mRNA_H-paniculata_contig22.5812.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22.5812.1
Unique NamemRNA_H-paniculata_contig22.5812.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Match: A0A6H5JG03_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG03_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 6.620e-76
Identity = 144/207 (69.57%), Postives = 172/207 (83.09%), Query Frame = 1 
Query: 2380 TEIKRQERNAREQRRSLRTSQQFDKLRALLVESGIEPKSTKSSVLIEVANLIHQLEDRLEGLEQDRQKWMSDTADVPDVAREDPNGGAIDCKQVFAHASVALAMANVEGRLMESNLQFEALSGYSRDELKQLTLLSLAGPSDLSKTFELLSAMLTDGTGKAPEQVWAKAELKSDASNLCLSITLARDALGRPKFFLCHLLPNDDTAS 3000
            +E+KRQERNAREQRRSL TS+Q DKLR LL E GI+ K+ KSSVL EVA+   QL+ ++E LE++R +WM++T+DVP+V R+DPNGG IDCKQVFAHASVALAMA VEGRL+ESNLQFEALSG+  +ELKQLTLLSL  PS+L +TF+ LSAMLTDGTGKAPE V +KA LK+   +L LS+TL RDALGRPK+FLC LLPN   AS
Sbjct:  195 SELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAAS 401
[Close]
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Match: D7G8G2_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G2_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 1.600e-52
Identity = 103/147 (70.07%), Postives = 125/147 (85.03%), Query Frame = 1 
Query: 2380 TEIKRQERNAREQRRSLRTSQQFDKLRALLVESGIEPKSTKSSVLIEVANLIHQLEDRLEGLEQDRQKWMSDTADVPDVAREDPNGGAIDCKQVFAHASVALAMANVEGRLMESNLQFEALSGYSRDELKQLTLLSLAGPSDLSKTF 2820
            +E+KRQERNAREQRRSL TS+Q DKLR LL E GI+ K+ KSSVL EVA+   QL+ ++E LE++R +WM++T+DVP+V R+DPNGG IDCKQVFAHASVALAMA VEGRL+ESNLQFEALSG+  +ELKQLTLLSL  PS+L +TF
Sbjct:  200 SELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETF 346
[Close]
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Match: A0A6H5L902_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L902_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.420e-18
Identity = 67/169 (39.64%), Postives = 97/169 (57.40%), Query Frame = -1 
Query:  341 REAPGYTRAGSSREAAEAQKRPYLTELLRLKAEVTEYDNMPAIV-SHQFDLLQYSSDTANPELDSDDNVLEKPRFPLLSM*GRVFHSIDSTICQSERDFSSLAITMSKLRRSMIPERVDM-MLLKLNFERIPGVRAVLQRLDGRKAVQQRERMLAAEAQAAKAGEVVQV 841
            R+A     A ++R +A   + P +T+  R++ EV EY  +PA V +  +D+L +  D  +P LD   NV+   +FP+LSM  RV+  IDST CQSER+FS L    + LR++M+P+RV+M M L+ N   IP +  +   L    A Q   +  AA  QAA AGE V V
Sbjct:  132 RQARKVQEAAAARTSARRDQ-PSVTD--RVQKEVDEYTKLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIPEINKLDNGLGKLLAAQAVGKAKAASVQAANAGEQVVV 297
[Close]
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.710e-17
Identity = 79/239 (33.05%), Postives = 115/239 (48.12%), Query Frame = 1 
Query: 2389 KRQERNAREQRRSLRTSQQFDKLRALLVESGIEPKSTKSSVLIEVANLIHQLEDRLEGLEQDRQKWM--------SDTADVPDVAREDPNGG---------------------------AIDCKQVFAHASVALAMANVEGRLMESNLQFEALSGYSRDELKQLTLLSLAGPSDLSKTFELLSAMLT-DGTGKAPEQ-----VWAKAELKSDASNLCLSITLARDALGRPKFFLCHLLP 2982
            +R ERNAREQRRSL+ SQ+ D+LRALL +SG+  KS+KS++L E   LI  L+ R   LE +R   +        S +A                                         +D + +F +A++ LA+ +V G +++ N +  A +GY R+EL  LT+ +L   + L ++F L+S MLT  G   A  Q     V    +L+       LSI L RD L RP+FF   L P
Sbjct:   68 RRLERNAREQRRSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQLVQGLSGSSSAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSFALISGMLTVAGAAAAAAQQRGAHVDMPCKLRDGQPGGVLSIALVRDELLRPRFFAISLAP 306
[Close]
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Match: A0A7S1BWH9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BWH9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.970e-16
Identity = 72/250 (28.80%), Postives = 118/250 (47.20%), Query Frame = 1 
Query: 2383 EIKRQERNAREQRRSLRTSQQFDKLRALLVESGIEPKSTKSSVLIEVANLIHQLEDRLEGLEQDRQKWMSD---------TADVPDVAREDPNGGAIDCKQVFAHA----------SVALAMANVEGRLMESNLQFEALSGYSRDELKQLTLLSLAGPSDLSKTFELLSAMLTDGTGK--APEQVWA--------KAELKSDASNLC--------------------LSITLARDALGRPKFFLCHLLPN 2985
            E +R +RN REQ+RS + SQQ  +L+ +L  S I  K  K S+L+  A  I QL+ R   L+ + QK ++          T   PD   +  N  +ID   VF             S A+A+A+++GR ++ N+QFE +SGY+++EL + TL +     D+ + F+++  ML +      +    W+        K +++   S+LC                    ++IT+AR   G  +FF C L  N
Sbjct:  119 EKRRYDRNLREQQRSYKISQQIKELKTVLSNSNIPFKPNKFSILLSTAVYIKQLQSRAMLLDSEHQKLLNSIGQASEMVTTGQSPDDLAQASNTNSIDADLVFVQGLQYSNIFYQCSAAIAVASLDGRFLDCNIQFEKVSGYTKEELTRETLFNFLTNDDMEEVFKVMGQMLKEDNNADFSARTFWSGVVLQKNRKVDVRIFVSHLCTIIKYCYSNTHVFFFYPKLQMNITMARAPDGTARFFNCALTSN 368
[Close]
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Match: A0A6H5L256_9PHAE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L256_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.120e-16
Identity = 54/152 (35.53%), Postives = 85/152 (55.92%), Query Frame = -1 
Query:  446 VANKPPQTFPGKACEDFIREAPGYTRAGSSREAAEAQKRPYLTELLRLKAEVTEYDNMPAIV-SHQFDLLQYSSDTANPELDSDDNVLEKPRFPLLSM*GRVFHSIDSTICQSERDFSSLAITMSKLRRSMIPERVDM-MLLKLNFERIPGV 895
             A  PP+     A   + R      +  ++   +  + +P +T+  R++ EV EY  +PA V +  +D+L +  D  +P LD   NV+   +FP+LSM  RV+  IDST CQSER+FS L    + LR++M+P+RV+M M L+ N   IP +
Sbjct:  111 AATPPPEKRARVATTAYERRQARKVQEAAAARTSARRDQPSVTD--RVQKEVDEYTKLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIPEI 260
[Close]
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Match: A0A4D9CZ03_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ03_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.510e-14
Identity = 72/247 (29.15%), Postives = 121/247 (48.99%), Query Frame = 1 
Query: 2377 ATEIKR-QERNAREQRRSLRTSQQFDKLRALLVESGIE-PKSTKSSVLIEVANLIHQLEDRLEGLEQDRQ-----------------------------KWMSDTADVPDVA-REDPN-GGAIDCKQVFAHASVALAMANVEGRLMESNLQFEALSGYSRDELKQLTLLSLAGPSDLSKTFELLSAMLTDGTGKAPEQVWAK--------------AELKSDASNLCLSITLARDALGRPKFFLCHL 2976
            A  +KR Q+RNAREQ+RSL+ SQQ   L++LL E G +  K++K ++L+ V + I +LE+ + G+   R+                             +  SD + V   + RED      +    +F   S  LA+A+VEGR +++N++FE  +GY++ EL++LT  +L  P +L  TF  ++ ML   +G+  ++  ++                L   A NL ++I+L +       FF C L
Sbjct:   23 AMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGXXXXXXXXXXMDVGVGTSVEAVGQRNGRSESDLSVVTATSVREDREVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELERLTFFNLVAPEELQDTFAAVARMLNQPSGEEEDKEDSEMLRLTRRALPKVGIGGLGQQAQNLHITISLVKPQEDSMAFFQCSL 269
[Close]
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.130e-13
Identity = 71/250 (28.40%), Postives = 114/250 (45.60%), Query Frame = 1 
Query: 2389 KRQERNAREQRRSLRTSQQFDKLRALLVESGIEPKSTKSSVLIEVANLIHQLEDRLEGLEQDRQKWMSDTADVPDVAREDPNGG----------------------------------------------AIDCKQVFAHASVALAMANVEGRLMESNLQFEALSGYSRDELKQLTLLSLAGPSDLSKTFELLSAMLTD--GTGKAPEQVWAKAELKSDASNLCLSITLARDALGRPKFFLCHLLPNDDT 2994
            +R ERNAREQ+RSL+ SQ+ D+LR LL +SGI  K++KS VL E  NLI  L  +   LE +R   +     +   A  +  G                                                +D + +F +A++ LA+ ++ G ++E N +    +G+ RDEL  LT+ +L   + L ++F L+S  L+     G  P+ V    +++       LS++L RD + RP+FF   + P   T
Sbjct:   21 RRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLS--AGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAISMSPAPTT 268
[Close]
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.160e-10
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = -1 
Query:  347 PAIVSHQFDLLQYSSDTANPELDSDDNVLEKPRFPLLSM*GRVFHSIDSTICQSERDFSSLAITMSKLRRSMIPERVD-MMLLKLNFERIPGVRAVLQRLDGRKAVQQRERMLAAEAQAAKAGEVV 721
            PA   + F LL++    + P   ++   +E P  P L++  R+FH I+ST CQ+ER+FS+LA  +  LR SM+P +V+ +M L+LN   IP V+A+   ++  KA   R +   A+ +A  AG+ V
Sbjct:  379 PAEEEYDFSLLEFWQRRSKPRTCAETGEVE-PGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAV 503
[Close]
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.870e-10
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = -1 
Query:  347 PAIVSHQFDLLQYSSDTANPELDSDDNVLEKPRFPLLSM*GRVFHSIDSTICQSERDFSSLAITMSKLRRSMIPERVD-MMLLKLNFERIPGVRAVLQRLDGRKAVQQRERMLAAEAQAAKAGEVV 721
            PA   + F LL++    + P   ++   +E P  P L++  R+FH I+ST CQ+ER+FS+LA  +  LR SM+P +V+ +M L+LN   IP V+A+   ++  KA   R +   A+ +A  AG+ V
Sbjct:  707 PAEEEYDFSLLEFWQRRSKPRTCAETGEVE-PGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAV 831
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22.5812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JG03_9PHAE6.620e-7669.57BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G8G2_ECTSI1.600e-5270.07BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L902_9PHAE5.420e-1839.64Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A835Z815_9STRA3.710e-1733.05BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S1BWH9_9STRA3.970e-1628.80Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6H5L256_9PHAE6.120e-1635.53Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A4D9CZ03_9STRA2.510e-1429.15Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A835YRU1_9STRA1.130e-1328.40BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6H5KAN7_9PHAE4.160e-1036.51Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE6.870e-1036.51Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22contigH-paniculata_contig22:538..12690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue6.7e-17
Seed eggNOG ortholog35128.Thaps20899
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helix loop helix domain
EggNOG OGs2C415@1,2T5J0@2759,2XF85@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons8
Model size4390
Cds size1758
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22.5812.1prot_H-paniculata_contig22.5812.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22 1829..11349 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.0508149-UTR-H-paniculata_contig22:537..18281622929602.0508149-UTR-H-paniculata_contig22:537..1828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22 538..1828 -
1691480931.231084-UTR-H-paniculata_contig22:537..18281691480931.231084-UTR-H-paniculata_contig22:537..1828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22 538..1828 -
1622929602.2107973-UTR-H-paniculata_contig22:11349..126901622929602.2107973-UTR-H-paniculata_contig22:11349..12690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22 11350..12690 -
1691480931.3138857-UTR-H-paniculata_contig22:11349..126901691480931.3138857-UTR-H-paniculata_contig22:11349..12690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22 11350..12690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.0667806-CDS-H-paniculata_contig22:1828..20171622929602.0667806-CDS-H-paniculata_contig22:1828..2017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 1829..2017 -
1691480931.240058-CDS-H-paniculata_contig22:1828..20171691480931.240058-CDS-H-paniculata_contig22:1828..2017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 1829..2017 -
1622929602.107895-CDS-H-paniculata_contig22:2166..22541622929602.107895-CDS-H-paniculata_contig22:2166..2254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 2167..2254 -
1691480931.2476225-CDS-H-paniculata_contig22:2166..22541691480931.2476225-CDS-H-paniculata_contig22:2166..2254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 2167..2254 -
1622929602.1203978-CDS-H-paniculata_contig22:2755..29191622929602.1203978-CDS-H-paniculata_contig22:2755..2919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 2756..2919 -
1691480931.2551124-CDS-H-paniculata_contig22:2755..29191691480931.2551124-CDS-H-paniculata_contig22:2755..2919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 2756..2919 -
1622929602.1343536-CDS-H-paniculata_contig22:3507..35831622929602.1343536-CDS-H-paniculata_contig22:3507..3583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 3508..3583 -
1691480931.2705038-CDS-H-paniculata_contig22:3507..35831691480931.2705038-CDS-H-paniculata_contig22:3507..3583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 3508..3583 -
1622929602.1511536-CDS-H-paniculata_contig22:4367..45261622929602.1511536-CDS-H-paniculata_contig22:4367..4526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 4368..4526 -
1691480931.278144-CDS-H-paniculata_contig22:4367..45261691480931.278144-CDS-H-paniculata_contig22:4367..4526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 4368..4526 -
1622929602.1638172-CDS-H-paniculata_contig22:4975..58181622929602.1638172-CDS-H-paniculata_contig22:4975..5818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 4976..5818 -
1691480931.2880666-CDS-H-paniculata_contig22:4975..58181691480931.2880666-CDS-H-paniculata_contig22:4975..5818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 4976..5818 -
1622929602.1777446-CDS-H-paniculata_contig22:7629..77301622929602.1777446-CDS-H-paniculata_contig22:7629..7730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 7630..7730 -
1691480931.2959678-CDS-H-paniculata_contig22:7629..77301691480931.2959678-CDS-H-paniculata_contig22:7629..7730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 7630..7730 -
1622929602.1973236-CDS-H-paniculata_contig22:11211..113491622929602.1973236-CDS-H-paniculata_contig22:11211..11349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 11212..11349 -
1691480931.3051815-CDS-H-paniculata_contig22:11211..113491691480931.3051815-CDS-H-paniculata_contig22:11211..11349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22 11212..11349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22.5812.1

>prot_H-paniculata_contig22.5812.1 ID=prot_H-paniculata_contig22.5812.1|Name=mRNA_H-paniculata_contig22.5812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=586bp
MLQGLQNSAKLLDKAVHWRGGTPGHVRIHAQGSQMGSSSMSVRDRKQPRA
GGDHDDTAKQATIGPRFMPGRLMADQLFGGGDGHHQSATTPAALKPRGNV
QPPLRAQGTTTDSKSSSSHSQSMDSAQRQYSQQQLQLQLQLQLQLQNHLL
QQAATASLLPTVYGNDMRDTAPNASMLLPPWTTNQAWRYPVPLPATATPS
LRTAVVETTVSPCQSAETTNAPLQLGMLDTAAAAAAGMGLGISMGQVPGH
LPSAEQQPQQQQQLSLENHFRAVAGAAVARAGGMSICSTGGNNGWEVGGD
GQIGVATVQGSSLPSGGDGGGGASSLSSLFLTSSPSSMSSSQELDATEIK
RQERNAREQRRSLRTSQQFDKLRALLVESGIEPKSTKSSVLIEVANLIHQ
LEDRLEGLEQDRQKWMSDTADVPDVAREDPNGGAIDCKQVFAHASVALAM
ANVEGRLMESNLQFEALSGYSRDELKQLTLLSLAGPSDLSKTFELLSAML
TDGTGKAPEQVWAKAELKSDASNLCLSITLARDALGRPKFFLCHLLPNDD
TASVASCSSGVTTYTSDSADSKGTDDVASSKRKIP*
back to top

mRNA from alignment at H-paniculata_contig22:538..12690-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22.5812.1 ID=mRNA_H-paniculata_contig22.5812.1|Name=mRNA_H-paniculata_contig22.5812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12153bp|location=Sequence derived from alignment at H-paniculata_contig22:538..12690- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCGAAGGCGGTCCTGGACGGCTATCCCACAATATACCCAAGGTTTGAG
CTTAACCGAAGGGTTGACCGACAAGACTGTACTCCATGCGTTCTGCATGG
GTCTGAAATCGGAACACGGTGAAAAGTGTTGTGGGCTTAAGCTTCTTCCC
CCTCGATGCTGCTGATACAGATTTTTTTTTGTGTATCTGGGGTAGAAAGA
AAAAGAACAACGAGACATCTGAATCAAATTGTACAATCATTGGCGGTCCC
CTACTGCGCTACACCCAATCCACCCCCCTCCGTAATCGTCAAATTTGGCT
TCTCCCTCTCAACGTCGTAGTTACAGGCTCCCTAGTCTATCACTTGAACC
ACTTCCCCCGCCTTTGCTGCCTGAGCCTCGGCAGCCAGCATCCGCTCCCT
TTGCTGTACCGCCTTCCTTCCGTCCAACCTTTGCAAAACCGCCCGCACTC
CAGGGATGCGCTCAAAGTTCAGCTTCAAAAGCATCATGTCAACACGCTCT
GGTATCATGCTGCGCCTGAGTTTGCTCATGGTGATGGCCAATGATGAAAA
GTCGCGCTCCGATTGGCAGATTGTACTGTCGATGCTATGGAAGACCCTTC
CTCACATGGATAGGAGAGGGAATCGCGGCTTTTCCAGCACGTTGTCGTCA
CTATCAAGCTCCGGATTTGCTGTATCACTCGAGTACTGCAGCAAGTCAAA
TTGATGGCTCACGATGGCAGGCATGTTGTCGTACTCTGTGACTTCCGCCT
TCAGACGCAATAACTCGGTTAAATATGGCCGCTTCTGCGCCTCAGCAGCT
TCTCGGCTGCTTCCGGCTCTCGTGTAGCCTGGCGCCTCTCGAATAAAATC
TTCGCACGCTTTGCCGGGGAAGGTTTGGGGAGGCTTGTTTGCTACTTTCG
TGGGCTGGAGCAGTGGGTGCAGCTGCCGGGTGGGTGGGTCCCCCCGCTTC
ATTTATCGTGGAACCGATCTTTGTCGAAGCTTCGCGAGCCTTCGCTCTCA
AGCGGCCCTCATCGTCACCGTTTCCACAGACGTCAGAAGATAGCGACTTG
TAGCCTGGGTCCAAGTAGAGGGTGGTCAACTCTGCGTTAGCTATGACGCT
GTCCACGTGGCGCATCTACAGCTGCTCCAAAGCGACCCGCCGCACGGTCT
AGCTGTCGTCCATGAGGTCATCGACTTCGACCATTTTGTTCTCGTCCGTG
ATATTGACAGTGGCATCGCAACGGCTCCTCCGGTCGGATGATCTCCACCT
TATCGGGACTCAGGATAGAGCATAGTTCGTGACAGAGGAAAATCACGCGA
CTCAGCTGGCCGTCTTTTCCTCCTTGGATGGCAACGTTGACATGCTTCAA
GGTCTCCAGAATTCTGCAAAGCTCCTTGACAAGGCAGTCCATTGGCGAGG
GGGCACGCCGGGCCATGTGAGGATTCATGCGCAGGGCTCGCAGATGGGCT
CCTCCAGCATGAGCGTGCGTGACAGAAAGGTGAATTGTGAATCCCACCTA
TCGTGAAAGGGAGGGCAACAAGAAGCAACATCAACTTACATGTTACATGT
TGGGTATGGTTGTTTATTACTAGTCTTGCGCCTAGTAATGAAAACAAGAA
AACACGGGCTAGATAATTGATTATTCAGCGGGCTCATTGAGATGCCCGTA
ACCCGTAAAGCGATAATACGAAAATAAGATGAGCACTCAGTGAAAACGCA
AACAGCAGTGCAGGGGCGTCGTTGGAAAAAGGGAAAATATAATACGAAGT
AGTTACATAAAATTAGGGATCTTCGCTATCAACTATTGACCCCAAAACCC
CCTAAAATAATCTCACCGGGTATCATTGCGACGGGCCATGTTGAGCACCG
TTAACTGCCGCCTGCCTATCCTAGCCGTCTCGCTGTCATCGCCTTCCGTA
CTCTTGTTTTCCCTATACCACCCGATGTGCCATTGCCTCTGTCGCCGTTG
CTGCCGTTGTCTTCATCACTGCATTCACACTTGTCAAGTCTAGTTGAAGC
CCGCAGTACCCTCCCATGTACCCGGCGCATTGAAACTCTTTCCGCATATT
CTTCAGCGTCTTGTCAAGGACAGAGAGTGAAGGCGTTGAGCTCACGTACT
CAGGCGAAAATTCTCCGACGAGCATCTTGAAGCCCATGTCATCGATGACT
ACCCACGGACGGCCATCCATGATAGTCCAAATGACCGTTTTCCGATTGAG
ACAGTTCTTCAGTTCAGGCGTGAGGGACACGGAGGTAGTATTGCCGAAAG
TATCCCTTCTCCCCAGTGTGCTGGACGCTGCAAAAGAGATAGGGAAGACG
GTCCACGGTTGTACGTGACGTTTGTGACTGTTATATTGCGTATATTACTC
TCGTATGTCGTCATCGCCCATGATGCACGCGTACAAGGAACACACTAGCA
CCGGCGTACAATGACAATTGGACACACGGAATGCCACAATCAAAAAGGCA
CACAATTTAGTACAACATACAAAAACAAGAAACAAAACAAACATAAAGAA
CACTAAAATGCTACTGTCTGTACTGTCAACTATCACATCAAGTAGAAATT
AAAATTGAGCAACTAGAACACGAAACACGAACAAATACGAGCAAACCAAA
AACAAAATTTGTAGCACAGACAGTGGAAGGTTACTTTTGTACTTTTTACT
GACTGTATTGTACAACTCCTATAGCCATACTCGCTGCCAACCAAAGTACA
AGACACAAAAAACGATCACGACCACACCTTACAGCCACTACTGTACTGCA
TGCTGACAAGAGAGGCGCGAAGTCGAAACCAATAACATATCTACGGATAA
CTCACCTGCGTCGTGTCGACCGAGCGCGGCACCTTTCTCCTCTTTGGTCT
CCCTGGAATGTCTGCTCCGCTATCCCCAGGTGGGAATTGTTTAAATGCTT
CATCAAGATGGACGTGCGAAGTGTGCTTCTTCTCCTGATTGCATGGTTTC
CCGTCATCACGCACATTGCAGTAGACGTTATTGTCGTTGCTCTTCGGAAT
GCTGTACTTGCTGAAGTGGCGCCATGCAGGCTTCGTCCTCGAACCATTCC
TCTTTGTCATGTCCAACTTCACTCATTGCCCTGATACGATCGGTGAAGCG
AACGCGAGTGTCGTGCCAGACTCGCCGCCGCCTGTAGACTGAAGAGATGT
CTGCGCGTGCGCGACGCGCGCACGCGCAGACTGCTGGGGCTGAGGCTGCG
ACATTGCTTCATCCGCTAATGCGGCCGCTTTGTGCGTTGATGGTGTTGAT
TGCGCCGCGCTGGACGAACCGCCCTCACACATGGGCGTATGTGACGCCAT
GAGACTTGCTCACTGCAGTTGCGTCCTTGTTCTCTACTACGAAGTAACAA
TTAGTAATAGTACCGTTGTCGTACCGTGCATATCACCATACATTAGGTTG
TTCGTCTGTTTACGGGCGTGTGCATTTGGGCGTTTGACCACGTGGCATGG
GGTGCCTGTACACTGTAACTGTGTACGGTCCAGGACCGTTTCCGGACCGT
CTAAATCATGCGGTACACGCTGATTTGGCCCGTATGAACGGTACGGTGAC
GGGCCAGTACGATATTTTCAGAATTTCTACGGTACGCTACGCTACGAGTT
GTACGGTAACTCTACCGTACCGTACAAAGCCCTGGAAATAATTGCATTTG
GTGTGCAGACGGTTGGTTTGGGTGGAAGTATTGTATTGGACACCTCCATC
CTGAGGAAGGCTTATTATTGGTCGGGTGACGTTTTCCCGCATGCTCCATC
GTGGCTCTCTGTTGTATGTGGTTGTGCATAGGATATTCAATGAGGAAAAT
TCCTCTCGGCAGGTTGAATTTTTGAAAAACGTTCTTCATATAAATAGTAT
AACATTCCAGCGCAAACGACTGCGAATTGAGCACAGTGTGTAAAAAAAAA
ACAAGAAATCATTTTTGCGATTACACAATAGAATGCAAGAATATGATTAT
CGTCCCACGGCGAAGGATACCCCGCCGAATATTTTCGCCCATGACGAAAT
ATCGCGGCGACCTGGAAAATTTCGTCGGGAAGCTGCAGAATCTATGTCCA
AGTGCCGCCACCGCCGCCGGGAAAACGTTGATATTTAGTACCCTGGTTGT
GCATCATGGTTATCGTCGGTGTTTTATTTCATCGTCATTTGTTTTATTGG
TTCGCGAAAATGACAAGAAAAATAGCAAAGCGTTTTACCGGAGACGGGAG
GAGGCAGTTAATCTACAAAAAGGGGGGAGAGTTACACCAGTTCCCCACAC
CTTTCAGATATGCCTGTTCACTAGTAAGCCCCCCGTTGCCTATATTGTCA
ACATACGTTTTTTATCTGAGCTCCGTAGGACGCATATTACTGCACGATTA
TCCATTTCGGGACCTACTGACCGCGGGTCTGAGGTATCCACATGATACAA
CCTGGTCGAAGGGTGGACTGCGGTGTAAAACGTCCACACCTCAGATGACG
AAGTGGTCGGATGAAAGTGCTAGCCTTCATGGACCTTTATGCTTCCTGCA
GATAAAAATTGGACAGTTTGAAGAACAGTATGAGGAGTTTACTTTGACAG
GACACCTATTTTTCTCTGCGTTTGAATAGTCGAAACTGGTGTTCATGCCT
TAGAAACAACATCGCTCCACAACAAAATATACTGCAGTAACCGAAATGAC
TCGCCTGTCCTCATCTCGTCGTTCCGAGGGGAAAAATGATCCAAAATATT
GCATTTGCCTTGTTTAAAAAACGTGCATGACATTCCATCCGCCCCGCCAG
GCCAAACTCAAAAACACGAGTGCAGGCGCTTGGTCGCACAATAGGCGGTT
GAGCCGATCCCACCTGACTTCACGAGGCAATTGCTGAATTGTACTGCATA
CAGCTGTAGTGTAAATGGCTCGGCCGCAAGGATTGTAAGTATCTACGCTG
CACGATCTCACCTGATTTCTATTTCTATTTTGTCTCCCTCCCAAACAATT
AATATTCCAGCAACCGCGGGCCGGAGGCGATCACGACGACACTGCAAAGC
AGGCTACGATCGGCCCCAGGTTTATGCCTGGAAGACTTATGGCGGATCAG
CTGTTCGGCGGGTGAGAGCACAGGACCTGGGGGGGTACCCTTTACTGTGT
ACTCTACGTTGGCAGGGCGCAGCTGTAATCTGCTACGATGGCGTTGGCTC
TTCGTATTATGGTTCAGCGTGTTACTCTTGTCAGTTAGCTCTCTTGGTTG
TCATTGTGCATGCTAAAGTCTGGGCACCGTCCCCGTCGCCCCCGTTGCTT
TGTGCCAGCAACAGAAATGCACTGGCTAGAAACACGCCTGTTGATAATAC
GCGGTGGTGGTGGTCGTCGTTACGAAACAGGTTTAACCCCGTTACACCTG
AAAAAACCAAGTACGACAGGCATCAGTCATTAGTCATGTCCCGACTGACA
CGACTGACCGTGGCAGACCGCCTGCTGCTGTGCCTGTGGGTACCGTCACT
CATAACAGGACGCCACACACGCGGCTATCGTTCGCTCTCGGGATAAATGC
TGGTGCCTGCCAGCTCTTGTGTGCCGCAGATATGGTGCTGCATGCAGCAC
TACGCCAACTATCTGCGCTTTGCATGTGGCAGTATTGTCTTTATCTTTTG
TCGCCAGGCACAACTCTACGGCATCCTGCTGTTTGCGCTGTGCAGCTGAC
TGCCACCGCTCAAGGGACCCAATATGTGTACTGCAGTCTATCAGATGTAC
TACTTCTACATCAAGTACACGGCACTCTGGATGCTGTGCCAGCCTTTGAC
GTACGTTAATATTGTCGAAATGTCCGATGTCCTTTTTTTTACACCTAGCG
TCGACATCTGATATCCTAAGTTCATATTGATACCCAAAACATGTCAAGAT
CCTGCTGTACTTCTTTTTATATGTTTGTCGACATACGGGTCTGATCTCAA
CCAGTCAAAGCCAATCTGTCCGTCGCACTTTGGTACCCTCCCCTACGATA
ATCCACCCCCCCCTCTCCCTCTTTTTTCGACGTGGGACTGTCAAAAACCG
CACGTTGAAACATCTTGAAATGCGGGCTTGCTGGTCTAAACTTTTTCAAA
ACGAACCTTCTAGGGTGGGTCTTATGACTGTATGCAAGCGTAGCAAGTCT
TCGTGAGTTGTGCGTGGGTTGGGGATAATGGCTGGATGGGTACGAGGATG
AAACATAAAGTGCTCGTGTCTGTAAAACACAGTATTTAGTGAGTGTTTCA
TGACTTCACATAGAATGCCACGGTTACACCCGTGTAGTTGGTGCGTTACA
CCCCCCGCATAAATACGAATACTTGCTGATGGTTTTCACCAAAAGCTTGA
GTATTCGTCAGAGTTTGAGAATAAGCTGATGTATTCTATGTGCCCCGGAC
CATTCACGACTGCTAATAATACTCATAAATCGAATGGACAGGGGTGGGTA
CCGTGAGCTTAAGCTCCTCCCCTCACAACGCTTCCGAGTGGTGCATACAG
AGGGTGCACACTCTGGGGTGGAAATGGAAAGGGGTGGGTACTTTTTTCTA
TGCGTCTGCTTATTCTGAAACTCAGACGAATACATCCAATTTTTCGTGAA
AACCAATTGAAAGTATTCGTATTTGTCGAGGGGGTGGTGCGTTGCCAACC
GATCCGCATACCGCCTACGATACTTTTTATCACCGGTCACGGTGCTCTCA
GGCCTGCCCCATGTTTTGCGAAACAAAACGGAACGAGGACGCGCGTATTT
ATTTGAAAAATGCATCGATAAATGGAACCCGAAATTACGCATCGCTCAAA
TAGCAATTCTCAGTGCCGTATCCTCGTTGACCTGTGCATTTGGTTGCAGC
ATGATATGTTGGAGTAACAATGACACCATGCGTACTAATTGTGTGATCAA
ATTTTCTGTATTTTGTCCTCAGAGGCGACGGTCATCATCAATCAGCAACG
ACGCCAGCAGCACTGAAACCGCGTGGAAATGTTCAGCCCCCTCTGCGTGC
ACAAGGGACCACAACCGACAGCAAATCGTCATCGTCACACTCCCAAAGCA
TGGACAGCGCTCAACGCCAATATTCCCAGCAACAATTGCAGCTGCAGCTG
CAGTTACAGCTGCAACTACAGAATCACCTGCTGCAGCAGGCTGCCACTGC
GTCTCTGCTACCCACCGTGTATGGCAACGATATGCGTGACACAGCCCCAA
ACGCCTCTATGCTGCTCCCCCCGTGGACAACCAACCAAGCTTGGCGTTAT
CCCGTTCCCTTGCCAGCGACAGCGACACCAAGCCTACGAACAGCGGTGGT
AGAGACAACAGTATCCCCTTGTCAGTCGGCAGAGACAACGAACGCTCCGC
TTCAATTGGGCATGCTCGACACAGCAGCCGCCGCGGCCGCCGGCATGGGT
CTAGGGATTTCTATGGGCCAGGTCCCCGGACATCTCCCATCCGCGGAGCA
GCAGCCGCAGCAACAGCAGCAGCTATCTCTCGAAAACCACTTCAGAGCAG
TAGCAGGTGCGGCCGTAGCACGAGCGGGGGGGATGAGTATCTGTAGTACT
GGAGGGAATAACGGATGGGAGGTGGGAGGGGACGGGCAAATCGGCGTCGC
GACTGTACAGGGTAGCAGCCTGCCGAGTGGCGGCGACGGTGGCGGCGGTG
CCAGCAGCCTTTCATCGTTGTTTCTAACTTCGTCTCCCTCGTCGATGAGT
TCTTCGCAAGAGTTGGACGCGACTGAGATCAAGCGACAGGAGAGAAACGC
GCGGGAACAACGGAGGTGAGCTATCGTGTATTCATATACAGGTGGTTCTT
GTTGCGATTTCGTGGACGCCTAGCGGCCCCTCGTTTTTTTGGGGGTTTTT
TGCTGCCCTTATAAGTTGTCTGTAGCACGCACGCACAAACCAGGAGGTGA
AAGAAATCTCGAATGGAAAAGTTTCCCGCTCGGCCGTTTCATGCTTGGTG
CGGGTTGCGCCGTACGATATCCGTCGTCAGTCTCACCGTACCTGTCTTTT
TGTGACACGTGTTTTGAGTTGTCATGGCGATTGATGTCCGAGTCATAGAG
CATCTTTCTTCTCTATAGTGCAGTCGTCTCTAGGCGGCTGATCCATGTTT
TAGTGCGGAGTGGTCGTCTACAAAAGTGTGAGGCATACTTGCAGTGTCTG
GACGGTGCCGAGCTTCAACTGTCATCAATATTTCAACCCTGCTGCTATTT
TCTGTCGCGTCAAGGTCTTTGAGAACGTCGCAGCAATTCGACAAACTCCG
GGCGTTGCTCGTGGAAAGCGGCATCGAGCCCAAGTCGACCAAATCCAGCG
TGCTGATCGAGGTGGCAAACCTAATCCACCAACTCGAAGACCGACTAGAG
GGATTAGAACAAGACCGGCAGAAGTGAGCTGCGACATGTACTAATAGTTA
ATATACTATATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGAAAGGTGGTTTATAGGGGGTTGTTTCACCTGCGAC
ACGATTGCGCTGTTTGTTGGTTCAGTGTCATCCACCATTCATTTCGCTTG
TGTCACTCTTTTCCCTCTCCTTGGTCTCCATACGCTGGCGTATCTGTTCT
TTTCCTTGGGAGCCTTTGTTAAAGCTGGACACATTGCTGTCGGTAGGTGT
GCTCTGAAATTACAACGCCGGAACCAGCCCCCCCTCCTCTCCCCCCCCTC
GGTTGCGCGCACGCCGCCCCTGCCGCCCCCGCTGCCCATCTTGTGGGGCT
TAAATATGGTGCTTTACCATCCGCCTTCGGTGCTGTGTACTCGTCTGTCG
TTGAGTGTCTATCTGTACTTGTTAGAAGTAATTCAAGCTGCCGCATGACC
TTATTGTATGCCATAGGGCGCGTTACTCATCCAGGGTGCCGCCCCTTGGG
GGAGGAGGGAGGCTGCAGTAGTCTTTAACTTTACGGATACTCAAACGAAT
GGGAAAGAGTGGGACGCACGCTTATCGTTTCTCTAGCTCGCGCGACGATT
GAAGACGTGATAGTCCACGTAAAAAAAGTCGTCTATGTTCAACATTCCTG
CCACTCCCTCAATAAATATAGCTATCCCGAACTGCCCCGACTTCGGACAC
ACCGCCGTTACCACGTACATATTTGGGCCTTTCCGTTTTCATGCTACTTT
TCCAAAGGTGGATGTCAGACACTGCAGACGTACCGGACGTTGCCCGAGAA
GATCCCAACGGCGGCGCTATCGATTGCAAACAGGTGTGTCTGTGTCTGTG
TGACATGTTTTTTCACCCATGACGCGCTACTTACTTTGGATGTCTACTGC
AGGATTAATCGCATAAAGTAAGTGCCTGACCATGCATGTTAAGCCTGTAT
TTATCCGTCGGTGTGTGAGGGATTAATACCTTCTGGGACGTACAATTGCA
CCTGGCATAAAGTCGATTAGACGATACATGCAGAGTTAAGTTTTGAATGG
TGGCATCTTCCATCAGATGGTAACCGAAGGGTGTTGCCCTACTTCTGTTA
GGAATGCGGCACGACTGCTCTCTACTGCTCGAGCGATTCATGGCGGCAAT
GTGATGGTTGTGCTCTGTCCTTGAGGGGGTGTGAATCTACTAGTGGAAAA
AATGACATGTTTCTCTTGGCCAAAAGGCGCGGGTTGCCGCCCGAAAGTGA
GATTCCCAGGAATCTGGTTACAATTTGATGAACGTTCCCATTTTTAAACG
AAATTATGTTCGAATACGACGAAAAAAGAGTGCCTAATTGTTACACATGG
TTAAGTTTGCAAATTGTGGTATAACCCCCCCCATCCGTCGTCTCCCTTCA
TACGGTCTCACCCACCCGCAGGTTTTCGCCCACGCAAGCGTGGCCTTAGC
GATGGCCAATGTGGAAGGTCGTTTGATGGAGAGCAACCTTCAATTCGAGG
CATTAAGCGGGTACTCTAGAGACGAGCTCAAGCAGCTCACTTTGCTCAGC
CTGGCGGGTCCATCGGACTTATCAAAAACTTTCGAGTAAGTCGGAAGGAT
TGGTTTCACGTGTGCTAACTGACTTTTTTCGATAGTTGCCAACTTTCTTC
TTTGGCGTTGACAGTTCCATTCGAGGATTTATCGTCTTCCAGAGAGCTTG
AGGAGGTTCCTGAGAAAATTGAAAATTCGACACACCTTTTGTTCAAATGG
TTTATATATCAAGAAGTAACGCAAGCACTATCCAGTTATTGTAACGCCTG
ATATGTCATAATTTTTGGAGTGTGTATGATGTGTGCAATTCCTAACCCAG
GGGCGCGAGTGTACTGTGAACAGCAAAATCTGGCTCGCACTTCATATCTC
TGAGTGTCCGCTGCTGTTCCCGGGGCCCTCGAGAAGCTTGTGAGATCCTT
GCCAGGCTATTCTCTCTTCACCCCCTCGTTTTCTAACACTTGCTAAGATG
AAAACGGCTGTGCTGTCTGGTCACTGCCGCAGCGTCGCCCGCACGTCCAC
TTACCTTGCTGCACTCGTCCACCGCACCGTCTGTAGGCTGCTGTCCGCAA
TGCTCACGGACGGTACGGGAAAGGCGCCGGAACAAGTGTGGGCAAAGGCG
GAGCTGAAAAGTGACGCTTCCAATGTGAGCTAGATGTAGTTGTTCGTCTC
CTATTGTCCATGCGAGTAGTAAATGTACTTGAGTGAGTCAGACATGAAAA
CGTTTTGCATGTACAGAGTTCGGTCTCTTGATTTATCCGTCCTCCCCCCC
ACCGTTTCCTCCTTCGGACGCAGCTGTGCCTGTCGATCACCTTGGCGAGG
GACGCTCTTGGCCGCCCCAAGTTTTTCTTATGCCACCTCTTGCCGAATGA
TGACACCGCGTCAGTGGCATCTTGCTCTTCTGGTGTGACTACTTACACTT
CCGATAGCGCCGATTCGAAGGGCACAGATGATGTTGCAAGTAGTAAACGG
AAGATTCCCTAATTGTGATGGATCTTGGCATCTATAGTGGGTGCTCACTC
CCCCTGCTGTTGTTTCGTTGGACTGGCTAACCAGGAGCGGATGGGCCGCG
CTGTAAGGAAGTTTCATGAATCGTAGTTTTTCAAGGGTTTGTGGTTTAGC
TCCTCTCGGTGGATTTGTGAGGTATACAGCGGGGGGGGATGGATATACCT
GTATTGCTCCATATTTCTGTACCAGCGCTGCTGATCCAGGTGCCGCGACG
CGCATGTGAACGTTTTTTAAGAAATAACAGTAACGCCGTTCGGTTAAGGT
CTCATGACAAGCACCAGCAGAATTGCAAGCATTGTTGAAGAAATTAATGA
GCACCATTCGGTTAACGTCTGAGATTGCAATTTCTCCTGCAAATATTGTT
TAGCCGGTTCTCTGTGCTATCCAACGCGCTTTTTTGTGTCCCTCACCTAT
CTTGTAGACGATTTACTTTATCGGTTCATTTTATCTTGTAAATTGTGTGC
CCGGTGGTTTTTGTATGTCATCAGATGTGCTCGGTGGAGAAGATTGCTTG
TGTTATTTAACAGTACTTGTTGTTACTCTTGACCATATGGTGTATTTGTA
TGCATTCTTTTTTATCTAGGGGTGATGTCATAATCGACGCTCGTCTATGT
GATAACGATCTATGGGTGCCTCTCGGGTGTCTGTGCTTGAAGTTCGGTAT
AGAGGGGTGCAGTAAATGTCATGTGGCGTGCGGTAGGTAGTCCATGCTCC
ACCCCGTGCGAGGTGAAGCCTTTTCGGGTACAGGATTTAGTCGCTTTGGT
CTGTGGACCACGGATTGAGTGTTCGCTAATGGGACGACGAGTAAAGATGG
GTCGGGGTAATGATAGATGGCATAGCTCTAGAAGAATATCAAGCTGTAGA
ATGCTGTGGAAAAGCTAGGGATATGTACAGCAGTAGAGATGGGGTTGGCC
TTAGATGGTCGAAATTGAAGCTGGTATCCTGTTGAAAGGACAGACGTATA
CCCTTTGTATGTCTTGGTGCAATGTCGGTATTAGGATTACAGCACCAACC
CCGTGATGAAATGTGAGGAGCTAAGGATTCGAGTCTCAATCGTTTTCAGC
GTAAGAAGTAAGGCATACCAAATAGAGCTCCAATTCGTCTCCGTAATACA
TTCCTGTATAGTCATGAAATGCTGATGACAATCGTCTCAAAAGGTTATGA
GCCTCGCCTGATATACGAGGGTCTCCCGAAGTAACATTTTTCCTTCTAAT
AAAATCCGGGAAAACGTTAATATGCGGCAGAATTTGCCTGAGGACGCGAC
CAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22:538..12690-

>mRNA_H-paniculata_contig22.5812.1 ID=mRNA_H-paniculata_contig22.5812.1|Name=mRNA_H-paniculata_contig22.5812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3516bp|location=Sequence derived from alignment at H-paniculata_contig22:538..12690- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCAAGGTCTCCAGAATTCTGCAAAGCTCCTTGACAAGGCAGTCCA
TTGGCGAGGGGGCACGCCGGGCCATGTGAGGATTCATGCGCAGGGCTCGC
AGATGGGCTCCTCCAGCATGAGCGTGCGTGACAGAAAGATGCTTCAAGGT
CTCCAGAATTCTGCAAAGCTCCTTGACAAGGCAGTCCATTGGCGAGGGGG
CACGCCGGGCCATGTGAGGATTCATGCGCAGGGCTCGCAGATGGGCTCCT
CCAGCATGAGCGTGCGTGACAGAAAGCAACCGCGGGCCGGAGGCGATCAC
GACGACACTGCAAAGCAGGCTACGATCGGCCCCAGGTTTATGCCTGGAAG
ACTTATGGCGGATCAGCTGTTCGGCGGCAACCGCGGGCCGGAGGCGATCA
CGACGACACTGCAAAGCAGGCTACGATCGGCCCCAGGTTTATGCCTGGAA
GACTTATGGCGGATCAGCTGTTCGGCGGAGGCGACGGTCATCATCAATCA
GCAACGACGCCAGCAGCACTGAAACCGCGTGGAAATGTTCAGCCCCCTCT
GCGTGCACAAGGGACCACAACCGACAGCAAATCGTCATCGTCACACTCCC
AAAGCATGGACAGCGCTCAACGCCAATATTCCCAGCAACAATTGCAGCTG
CAGCTGCAGTTACAGCTGCAACTACAGAATCACCTGCTGCAGCAGGCTGC
CACTGCGTCTCTGCTACCCACCGTGTATGGCAACGATATGCGTGACACAG
CCCCAAACGCCTCTATGCTGCTCCCCCCGTGGACAACCAACCAAGCTTGG
CGTTATCCCGTTCCCTTGCCAGCGACAGCGACACCAAGCCTACGAACAGC
GGTGGTAGAGACAACAGTATCCCCTTGTCAGTCGGCAGAGACAACGAACG
CTCCGCTTCAATTGGGCATGCTCGACACAGCAGCCGCCGCGGCCGCCGGC
ATGGGTCTAGGGATTTCTATGGGCCAGGTCCCCGGACATCTCCCATCCGC
GGAGCAGCAGCCGCAGCAACAGCAGCAGCTATCTCTCGAAAACCACTTCA
GAGCAGTAGCAGGTGCGGCCGTAGCACGAGCGGGGGGGATGAGTATCTGT
AGTACTGGAGGGAATAACGGATGGGAGGTGGGAGGGGACGGGCAAATCGG
CGTCGCGACTGTACAGGGTAGCAGCCTGCCGAGTGGCGGCGACGGTGGCG
GCGGTGCCAGCAGCCTTTCATCGTTGTTTCTAACTTCGTCTCCCTCGTCG
ATGAGTTCTTCGCAAGAGTTGGACGCGACTGAGATCAAGCGACAGGAGAG
AAACGCGCGGGAACAACGGAGAGGCGACGGTCATCATCAATCAGCAACGA
CGCCAGCAGCACTGAAACCGCGTGGAAATGTTCAGCCCCCTCTGCGTGCA
CAAGGGACCACAACCGACAGCAAATCGTCATCGTCACACTCCCAAAGCAT
GGACAGCGCTCAACGCCAATATTCCCAGCAACAATTGCAGCTGCAGCTGC
AGTTACAGCTGCAACTACAGAATCACCTGCTGCAGCAGGCTGCCACTGCG
TCTCTGCTACCCACCGTGTATGGCAACGATATGCGTGACACAGCCCCAAA
CGCCTCTATGCTGCTCCCCCCGTGGACAACCAACCAAGCTTGGCGTTATC
CCGTTCCCTTGCCAGCGACAGCGACACCAAGCCTACGAACAGCGGTGGTA
GAGACAACAGTATCCCCTTGTCAGTCGGCAGAGACAACGAACGCTCCGCT
TCAATTGGGCATGCTCGACACAGCAGCCGCCGCGGCCGCCGGCATGGGTC
TAGGGATTTCTATGGGCCAGGTCCCCGGACATCTCCCATCCGCGGAGCAG
CAGCCGCAGCAACAGCAGCAGCTATCTCTCGAAAACCACTTCAGAGCAGT
AGCAGGTGCGGCCGTAGCACGAGCGGGGGGGATGAGTATCTGTAGTACTG
GAGGGAATAACGGATGGGAGGTGGGAGGGGACGGGCAAATCGGCGTCGCG
ACTGTACAGGGTAGCAGCCTGCCGAGTGGCGGCGACGGTGGCGGCGGTGC
CAGCAGCCTTTCATCGTTGTTTCTAACTTCGTCTCCCTCGTCGATGAGTT
CTTCGCAAGAGTTGGACGCGACTGAGATCAAGCGACAGGAGAGAAACGCG
CGGGAACAACGGAGGTCTTTGAGAACGTCGCAGCAATTCGACAAACTCCG
GGCGTTGCTCGTGGAAAGCGGCATCGAGCCCAAGTCGACCAAATCCAGCG
TGCTGATCGAGGTGGCAAACCTAATCCACCAACTCGAAGACCGACTAGAG
GGATTAGAACAAGACCGGCAGAAGTCTTTGAGAACGTCGCAGCAATTCGA
CAAACTCCGGGCGTTGCTCGTGGAAAGCGGCATCGAGCCCAAGTCGACCA
AATCCAGCGTGCTGATCGAGGTGGCAAACCTAATCCACCAACTCGAAGAC
CGACTAGAGGGATTAGAACAAGACCGGCAGAAGTGGATGTCAGACACTGC
AGACGTACCGGACGTTGCCCGAGAAGATCCCAACGGCGGCGCTATCGATT
GCAAACAGGTGGATGTCAGACACTGCAGACGTACCGGACGTTGCCCGAGA
AGATCCCAACGGCGGCGCTATCGATTGCAAACAGGTTTTCGCCCACGCAA
GCGTGGCCTTAGCGATGGCCAATGTGGAAGGTCGTTTGATGGAGAGCAAC
CTTCAATTCGAGGCATTAAGCGGGTACTCTAGAGACGAGCTCAAGCAGCT
CACTTTGCTCAGCCTGGCGGGTCCATCGGACTTATCAAAAACTTTCGAGT
TTTCGCCCACGCAAGCGTGGCCTTAGCGATGGCCAATGTGGAAGGTCGTT
TGATGGAGAGCAACCTTCAATTCGAGGCATTAAGCGGGTACTCTAGAGAC
GAGCTCAAGCAGCTCACTTTGCTCAGCCTGGCGGGTCCATCGGACTTATC
AAAAACTTTCGAGCTGCTGTCCGCAATGCTCACGGACGGTACGGGAAAGG
CGCCGGAACAAGTGTGGGCAAAGGCGGAGCTGAAAAGTGACGCTTCCAAT
GCTGCTGTCCGCAATGCTCACGGACGGTACGGGAAAGGCGCCGGAACAAG
TGTGGGCAAAGGCGGAGCTGAAAAGTGACGCTTCCAATCTGTGCCTGTCG
ATCACCTTGGCGAGGGACGCTCTTGGCCGCCCCAAGTTTTTCTTATGCCA
CCTCTTGCCGAATGATGACACCGCGTCAGTGGCATCTTGCTCTTCTGGTG
TGACTACTTACACTTCCGATAGCGCCGATTCGAAGGGCACAGATGATGTT
GCAAGTAGTAAACGGAAGATTCCCTAACTGTGCCTGTCGATCACCTTGGC
GAGGGACGCTCTTGGCCGCCCCAAGTTTTTCTTATGCCACCTCTTGCCGA
ATGATGACACCGCGTCAGTGGCATCTTGCTCTTCTGGTGTGACTACTTAC
ACTTCCGATAGCGCCGATTCGAAGGGCACAGATGATGTTGCAAGTAGTAA
ACGGAAGATTCCCTAA
back to top