mRNA_H-paniculata_contig21993.5811.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21993.5811.1
Unique NamemRNA_H-paniculata_contig21993.5811.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21993.5811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21993contigH-paniculata_contig21993:2281..4273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size194
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21993.5811.1prot_H-paniculata_contig21993.5811.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21993 2281..4273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.9704397-CDS-H-paniculata_contig21993:2280..23041622929601.9704397-CDS-H-paniculata_contig21993:2280..2304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21993 2281..2304 -
1691480931.204892-CDS-H-paniculata_contig21993:2280..23041691480931.204892-CDS-H-paniculata_contig21993:2280..2304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21993 2281..2304 -
1622929601.9948196-CDS-H-paniculata_contig21993:3006..30741622929601.9948196-CDS-H-paniculata_contig21993:3006..3074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21993 3007..3074 -
1691480931.215615-CDS-H-paniculata_contig21993:3006..30741691480931.215615-CDS-H-paniculata_contig21993:3006..3074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21993 3007..3074 -
1622929602.0102313-CDS-H-paniculata_contig21993:4173..42731622929602.0102313-CDS-H-paniculata_contig21993:4173..4273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21993 4174..4273 -
1691480931.2230177-CDS-H-paniculata_contig21993:4173..42731691480931.2230177-CDS-H-paniculata_contig21993:4173..4273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21993 4174..4273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21993.5811.1

>prot_H-paniculata_contig21993.5811.1 ID=prot_H-paniculata_contig21993.5811.1|Name=mRNA_H-paniculata_contig21993.5811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MLTGAGCGDCSDVVGCEGGRRGGTSGGHGTPSAGITRGTRPRSRPDASKQ
HIDEPHWPPQPEQP
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mRNA from alignment at H-paniculata_contig21993:2281..4273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21993.5811.1 ID=mRNA_H-paniculata_contig21993.5811.1|Name=mRNA_H-paniculata_contig21993.5811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1993bp|location=Sequence derived from alignment at H-paniculata_contig21993:2281..4273- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTACAGGAGCGGGGTGTGGCGACTGCTCGGATGTTGTTGGATGCGA
AGGCGGAAGACGAGGAGGCACAAGCGGCGGCCACGGCACGCCGTCCGCAG
GTAACCAACTGGCTAACTGTAATGAGTGTATAATCACACCCAAAAGACAA
TCGAACAAAAACGCTAACTTGCTCGAAGGGTCGATGATGAACGGCGAAGA
ACCGATGAGAGGGTTTGCACTTGAGGTTACATCTCATGTTCGCGCTCACT
TCCTTTCGGCAGCCCTTGGTTGATATTTATTTCTTGAGTATTCGGGGTTG
GGAACCTGTTGGTTCGGATCCGCTCTAGTCTGCGCTCAGCACTGCACTGC
TGATATAGTGTGTTGTACTGCACTGTAATGTACTGTACTGTACTGTACTG
TACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTATCA
TGTGAATGTTTTGATGAACAACATCTATTTCTTGTACATTTTTTCCTTTC
TTGTTTCGCCTTTCCCGTCACCTTGGCGTACCGAAATCAATTACACACAC
GCCCATGCTACATTATATAATGCTTGAACAATAGTTTTACATTTTCTTGT
CGAGACGGATTGATCTGTACATCAAGGGGAGTTTGCTGTTCGTCGTATCC
GTTATGATGTTGGAGGATGATTTTGGCGACTCCTTGGTTTGGCCGAAATC
GCCGTCGTCGAACACAATCCTTGTTACCTCACCCTGCATGATTGTTTTCG
CGGAAAAGGAACAAGCACGGCTTTATATGTGAGGCCAATTCCCCCCCCCC
TAATCCTTGGAGATTATTTCAAATACTTGGATCGAATTTGCGCAAAAGAG
CTTGAGTGGGACTGACATTCTTCTCTGGAGGAGATCGTTTCAAGTCCGGT
GTTGGAAAATTAGAGGATCTCGTAGTCTGGCGTTTGAAAGAAAACTGAAT
GTTGACGAGAGCTGTATTTCTGGAAGCACGGGTCGAAAAGTAACAATGTA
ATCTCATGATTTGACCCACCTGAAACACTGAAGCATTTTGAAACAGTTTA
TTCATGGTATGTGCCGTGAAAAGGCACGACCCGTCCCAAAACAGTCCCGA
ACTTGGATGTATAACATACGCGGAAGTTATTGTTCGTAGATACCGTTACG
TCAATAATGTGTGTGGCCATTGACGATATATTGTGTTTCCTGTATCCAGG
GATCACCCGGGGCACCAGACCAAGGTCTAGGCCTGACGCTTCAAAGCAAC
ATATCGACGAGCCTCATGTGAGCAGCGGTGGAAATTGCTCTGCGTGGTGT
GCAGTATGTGTTCTCTTTTTCAGACGGACAGCTTAGGAAATTCTATCGCA
CGCACAGCCCATTATGCAATGTTAAATACAGTGCATGGTAAAGGATCCGG
AAATATGTGCGGGGTGGTCACGTAGATTCGGAGGCATGGATAAAGCACTA
CTATCGAGGCGGGGTAGCGGGTGGTGGAAGTTGTTTTAGTACGCGTGAGA
AGAGATAATCTGGTTGGTTCACGTGTGTTGAATCTATGTGATGTGTTTGT
TGGAGTGATAGTATCAAGAGCTGAACTAGCTATGAAAGAAACTTGGGGCA
AGAGAGCCAGACTGGAAAACGTCCGGGAAGTGAGGTTCTGCTTTGCCACA
ATGAATATGTATCATCAGGATAAAATGCCATTTATTGTAGATGATGATGC
ATTATTGTTGTTTTCGAGCAAGTCGCTGCGCTACCCCGCTACCGCTATAC
CCCTTGTGCGTTAACGGAAGAGCCGACGAAAGGGGCCTCCTGTGTTGAGC
AATGGTATTGATATTGAAGTCACGGAACAGGCTATACTCGATTGGGGTTG
GCTGGTAAACACAGATCATGAACAGTCATGGCGTCGCCTGTACGCCGATG
TACATGCGTCTTGTACGCTCATTTTCGTTGTAAACTCGTTCCTCTATCGT
TGTTGACCGTTACGCACAGTGGCCTCCACAACCCGAACAACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig21993:2281..4273-

>mRNA_H-paniculata_contig21993.5811.1 ID=mRNA_H-paniculata_contig21993.5811.1|Name=mRNA_H-paniculata_contig21993.5811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig21993:2281..4273- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTACAGGAGCGGGGTGTGGCGACTGCTCGGATGTTGTTGGATGCGA
AGGCGGAAGACGAGGAGGCACAAGCGGCGGCCACGGCACGCCGTCCGCAG
ATGCTTACAGGAGCGGGGTGTGGCGACTGCTCGGATGTTGTTGGATGCGA
AGGCGGAAGACGAGGAGGCACAAGCGGCGGCCACGGCACGCCGTCCGCAG
GGATCACCCGGGGCACCAGACCAAGGTCTAGGCCTGACGCTTCAAAGCAA
CATATCGACGAGCCTCATGGATCACCCGGGGCACCAGACCAAGGTCTAGG
CCTGACGCTTCAAAGCAACATATCGACGAGCCTCATTGGCCTCCACAACC
CGAACAACCGTGGCCTCCACAACCCGAACAACCG
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