTAMVQQDLEKKERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGKAESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSKQIRKDMSKMLETLKAVVRRAPKHRVKVESEPLPAPKPR--TPPGAQSSLVKADRLSSISSLASVFPVDTKMIAVDPSSIPRTTTPTVTPATIRTNGGGVSFEEKRDTVCPGAPSGSGLSNDDGEHVAS---------RTTVKELPDDGRSKSEVVAPL-RSPSS--QKAEEVSIASSSLARMAADDRQPVDAATARAVKAGATVEQKTPVIPTDSDASATAVSPSASSPRPPQASTNPRVSAVAGSEVATAEPTAGTRAPSAVDRGDVGPAEAASLEVTKKNKSSTDADAPGAETGGKIGAK---------GENDLLSMAVAVLPARTKQANEVKRTKKRTRSTRLSASTN-------SASTAAISPDAAAKLLPTTGYQLEHMWRSAATSSDPDARVELLRTLPPSSIVKIFRHTPLEVELLEEILGHLGAALLPRRPATAMRWLKSLSKASRFGMAVSLMGEK-GQRSVRELMKQIEASS---IKREELEALKKQFS 2449
            GAAAFR Q+QIR+NAQDMQ+YLTDL  WEKSIKKKDKQLSRKA + S+    +R + D      PPIR    TV ++SGP P   +P  K    S GC ND   G       + N     G   DSGK  S      S+SAA HT+D GY KWAKFD+DAALR VD E+   E+   D   S                PR  PAT    S    L   RP P     AP S   ++   +DLEK+ERE+GN  F +GDFEGA+K YTRC+GM+SKS++AFSNRAMA LKL+EFGKAESD +AAL++D  HVKSLQ+RA ARNALGKHRAAL DLQ AAEIDPTSKQ+RKD+SK LETLK VVRRAPK  V+VES PLPAPKPR  + PG                     P++          +P    PTV  A +       S     DT    AP  S L     +   +         RT V+ELPD+  +      P  R+P++     + V + ++S+A +AA + +  DA      ++   V++   V P                     A   P+++ V GS   T  P A T  PS  +  DV  A      V+    S T    P A +   +GAK         GE++ LS     +    K+       + RT    L A T        S    A    A A  LPTTGYQ E MWR   T   P+ R+ELLR +PPS+I KIFR TP+EVELL  +L  LG A LPRRPATA+RWLKSLSKASRF M V+L+GE+ G+ + RE+++++EA+S   +  ++++ L+KQFS
Sbjct:   16 GAAAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLSRKAMSESSSSGNRRAIPDTGT---PPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDGADGRPHINVNAANGGGATG---DSGKAKS------SMSAAGHTYDKGYGKWAKFDIDAALRSVDQEE---EEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSCSRGL--RRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQQRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPKTHVRVESFPLPAPKPRGYSQPGT--------------------PIE--------EGVP----PTVANAAVSATNHNASVTGDEDTA---APYSSVLQESTDKRATNEATVYSYQARTIVEELPDEAEATLATPIPTPRAPTNAVSSVQSVPLPTASIA-VAAQNERGGDAVP----RSYGRVDRDITVDP---------------------AGDTPKIATVEGSLTKTTTPGAAT--PS--EATDVAAAHTVRPAVSTDLASKT---GPPALSLVDVGAKAVTEQASAGGEDNNLSRGTHPV----KEEATCPSLEARTEDKELCAPTQTPQQGRPSTPAPACRATAHALQLPTTGYQFESMWRG--TDGSPEGRLELLRAVPPSTIAKIFRRTPIEVELLGGVLQELGKAFLPRRPATALRWLKSLSKASRFSMTVALLGEEDGRAAAREVLRRLEAASPTKVDPKDVDVLRKQFS 768          
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Match: K3WL17_GLOUD (RPAP3_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL17_GLOUD)

HSP 1 Score: 168 bits (426), Expect = 6.430e-41
Identity = 128/360 (35.56%), Postives = 170/360 (47.22%), Query Frame = 2
Query:   59 SGAAA--FRTQNQIRQNAQDMQDYLTDLGKWEKSIKKKDKQLSRKAAASSAQRPVADIAKNDGPPIRQHCGTVAITSGPPPIKPKAKGGSNGCHNDQLQGDSPTASGSTNNPATNGTLRDSGKTTSHGTNEKSVSA----AEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPPDNSDSDTDGEEFSPTAAAACRPRRNPATTSHLSLGERLPVSRPAPAPSAGTTAMVQQDLEKKERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGKAESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSKQIRKDMSKMLETLKAVVRRAPK 1120
            SGA+A   + Q+QIR NA  +QDY +DL  WEKSI +++                        P  R    T A                       ++GD  +A                        N+K  +A    A HT+D GY KWAKFDVDAALRE D +                       T+               LS  + + V    PA  A  T   +++LE   RE GN  + +GD+  AIKCYTRC+G +  +AV  SNRAMA+LK REFGKAE DCN AL++D  H+KSL RR  ARN+LGKHR AL D + AAE+DP S+QI+  ++   E ++  ++RAPK
Sbjct:    4 SGASASTLQVQHQIRANAAQLQDYFSDLYSWEKSINEEEXXXXXXXXXXXX-----XXXXXRAPRRRVQQATDATP---------------------VEGDGDSA------------------------NDKGAAAKADPAGHTYDKGYSKWAKFDVDAALREADEDS----------------------TSXXXXXXXXXXXXXXXLS-SKAVVVEETEPAAKASATTKSREELE---REDGNAHYQRGDYVAAIKCYTRCLGYNPHNAVVLSNRAMAHLKNREFGKAEEDCNLALKIDPSHLKSLSRRGTARNSLGKHRLALLDFERAAELDPKSRQIQTQIASTRELIRTAIKRAPK 287          
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Match: A0A5D6XFC9_9STRA (RPAP3_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFC9_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.120e-39
Identity = 102/240 (42.50%), Postives = 131/240 (54.58%), Query Frame = 2
Query:  461 AEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPPDNSDSDTDGEEFSPTAAAACRPRRNPATTSHLSLGERLPVSRPAPAPSAGTTAMVQQDLEKKERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGKAESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSKQIRKDMSKMLETLKAVVRRAPKHRVK-----VESEPLPAPKP 1165
            A HT+D GY KWAKFDV+AAL+E D  ++G   K              S  AA++ R                                      E+ ERE GN  + +GDF  AIKCYTRC+G  S++AV  SNRAMAYLK REF KAE DCN A+Q+D  H+KSL RRA ARNALGKHR AL D + AA +DP S+Q++  ++   E L+A ++RAP  R K     ++ EP    +P
Sbjct:   71 AAHTYDRGYYKWAKFDVEAALKEAD--EDGHVTK--------------SAVAASSSR--------------------------------------EEIEREEGNAHYKRGDFVAAIKCYTRCLGYDSRNAVVLSNRAMAYLKNREFAKAEDDCNLAIQVDPSHLKSLSRRATARNALGKHRLALLDFERAAALDPKSRQLQNQIASTKELLRAAIKRAPTQRGKLLIEVIDDEPKEVKRP 256          
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Match: A0A081B1U1_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A081B1U1_PHYPR)

HSP 1 Score: 159 bits (402), Expect = 8.300e-39
Identity = 98/227 (43.17%), Postives = 131/227 (57.71%), Query Frame = 2
Query:  440 NEKSVSAAEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPPDNSDSDTDGEEFSPTAAAACRPRRNPATTSHLSLGERLPVSRPAPAPSAGTTAMVQQDLEKKERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGKAESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSKQIRKDMSKMLETLKAVVRRAPK 1120
            NEK + A  HT+D GY +W KFDVDAAL+E D E  G++++    S S           A+   P R  AT++                P+A TT   +++LEK+E   GN  + +GD+  AIK YTRC+G + ++AV  SNRAMAYLK REF  AE DC  AL+ D  HVKS  RR  ARNALGKHR AL D   AA +DP S+QI+  +      ++  ++R+PK
Sbjct:   81 NEKKLDA--HTYDKGYKRWEKFDVDAALKEAD-EDEGNKRQNKQQSAS---------VQASGTGPSRVTATSN---------------IPAASTTTKTREELEKEE---GNAHYKRGDYVAAIKSYTRCLGYNPQNAVVLSNRAMAYLKNREFANAEDDCTLALKSDPAHVKSYSRRGTARNALGKHRLALLDFHRAAMLDPKSRQIQTQLQSTRNVIRTAIKRSPK 277          
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Match: A0A8K1FBG6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBG6_PYTOL)

HSP 1 Score: 161 bits (408), Expect = 9.580e-39
Identity = 94/221 (42.53%), Postives = 127/221 (57.47%), Query Frame = 2
Query:  458 AAEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPPDNSDSDTDGEEFSPTAAAACRPRRNPATTSHLSLGERLPVSRPAPAPSAGTTAMVQQDLEKKERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGKAESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSKQIRKDMSKMLETLKAVVRRAPK 1120
            A  HT+D GY KW KFDVDAAL+E DG+ +  ++                         +    TTS       LP  +    P  G+  +  +  E  ERE GN  + +GD+  AIK YTRC+G +S++A+  SNRAMAYLK RE+ KAE+DC  AL++DS HVKS  RR  ARNALGKHR AL D + A E+DP SKQ+   ++   E+++  ++RAPK
Sbjct:   94 ADAHTYDKGYKKWDKFDVDAALQEADGDHSAEKQSA-----------------------QAETTTTS-------LPTKKVVAKPKIGS--VPTKSREDIEREEGNEHYKRGDYVAAIKSYTRCLGFNSQNAIVLSNRAMAYLKNREYKKAENDCTLALKIDSAHVKSYSRRGTARNALGKHRLALLDFERARELDPKSKQLLTQIASTKESMRTAIKRAPK 282          
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Match: W2RGZ7_PHYPN (RPAP3_C domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2RGZ7_PHYPN)

HSP 1 Score: 159 bits (402), Expect = 7.890e-38
Identity = 98/227 (43.17%), Postives = 131/227 (57.71%), Query Frame = 2
Query:  440 NEKSVSAAEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPPDNSDSDTDGEEFSPTAAAACRPRRNPATTSHLSLGERLPVSRPAPAPSAGTTAMVQQDLEKKERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGKAESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSKQIRKDMSKMLETLKAVVRRAPK 1120
            NEK + A  HT+D GY +W KFDVDAAL+E D E  G++++    S S           A+   P R  AT++                P+A TT   +++LEK+E   GN  + +GD+  AIK YTRC+G + ++AV  SNRAMAYLK REF  AE DC  AL+ D  HVKS  RR  ARNALGKHR AL D   AA +DP S+QI+  +      ++  ++R+PK
Sbjct:   81 NEKKLDA--HTYDKGYKRWEKFDVDAALKEAD-EDEGNKRQNKQQSAS---------VQASGTGPSRVTATSN---------------IPAASTTTKTREELEKEE---GNAHYKRGDYVAAIKSYTRCLGYNPQNAVVLSNRAMAYLKNREFANAEDDCTLALKSDPAHVKSYSRRGTARNALGKHRLALLDFHRAAMLDPKSRQIQTQLQSTRNVIRTAIKRSPK 277          
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Match: A0A0P1AW29_PLAHL (Uncharacterized conserved protein, contains LRR repeats n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AW29_PLAHL)

HSP 1 Score: 156 bits (394), Expect = 5.950e-37
Identity = 117/346 (33.82%), Postives = 164/346 (47.40%), Query Frame = 2
Query:   83 QNQIRQNAQDMQDYLTDLGKWEKSIKKKDKQLSRKAAASSAQRPVADIAKNDGPPIRQHCGTVAITSGPPPIKPKAKGGSNGCHNDQLQGDSPTASGSTNNPATNGTLRDSGKTTSHGTNEKSVSAAEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPPDNSDSDTDGEEFSPTAAAACRPRRNPATTSHLSLGERLPVSRPAPAPSAGTTAMVQQDLEKKERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGKAESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSKQIRKDMSKMLETLKAVVRRAPK 1120
            Q+QIR NA  +QDY +DL  WEK I +++  L+RK  + +                     T +  +  PP       G+N C +                                  + K++ A  HTHD GY +W KFDVDAAL++ D E N                          C    +P  T +LS      V+     P++ T +  +++LE   RE GN+ + +GDF  AIK YTRC+G + ++ V  SNRAMAYLK RE+  AE DC  AL+ D  HVKS  RR  ARN+LGKHR AL D Q AA +DP S+QI+  +    E ++  ++R+PK
Sbjct:   13 QHQIRSNASRLQDYYSDLYAWEKRIGQEE--LARKKTSKT---------------------TSSSATALPPRSVNIISGNNRCKDVAAD------------------------------HMKAMDA--HTHDKGYKRWEKFDVDAALKKADKEDNPQ-----------------------LCN--ESPIATQNLSCQ----VAATKKTPASLTASKTREELE---REDGNLHYKQGDFVAAIKSYTRCLGYNPQNVVVLSNRAMAYLKNREYTNAEDDCTLALETDLTHVKSYMRRGTARNSLGKHRLALLDFQQAATLDPKSRQIQTQLQSTRELIRMAIKRSPK 271          
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Match: A0A2R5G9G5_9STRA (Peptidyl-prolyl cis-trans isomerase FKBP4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9G5_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.330e-36
Identity = 103/230 (44.78%), Postives = 137/230 (59.57%), Query Frame = 2
Query:  458 AAEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPP-DNSDSDTDGEEFSPTAAAACRPRRNPATT--SHLSLGERLPVS-RPAPAPSAGTTAMVQQDLEKKERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGKAESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSKQIRKDMSKMLETLKAVVRRAPKHRVKV 1135
            AA HT+D GY KW  FDVD AL EVDG+   +   P  D   +D   +   P A  +  P   PA+   S LS  +    S R    P A       +D+   ERERGN  + KGDF  A+K YTR IG + +SAVA+SNRAMA LKL++F  A++DC +AL+LD  HVKSL RRA ARNALG+HRAA  D     E++P ++Q   ++++  E +++  RRAP+ RV V
Sbjct:   27 AASHTYDQGYKKWESFDVDRALAEVDGQATTTGVSPDQDPKAADAPIQASFPGAKLSSGPV-TPASIVPSDLSFPQTTSASSRHGAFPDADPVEAKPRDVT--ERERGNDYYKKGDFAQAVKFYTRAIGFNPRSAVAYSNRAMALLKLKDFTAADADCCSALELDPTHVKSLTRRATARNALGRHRAAFVDFALVRELEPQNRQAIAELARTRELVRSSARRAPRTRVSV 253          
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Match: A0A329RPX3_9STRA (RPAP3_C domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RPX3_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.660e-36
Identity = 96/228 (42.11%), Postives = 128/228 (56.14%), Query Frame = 2
Query:  440 NEKSVSAAEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPPDNSDSDTDGEEFSPTAAAACRPRRNPATTSHLSLGER-LPVSRPAPAPSAGTTAMVQQDLEKKERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGKAESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSKQIRKDMSKMLETLKAVVRRAPK 1120
            NEK +   EHT+D GY +W KFDVDAAL+E D E    +K                          +  A+ S  S G   L V+  + A ++ TT    +  E+ E+E GN  + +GD+  AIK YTRC+G + ++AV  SNRAMAYLK REF  AE DC  AL+ D  HVKS  RR  ARN+LGKHR AL D Q AA +DP S+QI+  +    E ++  ++R+PK
Sbjct:  102 NEKKLD--EHTYDKGYKRWDKFDVDAALKEADEEAGIRQKS------------------------EQASASASEQSSGSAPLRVATTSKASTSSTT----KSREELEKEEGNAHYKRGDYVAAIKSYTRCLGYNPQNAVVLSNRAMAYLKNREFANAEDDCTLALKADPTHVKSYSRRGTARNSLGKHRLALLDFQHAATLDPKSRQIQTQLQSTRELIRTAIKRSPK 299          
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Match: A0A6G0W366_9STRA (RPAP3_C domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W366_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.200e-35
Identity = 100/240 (41.67%), Postives = 127/240 (52.92%), Query Frame = 2
Query:  461 AEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPPDNSDSDTDGEEFSPTAAAACRPRRNPATTSHLSLGERLPVSRPAPAPSAGTTAMVQQDLEKK--ERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGKAESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSKQIRKDMSKMLETLKAVVRRAPKHRVKVESEPLPAPKPRTP 1174
            ++H +D GY KW  FDV+AAL+EVD                               RPR  P     +   ER PV +   A     TA     + +   ++E GN  F  GDF  AI CY+R +  + ++ V  SNRAMA+LK+ +F KAE DC AAL  DS HVKSL R A ARN+LGKH AAL DL+AA  +DPTSK I   + +  E +K  VRRAP  RV+V  E  P P+P  P
Sbjct:   81 SQHVYDKGYQKWDSFDVEAALKEVD----------------------------EPARPR--PTAQESIPQPER-PVKKVVAASRTTKTAPATPSVPRDVLDKEEGNRHFKAGDFAAAISCYSRSLSYNPRNPVVLSNRAMAHLKMNQFEKAEIDCTAALTADSGHVKSLVRCATARNSLGKHHAALLDLEAAMALDPTSKAIATQIKQTRENIKQSVRRAPTTRVQVVVEAPPTPEPAKP 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22.5815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8F8_ECTSI1.410e-13042.54RPAP3_C domain-containing protein n=2 Tax=Ectocarp... [more]
K3WL17_GLOUD6.430e-4135.56RPAP3_C domain-containing protein n=1 Tax=Globispo... [more]
A0A5D6XFC9_9STRA1.120e-3942.50RPAP3_C domain-containing protein n=1 Tax=Pythium ... [more]
A0A081B1U1_PHYPR8.300e-3943.17Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A8K1FBG6_PYTOL9.580e-3942.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2RGZ7_PHYPN7.890e-3843.17RPAP3_C domain-containing protein n=11 Tax=Phytoph... [more]
A0A0P1AW29_PLAHL5.950e-3733.82Uncharacterized conserved protein, contains LRR re... [more]
A0A2R5G9G5_9STRA1.330e-3644.78Peptidyl-prolyl cis-trans isomerase FKBP4 n=1 Tax=... [more]
A0A329RPX3_9STRA1.660e-3642.11RPAP3_C domain-containing protein n=2 Tax=Phytopht... [more]
A0A6G0W366_9STRA1.200e-3541.67RPAP3_C domain-containing protein n=1 Tax=Aphanomy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22contigH-paniculata_contig22:46434..54399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score437.2
Seed ortholog evalue1.7e-119
Seed eggNOG ortholog2880.D7G8F8
KEGG koko:K19870
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to arachidonic acid
EggNOG OGsCOG0639@1,KOG0376@2759
Ec32 ortholog descriptionRNA-polymerase II-associated protein 3-like, C-terminal domain
Ec32 orthologEc-14_002880.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons6
Model size2661
Cds size2454
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22.5815.1prot_H-paniculata_contig22.5815.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22 46438..54196 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.7671409-UTR-H-paniculata_contig22:46433..464371622929602.7671409-UTR-H-paniculata_contig22:46433..46437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22 46434..46437 +
1691480931.558736-UTR-H-paniculata_contig22:46433..464371691480931.558736-UTR-H-paniculata_contig22:46433..46437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22 46434..46437 +
1622929602.875188-UTR-H-paniculata_contig22:54196..543991622929602.875188-UTR-H-paniculata_contig22:54196..54399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22 54197..54399 +
1691480931.6265707-UTR-H-paniculata_contig22:54196..543991691480931.6265707-UTR-H-paniculata_contig22:54196..54399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22 54197..54399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.7836015-CDS-H-paniculata_contig22:46437..466041622929602.7836015-CDS-H-paniculata_contig22:46437..46604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 46438..46604 +
1691480931.5716534-CDS-H-paniculata_contig22:46437..466041691480931.5716534-CDS-H-paniculata_contig22:46437..46604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 46438..46604 +
1622929602.8013806-CDS-H-paniculata_contig22:49498..498861622929602.8013806-CDS-H-paniculata_contig22:49498..49886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 49499..49886 +
1691480931.5820749-CDS-H-paniculata_contig22:49498..498861691480931.5820749-CDS-H-paniculata_contig22:49498..49886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 49499..49886 +
1622929602.8180761-CDS-H-paniculata_contig22:51199..514621622929602.8180761-CDS-H-paniculata_contig22:51199..51462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 51200..51462 +
1691480931.5926106-CDS-H-paniculata_contig22:51199..514621691480931.5926106-CDS-H-paniculata_contig22:51199..51462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 51200..51462 +
1622929602.8336782-CDS-H-paniculata_contig22:51885..519491622929602.8336782-CDS-H-paniculata_contig22:51885..51949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 51886..51949 +
1691480931.6034038-CDS-H-paniculata_contig22:51885..519491691480931.6034038-CDS-H-paniculata_contig22:51885..51949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 51886..51949 +
1622929602.844934-CDS-H-paniculata_contig22:52161..523321622929602.844934-CDS-H-paniculata_contig22:52161..52332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 52162..52332 +
1691480931.6111434-CDS-H-paniculata_contig22:52161..523321691480931.6111434-CDS-H-paniculata_contig22:52161..52332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 52162..52332 +
1622929602.859189-CDS-H-paniculata_contig22:52795..541961622929602.859189-CDS-H-paniculata_contig22:52795..54196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 52796..54196 +
1691480931.6188776-CDS-H-paniculata_contig22:52795..541961691480931.6188776-CDS-H-paniculata_contig22:52795..54196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 52796..54196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22.5815.1

>prot_H-paniculata_contig22.5815.1 ID=prot_H-paniculata_contig22.5815.1|Name=mRNA_H-paniculata_contig22.5815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=818bp
MVAVGRGKRAAPADTGRVSGAAAFRTQNQIRQNAQDMQDYLTDLGKWEKS
IKKKDKQLSRKAAASSAQRPVADIAKNDGPPIRQHCGTVAITSGPPPIKP
KAKGGSNGCHNDQLQGDSPTASGSTNNPATNGTLRDSGKTTSHGTNEKSV
SAAEHTHDNGYVKWAKFDVDAALREVDGEKNGSEKKPPDNSDSDTDGEEF
SPTAAAACRPRRNPATTSHLSLGERLPVSRPAPAPSAGTTAMVQQDLEKK
ERERGNVMFSKGDFEGAIKCYTRCIGMSSKSAVAFSNRAMAYLKLREFGK
AESDCNAALQLDSIHVKSLQRRAVARNALGKHRAALSDLQAAAEIDPTSK
QIRKDMSKMLETLKAVVRRAPKHRVKVESEPLPAPKPRTPPGAQSSLVKA
DRLSSISSLASVFPVDTKMIAVDPSSIPRTTTPTVTPATIRTNGGGVSFE
EKRDTVCPGAPSGSGLSNDDGEHVASRTTVKELPDDGRSKSEVVAPLRSP
SSQKAEEVSIASSSLARMAADDRQPVDAATARAVKAGATVEQKTPVIPTD
SDASATAVSPSASSPRPPQASTNPRVSAVAGSEVATAEPTAGTRAPSAVD
RGDVGPAEAASLEVTKKNKSSTDADAPGAETGGKIGAKGENDLLSMAVAV
LPARTKQANEVKRTKKRTRSTRLSASTNSASTAAISPDAAAKLLPTTGYQ
LEHMWRSAATSSDPDARVELLRTLPPSSIVKIFRHTPLEVELLEEILGHL
GAALLPRRPATAMRWLKSLSKASRFGMAVSLMGEKGQRSVRELMKQIEAS
SIKREELEALKKQFSLL*
back to top

mRNA from alignment at H-paniculata_contig22:46434..54399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22.5815.1 ID=mRNA_H-paniculata_contig22.5815.1|Name=mRNA_H-paniculata_contig22.5815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7966bp|location=Sequence derived from alignment at H-paniculata_contig22:46434..54399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGATGGTTGCTGTAGGGAGGGGGAAACGTGCAGCCCCGGCTGATACTG GACGTGTTAGTGGGGCAGCTGCCTTTCGAACGCAGAACCAGATTCGGCAA AACGCGCAGGACATGCAAGATTATCTTACCGATTTGGGGAAGTGGGAAAA GTCGATCAAGAAGAAGGACAAGTAAGTCCATCACGCAGACTTATATCAGC TGTACCAGTGACAATAGACAGCAGAACACGCGAAATGCGGTGACAGCGTG TATCAGTCATCCGTTTCGTGGTTGGTGCTCGTAGTTTATGTATATTTCAT AAACTCGCTGGACGATGTCTGTTTTTTCGAGTCTGCAGGTGTTGTGCCTA CTACTGTCTCCCAGGTTTGAAAACAACCATGCCCCAAGATCGGATATGGT GTGCCTCTACAGTAAGACAGGCAAAAGCTTAATTGCGTATCAGGCCCCTT TATGTTCCGAAACAGCCCCCTGCGCTATAAGGCTTATCCCTAGCACAACC ACCTAATTTTATTCCAAACAAAAGCGGCTTTTTAGTCGGGGTATGCCATA GAATTGGGGAGGCATATTGAAGTTATGCAGCTGACTTCAATCTGCAATTG TATACACTCATCAGCAACATTGGATCCATGCGGGGTCTTCGTAGAACAAA CGGAGGGTTGCTCAGCTTCTTCAAGCTAGTGAATTAGTTGCCCACTAATT GACCAAACTTGGTCTCGGTTTTTTCTTGTTTTGTTTTGGTCGCGGATCAG TCCTCCTCTGCGAAAACGGGAAATGACCATTACACTGTTCGTAGAATCCC CACATTCCCCCAGCGGCACGAAAGCAACTTTTATTTCCTTTGCTCAGTTC CGTTTCACTAACAAATGAGCGGTGGCTGCAACGTCCAAGTTAGACACGGG CTGCTATTCTGGACCAGAGATGACAAATGATGGTTGTATGTGGCGAGTTA CACGAGGCGGGGTCGTACCTACTTCCTACTGTACAGGCAAAATACGATAG ATTGTCAGATGATAGCTGATGTCTGGGGCTGTGTACCGGTACGGATACAA GAACAATACATCGTATTTTGGTCCGATAGATAAATACATGTATCGATCGG TCGTCTTCCCGATATGTCGATATATTTCCTGAATAATGTGGTCATTATCC ACTGAATGCGCACATATTATAGTCATGCTCCGACAGCTCATGGCACCACA TGAACGCCGTGGAACAGCACACCCCACCAAGCAGTGTACGACACGCATGA GCTCCCCCTGTCCTTTAGCACGCCGATGACATAATACCTTCGATTTCAGT GTATTTTATTTTAATATTTTTGAGGTTGAAAGTTCTCCTTTTCCTCAATT TTTTTCTCGTCAGTTTGATTGCAGGCTGCCTCCAGGAGGTACTCGAGATC CTCCATTTCGAAGAGATACACCTAAAAGACGTAATTTTTCTGCCTCCGGC GAGGCCCGCCCACCAACCAGGCGGGGCGTTGGGGCTCGTGGCAATCCGCT CGCCTGCTCGTGCTCACGCAGTCGCCTGGCGCTTCGCGCGACTGGCTCGC CTCGCTTGTACCGATGCATTATGAATATATCGGTTTTGCCGACCGACCGA TGTATTTGTATACTTTCAAATGACCGATGCACAGCCCTACTGATGTCAGT ACACCTCTTCTTCTGAATGTTGTATGAATTACCACGTTACATTGCTTGAT CAAGTATCATACTACGGTGATACTTCGGACGGTATCGACCACTACGTGGT AGGTTTGTTAGTACTATTTTTAACGAAATATGATCGTGATCCCAGCTGCG CGAAAGCTCCTCAAACCGCGTTCCCTTAAAGTGGTCCCCTCTCCCATTTC AGACGAATAATTTTGATTCTGAGATTTGCTTTGCCCAGATTTGTGGAGTC TCAGAAGAGACCGCCCTAGGCACGAGAATAATCATCTCTTTGCAAGCGAT GTTGTGTTTTCACAAATGTTAGCGATCTGTAGCAACAAGTCGATCAAGCC AGTATTTTTTGCCCCCCCCGTACCCTCCCAGATGACCCTCGACACTTCAA AACCTGGAGTGCATGTTCAACAGATACCTGTTTCTTGTGTTGGGACGACT ACTTGATTTCGATATTGTGTCAGAACTACTTCATTTCAGTGTGGTATTTA CTTGACTTCGGTATGGGAGTCCAGAACAGCTTGATTTAGTGTGGTGTACT TGATGTCAATGTAGTGCCGCAAACAGCTTGTCTTTATTATCACCTTATCG ATCTACAACTCATGACCCACGTAGACCCGGGTCTCTATGTACGCACTTTC GATTTGTATACAATATGCAGGAAACCCTTTTGAAAAAAGTATTGGGAAAT ATGCCGAAAGGGACTCATCATCCCCTCAAAAGTAAAGGATTCACAAAGTA GAATTTTCGATAGGCAACCTTGTAATGGTTTTAGTTAGTTGTAGTGCGGA TTCCCTGAAAGGTCCCTTTTTCTTCTTGTGTCATCGGGTAACCTAAAAAG GAAACTTTCACTCCCATTCACTTAGTACGCCATTTAACAGCGATGTCAAC ATAGGTTTGTGTGCCATTTTAGAGACAGCCTGATGTCCTCCTTATTCATC TTCGTTTTATCCTTAACTCTCTCTGCAAACACGCGTTTTGTGCTATTTGT ACAGTTTGTAGGCCTCCAGTTGACCCCGCAAAGGGAGAGGGATAAGTTTG TTTTACTGGTATTTATAGTGTAGTTCATCTTTGGAGGCAGTGCCGTTGGC ACAGCATGCGCGTGCGTATCTACAATCCACAAAAAGCACCACACCGGATT TTGTAGACATATGATAACTCTCGCCCCGTCCATTGCCGCGTAACTGCACA CGAGAGGTACATTGGTATCATGTCAAATAACCAACATTTACAGGAAGTTA GAGAACACTATCGCCGACAACGTATACTCGCTTGATCGGTGGATTTCATC GCAGAGTAGCGATTACATCAAGTCACGATCACTCGGGAGAAAATAAACAA CAACACGTCGTGCACGCAGAGACAGACCCCTCACAATGCAGTTCCTTCCA TGTGTACACCCGCAGACAACTTTCTCGAAAAGCAGCAGCAAGTTCAGCCC AACGACCAGTCGCCGATATTGCCAAAAACGATGGTCCGCCAATACGCCAG CATTGCGGAACAGTTGCTATTACCTCCGGCCCTCCGCCGATCAAACCCAA GGCAAAAGGGGGGAGCAACGGCTGTCACAACGATCAGCTGCAGGGCGACA GCCCGACTGCTTCTGGATCAACGAACAACCCGGCAACGAACGGTACGCTT CGTGATTCAGGAAAGACCACGAGCCACGGAACCAACGAAAAATCTGTGTC GGCGGCGGAGCATACTCATGATAATGGGTACGTGAAGTGGGCTAAATTCG ATGTCGACGCCGCTCTCCGAGAAGTAGACGGCGAGAAAAACGGGTCAGAG AAGGCAAGACTTCAGCATAACGAATTGATGCGTAGTTCGTCTTTCCCATG ACAGGTCCAAATAGTGGGGTGTTTGCGAAGAGACGATGATTTCGTTTCAA ATCTGGTTTAGCTCTTCACATGTACCGTCGAAACCCTTTCTTGTTTCCCT GTATCACGAAAAAATTGAGCTAGCATGTCGCGAAAGCTGACAAAAGATAG GAATATTGAAATCATAGTAGGGCCGATGTTCGGAATAAGCTATGGTTAGC CAGTACGGCCCAAGATTAACCCGATGCCAAGAACCCGGGGAAGTTGTAAA TGGCATACTATACTGTCTTTCCTGTGCCGAGGCACCCTCTCTTGCCCTCT GACCAATTGATTATGCACAAGCCTTTACCATGTGCACCTGTGGTTGCAAC CGTTGTGTCGTTTGTGTTCACTGTGTGCTATTGATCTTGGTTGCAATCGC GTACGACTTTGGGCATTTGTGTGACATTTCAACGAAGATACTGCATGTTC TTTGGTGTTGATACTGCATGTCACAAACGCTTCGTTGCCATTGTCATACG TACTACCGGGCTGTCGCCCTGCCAAATGTTGTTGCACTGTTTGTCTGTAC TGCTGCTGTGTGTTGGACGAAGTCTCTAGGGCTTAGATACCCATTGTCAT GGTAGCGTGTCCTCTAAGAGGGACAATCGCTGTGGGGTTTGCTGTGGGTT GCTTTCGCGTGTTTCACACACGTGCGTCAAGTACCTACCTGCTAGGAGAT TTCATCAAATTTCGAATCTTCGCAAACTGATTTCAAACATCTGGACTGGA TACGGAATAAATTAAAATTCGCACAACGAATATAGATTTTTGCAAATAGT GTAGTGTTTCCTGCTTTCATGCCGTGGTCATCGCATTCGAGCGTGTACTT CCTCGGTCACGTTGATTTGTTCGACGACTGTGATTGCCAGAAAATTCTTG AGTCCCACCGCATTGCACATGATTCGATTATCCTGCAACAGAACCGATAT ACCGTGTGCCAAGATACCGGTAAAACGTTGAAGGAAAACGTGATACGTGA AAGATTTAAATGGCCGGTCCAAAACCAAGATCGCGGATTTGTAGTAGCTT GCAAGGCTGCTGCACGATTCAGACGTGAACGTCTACCAGTATAATTGCGT TCTAGTTTGTACGCGCGTGGCTGACTACTACTGAATCCCCACCATCAAAC GGCAGCGTCACAGCGCGGCGATAACTTGACTCAATTCACCGATGCGCCTC TTTCCCGCTTCCATTGTTGCATTTTGCTGATTACCCCCCCCATTGGCTCC TATTTGGTTGCCACAGAAGCCCCCAGATAACAGCGACAGTGACACAGATG GAGAGGAATTCTCCCCGACTGCCGCCGCCGCATGCCGCCCGCGGCGAAAC CCGGCCACTACATCACATCTATCTTTGGGTGAACGGTTGCCTGTCTCTCG GCCTGCTCCAGCGCCTTCCGCCGGCACGACGGCTATGGTACAGCAGGACT TAGAGAAGAAGGAGCGCGAACGTGGAAACGTCATGTTCAGTAAAGGGGAC TTCGAGGGAGCAATAAAATGTTACACGAGGTGGGCACAGATTTGCAGGGC GACTGCAAAACTACTGTAGTGCGTGCCCCCTAGAGTAGTACACCGACTAA AATTTTGAGGCTGCTGCTTCTTTACTTTTCGTAGAGTCAACCGTGCAGGA GTGTTTGTCGAGAGCTTGGTGTCAAAGTTTGCCGAATTGCTTGCAGACTG CCATGTTTGGGGGTATTCCCGTGGTAATAGTGGTGCGACTCTGGCCCGAT GTGTTGTTCCCAGAGAAAATGCGTCAGGTGTTGTAACACCCGTGGTGTTT TGATTGACGTCCTCTGTATCCGGTTATCGCAAGGGTTGTCCTAGCCAGGA TATCACTACCGGGACAGGAGAAACATTGCGCACGGGTATCCTGGGATTGG AAATGGCGGTGTTTGACCCACAACCCTCGTTTTTCCCCCCCATGCACTCC AGGTGTATCGGCATGAGCAGCAAAAGCGCGGTGGCCTTCTCCAATAGGGC CATGGCGTACCTCAAGGCGAGTACATAAATTAGTTCGCCAATTTTCTCCA AGTTTCTCTCATGACACATTTTTGGGACCGTAGTCGGCTTGTGGTCAAAT CCAGTGTTCATCAGAATGTAAACCGCACCTCATGTCGTGTATACAGCATT TGATCCAGAGAGTTGCGAGTGCTTGGTAGCGCTCACTTTGACCATGCTCG TTTCTCAACGTCATGATACCAACCGTAGCTGAGAGAGTTTGGAAAGGCGG AAAGCGACTGCAATGCGGCCTTACAGTTGGACTCCATCCACGTGAAGTCT CTGCAACGACGAGCGGTGGCCAGGAACGCACTCGGGAAACATCGCGCTGC GCTCAGTGATCTCCAAGCAGCGGCGGAAATCGATCCCACGTCCAAGCAGG TTATGTTTGCCCTCATGTTTCTTTGCCTGGGTTTGACTCGGCAATTTCGA TATTCTAGGATTACCCTATTCTTTTCTCACTTTTGTTTCTCGAGCAGGAT ATTGTGCACCTCCAGAAGAATGTCGCATTTTTTTGCCGAATCGTCTACGC GGACTGGAAGGAGGGTTGTACTTGTGGCATGAAACCGATTGAACGGTTGC CAGAGTCCAAAGGGCTGCAGTCATGTAGCTTTGCGAACTCATTAGCATTC ACTGCGTGGTACTGCAGGCGATGTGTAGCTATTCGATACTAGATAGCACG CATACACGGACCAAGTTCGTAGTGTCATCTTGAGCTAATGATTTGTTCGG GAGACTGTCGGCTGGCTTCATACGCATTTCACTGGCGAAACGAGCCACCG CTGGTGGCCGATTTCGTTTTTACACCCGTCTGACACGCCGCATTGTTCCA CTATACGGATAGATTCGCAAGGACATGAGCAAAATGCTTGAGACGCTCAA GGCCGTGGTACGTCGAGCACCGAAGCATCGGGTGAAGGTCGAGAGCGAGC CCTTGCCGGCTCCCAAGCCACGCACCCCGCCAGGAGCGCAGAGCTCCCTT GTGAAAGCGGATCGACTCTCTTCAATTTCCTCTCTTGCCTCAGTTTTCCC CGTCGACACGAAAATGATTGCTGTCGACCCTTCGAGCATCCCCCGTACCA CTACCCCCACAGTCACCCCCGCCACGATCCGCACCAACGGTGGGGGAGTG AGCTTCGAGGAGAAGCGCGACACGGTATGCCCGGGGGCCCCAAGCGGAAG CGGTTTGTCGAACGACGACGGAGAACACGTTGCCTCGCGGACGACTGTCA AGGAGTTACCTGACGATGGCAGGAGTAAAAGTGAGGTCGTCGCCCCGCTT CGGTCACCATCGTCGCAAAAGGCCGAAGAAGTTAGCATTGCGTCGTCATC GTTGGCGCGGATGGCTGCGGATGATCGACAACCAGTTGATGCAGCGACGG CGAGAGCAGTGAAAGCGGGCGCGACTGTTGAGCAGAAAACGCCAGTGATA CCTACAGACTCTGATGCTAGTGCCACAGCAGTATCTCCGTCAGCGAGCTC TCCTCGACCTCCGCAAGCTTCTACTAATCCCAGGGTCAGTGCCGTCGCGG GGTCAGAGGTGGCGACGGCTGAGCCCACAGCGGGTACGCGAGCACCCTCT GCAGTGGATCGTGGTGACGTTGGCCCTGCAGAAGCAGCCTCTCTTGAGGT GACCAAGAAGAACAAGTCATCAACTGACGCGGACGCACCAGGTGCCGAAA CTGGCGGAAAGATCGGTGCAAAAGGAGAGAACGATCTCCTCTCGATGGCG GTGGCGGTGCTACCGGCACGGACGAAGCAAGCCAACGAAGTAAAAAGGAC AAAAAAGCGGACACGATCGACGAGATTATCGGCTTCTACTAATAGTGCTT CCACAGCCGCCATCTCCCCAGATGCGGCGGCCAAGCTGCTTCCAACCACC GGATACCAGCTGGAACATATGTGGCGTAGTGCAGCTACTTCTTCTGATCC CGATGCCCGGGTAGAGTTACTGCGAACTCTGCCCCCTTCCTCGATTGTGA AGATTTTCCGTCACACTCCGCTGGAGGTGGAGCTTTTGGAAGAAATTTTG GGGCACCTCGGAGCGGCGCTGCTACCCAGGCGGCCTGCGACGGCGATGCG GTGGCTGAAGAGCTTGTCGAAGGCATCGCGGTTCGGCATGGCGGTTTCGC TTATGGGCGAGAAAGGTCAGAGGTCTGTGCGGGAGTTGATGAAGCAGATA GAAGCATCTTCGATCAAACGGGAGGAATTGGAAGCGCTCAAGAAACAGTT TTCCTTGTTGTAATAATATGGTAATGACGGTTTCGACGTGAGCAGATCAG GCACCTGTTGTCATGGTTGCTCACGTCGGCGCACAGTATTTTCACCTCCA GATTTGGTGTGGATCTTGTGGTTTTCAAGCAGCTTGTCCTATGTGTTATT TTCTGCGACCGTTGGTTTTTATATGGTGAGAGACGGGCACAGGGGTGGGG ACGGCATTCATCAACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22:46434..54399+

>mRNA_H-paniculata_contig22.5815.1 ID=mRNA_H-paniculata_contig22.5815.1|Name=mRNA_H-paniculata_contig22.5815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4908bp|location=Sequence derived from alignment at H-paniculata_contig22:46434..54399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGCTGTAGGGAGGGGGAAACGTGCAGCCCCGGCTGATACTGGACG
TGTTAGTGGGGCAGCTGCCTTTCGAACGCAGAACCAGATTCGGCAAAACG
CGCAGGACATGCAAGATTATCTTACCGATTTGGGGAAGTGGGAAAAGTCG
ATCAAGAAGAAGGACAAATGGTTGCTGTAGGGAGGGGGAAACGTGCAGCC
CCGGCTGATACTGGACGTGTTAGTGGGGCAGCTGCCTTTCGAACGCAGAA
CCAGATTCGGCAAAACGCGCAGGACATGCAAGATTATCTTACCGATTTGG
GGAAGTGGGAAAAGTCGATCAAGAAGAAGGACAAACAACTTTCTCGAAAA
GCAGCAGCAAGTTCAGCCCAACGACCAGTCGCCGATATTGCCAAAAACGA
TGGTCCGCCAATACGCCAGCATTGCGGAACAGTTGCTATTACCTCCGGCC
CTCCGCCGATCAAACCCAAGGCAAAAGGGGGGAGCAACGGCTGTCACAAC
GATCAGCTGCAGGGCGACAGCCCGACTGCTTCTGGATCAACGAACAACCC
GGCAACGAACGGTACGCTTCGTGATTCAGGAAAGACCACGAGCCACGGAA
CCAACGAAAAATCTGTGTCGGCGGCGGAGCATACTCATGATAATGGGTAC
GTGAAGTGGGCTAAATTCGATGTCGACGCCGCTCTCCGAGAAGTAGACGG
CGAGAAAAACGGGTCAGAGAAGACAACTTTCTCGAAAAGCAGCAGCAAGT
TCAGCCCAACGACCAGTCGCCGATATTGCCAAAAACGATGGTCCGCCAAT
ACGCCAGCATTGCGGAACAGTTGCTATTACCTCCGGCCCTCCGCCGATCA
AACCCAAGGCAAAAGGGGGGAGCAACGGCTGTCACAACGATCAGCTGCAG
GGCGACAGCCCGACTGCTTCTGGATCAACGAACAACCCGGCAACGAACGG
TACGCTTCGTGATTCAGGAAAGACCACGAGCCACGGAACCAACGAAAAAT
CTGTGTCGGCGGCGGAGCATACTCATGATAATGGGTACGTGAAGTGGGCT
AAATTCGATGTCGACGCCGCTCTCCGAGAAGTAGACGGCGAGAAAAACGG
GTCAGAGAAGAAGCCCCCAGATAACAGCGACAGTGACACAGATGGAGAGG
AATTCTCCCCGACTGCCGCCGCCGCATGCCGCCCGCGGCGAAACCCGGCC
ACTACATCACATCTATCTTTGGGTGAACGGTTGCCTGTCTCTCGGCCTGC
TCCAGCGCCTTCCGCCGGCACGACGGCTATGGTACAGCAGGACTTAGAGA
AGAAGGAGCGCGAACGTGGAAACGTCATGTTCAGTAAAGGGGACTTCGAG
GGAGCAATAAAATGTTACACGAGAAGCCCCCAGATAACAGCGACAGTGAC
ACAGATGGAGAGGAATTCTCCCCGACTGCCGCCGCCGCATGCCGCCCGCG
GCGAAACCCGGCCACTACATCACATCTATCTTTGGGTGAACGGTTGCCTG
TCTCTCGGCCTGCTCCAGCGCCTTCCGCCGGCACGACGGCTATGGTACAG
CAGGACTTAGAGAAGAAGGAGCGCGAACGTGGAAACGTCATGTTCAGTAA
AGGGGACTTCGAGGGAGCAATAAAATGTTACACGAGGTGTATCGGCATGA
GCAGCAAAAGCGCGGTGGCCTTCTCCAATAGGGCCATGGCGTACCTCAAG
GTGTATCGGCATGAGCAGCAAAAGCGCGGTGGCCTTCTCCAATAGGGCCA
TGGCGTACCTCAAGCTGAGAGAGTTTGGAAAGGCGGAAAGCGACTGCAAT
GCGGCCTTACAGTTGGACTCCATCCACGTGAAGTCTCTGCAACGACGAGC
GGTGGCCAGGAACGCACTCGGGAAACATCGCGCTGCGCTCAGTGATCTCC
AAGCAGCGGCGGAAATCGATCCCACGTCCAAGCAGCTGAGAGAGTTTGGA
AAGGCGGAAAGCGACTGCAATGCGGCCTTACAGTTGGACTCCATCCACGT
GAAGTCTCTGCAACGACGAGCGGTGGCCAGGAACGCACTCGGGAAACATC
GCGCTGCGCTCAGTGATCTCCAAGCAGCGGCGGAAATCGATCCCACGTCC
AAGCAGATTCGCAAGGACATGAGCAAAATGCTTGAGACGCTCAAGGCCGT
GGTACGTCGAGCACCGAAGCATCGGGTGAAGGTCGAGAGCGAGCCCTTGC
CGGCTCCCAAGCCACGCACCCCGCCAGGAGCGCAGAGCTCCCTTGTGAAA
GCGGATCGACTCTCTTCAATTTCCTCTCTTGCCTCAGTTTTCCCCGTCGA
CACGAAAATGATTGCTGTCGACCCTTCGAGCATCCCCCGTACCACTACCC
CCACAGTCACCCCCGCCACGATCCGCACCAACGGTGGGGGAGTGAGCTTC
GAGGAGAAGCGCGACACGGTATGCCCGGGGGCCCCAAGCGGAAGCGGTTT
GTCGAACGACGACGGAGAACACGTTGCCTCGCGGACGACTGTCAAGGAGT
TACCTGACGATGGCAGGAGTAAAAGTGAGGTCGTCGCCCCGCTTCGGTCA
CCATCGTCGCAAAAGGCCGAAGAAGTTAGCATTGCGTCGTCATCGTTGGC
GCGGATGGCTGCGGATGATCGACAACCAGTTGATGCAGCGACGGCGAGAG
CAGTGAAAGCGGGCGCGACTGTTGAGCAGAAAACGCCAGTGATACCTACA
GACTCTGATGCTAGTGCCACAGCAGTATCTCCGTCAGCGAGCTCTCCTCG
ACCTCCGCAAGCTTCTACTAATCCCAGGGTCAGTGCCGTCGCGGGGTCAG
AGGTGGCGACGGCTGAGCCCACAGCGGGTACGCGAGCACCCTCTGCAGTG
GATCGTGGTGACGTTGGCCCTGCAGAAGCAGCCTCTCTTGAGGTGACCAA
GAAGAACAAGTCATCAACTGACGCGGACGCACCAGGTGCCGAAACTGGCG
GAAAGATCGGTGCAAAAGGAGAGAACGATCTCCTCTCGATGGCGGTGGCG
GTGCTACCGGCACGGACGAAGCAAGCCAACGAAGTAAAAAGGACAAAAAA
GCGGACACGATCGACGAGATTATCGGCTTCTACTAATAGTGCTTCCACAG
CCGCCATCTCCCCAGATGCGGCGGCCAAGCTGCTTCCAACCACCGGATAC
CAGCTGGAACATATGTGGCGTAGTGCAGCTACTTCTTCTGATCCCGATGC
CCGGGTAGAGTTACTGCGAACTCTGCCCCCTTCCTCGATTGTGAAGATTT
TCCGTCACACTCCGCTGGAGGTGGAGCTTTTGGAAGAAATTTTGGGGCAC
CTCGGAGCGGCGCTGCTACCCAGGCGGCCTGCGACGGCGATGCGGTGGCT
GAAGAGCTTGTCGAAGGCATCGCGGTTCGGCATGGCGGTTTCGCTTATGG
GCGAGAAAGGTCAGAGGTCTGTGCGGGAGTTGATGAAGCAGATAGAAGCA
TCTTCGATCAAACGGGAGGAATTGGAAGCGCTCAAGAAACAGTTTTCCTT
GTTGTAAATTCGCAAGGACATGAGCAAAATGCTTGAGACGCTCAAGGCCG
TGGTACGTCGAGCACCGAAGCATCGGGTGAAGGTCGAGAGCGAGCCCTTG
CCGGCTCCCAAGCCACGCACCCCGCCAGGAGCGCAGAGCTCCCTTGTGAA
AGCGGATCGACTCTCTTCAATTTCCTCTCTTGCCTCAGTTTTCCCCGTCG
ACACGAAAATGATTGCTGTCGACCCTTCGAGCATCCCCCGTACCACTACC
CCCACAGTCACCCCCGCCACGATCCGCACCAACGGTGGGGGAGTGAGCTT
CGAGGAGAAGCGCGACACGGTATGCCCGGGGGCCCCAAGCGGAAGCGGTT
TGTCGAACGACGACGGAGAACACGTTGCCTCGCGGACGACTGTCAAGGAG
TTACCTGACGATGGCAGGAGTAAAAGTGAGGTCGTCGCCCCGCTTCGGTC
ACCATCGTCGCAAAAGGCCGAAGAAGTTAGCATTGCGTCGTCATCGTTGG
CGCGGATGGCTGCGGATGATCGACAACCAGTTGATGCAGCGACGGCGAGA
GCAGTGAAAGCGGGCGCGACTGTTGAGCAGAAAACGCCAGTGATACCTAC
AGACTCTGATGCTAGTGCCACAGCAGTATCTCCGTCAGCGAGCTCTCCTC
GACCTCCGCAAGCTTCTACTAATCCCAGGGTCAGTGCCGTCGCGGGGTCA
GAGGTGGCGACGGCTGAGCCCACAGCGGGTACGCGAGCACCCTCTGCAGT
GGATCGTGGTGACGTTGGCCCTGCAGAAGCAGCCTCTCTTGAGGTGACCA
AGAAGAACAAGTCATCAACTGACGCGGACGCACCAGGTGCCGAAACTGGC
GGAAAGATCGGTGCAAAAGGAGAGAACGATCTCCTCTCGATGGCGGTGGC
GGTGCTACCGGCACGGACGAAGCAAGCCAACGAAGTAAAAAGGACAAAAA
AGCGGACACGATCGACGAGATTATCGGCTTCTACTAATAGTGCTTCCACA
GCCGCCATCTCCCCAGATGCGGCGGCCAAGCTGCTTCCAACCACCGGATA
CCAGCTGGAACATATGTGGCGTAGTGCAGCTACTTCTTCTGATCCCGATG
CCCGGGTAGAGTTACTGCGAACTCTGCCCCCTTCCTCGATTGTGAAGATT
TTCCGTCACACTCCGCTGGAGGTGGAGCTTTTGGAAGAAATTTTGGGGCA
CCTCGGAGCGGCGCTGCTACCCAGGCGGCCTGCGACGGCGATGCGGTGGC
TGAAGAGCTTGTCGAAGGCATCGCGGTTCGGCATGGCGGTTTCGCTTATG
GGCGAGAAAGGTCAGAGGTCTGTGCGGGAGTTGATGAAGCAGATAGAAGC
ATCTTCGATCAAACGGGAGGAATTGGAAGCGCTCAAGAAACAGTTTTCCT
TGTTGTAA
back to top