mRNA_H-paniculata_contig21973.5806.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21973.5806.1
Unique NamemRNA_H-paniculata_contig21973.5806.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21973.5806.1 vs. uniprot
Match: D7G298_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G298_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.250e-23
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:   46 RRRSPLDTGLEKITVVASSFAWMHTKHCVKGIQRRALLHGEFKEQLQMTLHIYLRPAEAVAVAEFFDPDNTGFVNGEYFVR 288
            +++S L++GL K+T+ ASSFAWMH K C++G QR  +L  EF+EQLQM+LHIYLRP+E  AVA FFD    G VNGE FVR
Sbjct:   37 KKQSALESGLAKLTLCASSFAWMHGKQCIRGFQRVQMLPAEFREQLQMSLHIYLRPSEGAAVARFFDVQQVGSVNGEVFVR 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21973.5806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G298_ECTSI1.250e-2360.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21973contigH-paniculata_contig21973:2..3907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue1e-06
Seed eggNOG ortholog2880.D8LJJ2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF-hand domain pair
EggNOG OGs2D6PM@1,2T2J6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1092
Cds size435
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929600.8208134-UTR-H-paniculata_contig21973:1..1451622929600.8208134-UTR-H-paniculata_contig21973:1..145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21973 2..145 +
1691480930.9045942-UTR-H-paniculata_contig21973:1..1451691480930.9045942-UTR-H-paniculata_contig21973:1..145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21973 2..145 +
1622929600.8344238-UTR-H-paniculata_contig21973:844..9871622929600.8344238-UTR-H-paniculata_contig21973:844..987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21973 845..987 +
1691480930.9138887-UTR-H-paniculata_contig21973:844..9871691480930.9138887-UTR-H-paniculata_contig21973:844..987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21973 845..987 +
1622929600.8521976-UTR-H-paniculata_contig21973:1399..14561622929600.8521976-UTR-H-paniculata_contig21973:1399..1456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21973 1400..1456 +
1691480930.9237316-UTR-H-paniculata_contig21973:1399..14561691480930.9237316-UTR-H-paniculata_contig21973:1399..1456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21973 1400..1456 +
1622929601.1451368-UTR-H-paniculata_contig21973:3594..39071622929601.1451368-UTR-H-paniculata_contig21973:3594..3907Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21973 3595..3907 +
1691480930.9563472-UTR-H-paniculata_contig21973:3594..39071691480930.9563472-UTR-H-paniculata_contig21973:3594..3907Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21973 3595..3907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.0655394-CDS-H-paniculata_contig21973:1456..15871622929601.0655394-CDS-H-paniculata_contig21973:1456..1587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21973 1457..1587 +
1691480930.9320335-CDS-H-paniculata_contig21973:1456..15871691480930.9320335-CDS-H-paniculata_contig21973:1456..1587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21973 1457..1587 +
1622929601.116333-CDS-H-paniculata_contig21973:2480..26271622929601.116333-CDS-H-paniculata_contig21973:2480..2627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21973 2481..2627 +
1691480930.9402423-CDS-H-paniculata_contig21973:2480..26271691480930.9402423-CDS-H-paniculata_contig21973:2480..2627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21973 2481..2627 +
1622929601.1305366-CDS-H-paniculata_contig21973:3437..35941622929601.1305366-CDS-H-paniculata_contig21973:3437..3594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21973 3438..3594 +
1691480930.9485893-CDS-H-paniculata_contig21973:3437..35941691480930.9485893-CDS-H-paniculata_contig21973:3437..3594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21973 3438..3594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21973.5806.1prot_H-paniculata_contig21973.5806.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21973 1457..3594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21973.5806.1

>prot_H-paniculata_contig21973.5806.1 ID=prot_H-paniculata_contig21973.5806.1|Name=mRNA_H-paniculata_contig21973.5806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MQREAKARRNMENKAAIAVEFSQADEQEVLTILAKVALSYHDQRTGRDAA
QREFTCALAPDDFREQLHLSFGLRLTDAQFSALFHTMDTNSDGYVDGAEF
LHFFFGLGNGERAREQKQHEVNCQVRAQKLRLDKFPAISPFLGR*
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mRNA from alignment at H-paniculata_contig21973:2..3907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21973.5806.1 ID=mRNA_H-paniculata_contig21973.5806.1|Name=mRNA_H-paniculata_contig21973.5806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3906bp|location=Sequence derived from alignment at H-paniculata_contig21973:2..3907+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGTTCAGCGCTCTGTGGTATGGGCTCGAAAATCAGCAAACGGCGAAG
ACGTTCTCCCCTTGACACGGGCCTGGAGAAAATCACCGTCGTCGCATCGT
CTTTTGCTTGGATGCACACGAAACACTGCGTTAAGGGGATCCAGGTAAGT
TCTGTTCTCCTGCTGGCTTTGCGATCCTCTTGGATGGGAAGACTGGGTGA
CCGCGAAGGTTGGCTCCTACTGATTGTACGGGCGAAACAAGATTCTTATC
ACCATGAAACGTTCAATAACTCATGCCATGTATACCTTCGAATGTCGAGC
ACATTGTGACTGTACAATTGTCGTAATGTGTGCACTACAGTGCACTGTGC
CCCTTACTAATCAACTTTGCTGCCTTATTTGGGAGACGTATTCATGCATC
TTGTCTTTTGTCATTATACCCAGTAACCAATGACTGGTACTATCCGTTCC
CCTACCCAATGCCTCATAAGAAGCTGATACCTTGGTCTGCAGTATCGGAG
AGACTTGACTCCAACGATAGTATCTTGCCCCTAGAAAGGGAATAGCCGGA
TCATCATCTCAAGTCCAGATTATCAGGTGTCAAGTAGGAGCAGAAGCTGT
ATTATCGTAGACACCTCGTCTCGACATTAAATAGCGCAACTAGTGACACG
TAACACTCTACGGCAATACTTTATATCTCCACATTGTACATATCACATTT
AGTGTGAACCGCTGCACAATATATATACTGGAGTATATATCAGTTAACTG
GTCGGGCGAAATGTTGTTGAGTGTTCTCACGACGAGCACTATCTGTCCTT
CTCCTCCATCGAACACACGCGCCCATGTTCTTCCTCACAAAAGCGCCGTG
CCCTTCTTCACGGCGAGTTCAAGGAACAACTGCAAATGACACTGCACATT
TATCTCCGACCCGCAGAGGCCGTGGCGGTCGCAGAATTTTTCGACCCTGA
CAATACTGGTTTCGTGAACGGAGAGTACTTCGTCAGGTGGTTCTTGCACA
TCGGGAACAAGCGTCGGGAGGTAGACAGACTGGGTAGTATTGACGGAAGT
TGACGAGAGCTAGAAGGCTGTCAAGAAGAGAGGCGGAAAGGGGAAAATGG
GCCGGTTGCACATAGTCGGAAAACCCTCAGTCGTTTTCGTCAATGTATGT
TGTATTTTTTTCTATTTTGCGCTAGTAGTACCCACACACAAGGTTATCGA
CACAACGAAATAGCGAAAAGGTCAGATTTATTTCCTGTCCTGACGAGGAC
CGGGATGAAATTCGGGCGATTGAAGTCTGGCTATGAAGGCTAGATCCCGC
GAGAGGTGGTGAAGTGGCTCATATCCAATTGTGACTATTAGCGCATATCT
CCCGCATGATGAAGAGCTGTCCTCCCTATTCTGTTCCTGCCACACCAGGA
GCGACTGGGAAGGCAAGTCGCCCAGCGAGACGAAGAGCAGAGACAGCAAC
GCGAGATGCAGCGCGAGGCAAAAGCTAGGCGAAACATGGAGAATAAAGCA
GCAATTGCGGTTGAGTTTTCTCAAGCGGACGAACAGGAGGTCCTGACCAT
ACTCGCGAAAGTGGCTCTCTCCTATCATGACCAGAGGTGAGGTTGGTAAA
AAGCAAGTGACATGATCCAAGCTCATGCATGGGTGGCGAAGCACGACTCT
ATATGGCTATGATATCTTGGGGTGTGCGCCTGTGGAGACTGTTGAGGAGT
GTTTCGACGTTTAGGTTCAACGACGGAAAAAACCGATGATCGCCACCTCA
TCAGTGGAAACGTATGGATAAAAAGCTGCATAATGCTGGTGATTTCGGGA
CAGGGTCGGGAGTGAGGATCGAGAAGCCACCTGCAGTTGATGTACTCGAG
CTGCTGCGCACGCGGCGTAACAGAACCGCACGCAGACAGATGGAGGTGGT
TGAAACGATCAAATGTTCCACCCCCCGGACAAATACGAATGGAGCATTCG
CGACTATCTCGAACTATCATTATTTGTCTTGGGTGAACACGTATCTATTC
GTTTACAAGTCTATGAATGATCACTGTACAAATGGTCACCAGGTGGTCAT
ATACCCGGCGAACAGTCACACATGTAGGTCCTGTTATTTTCTGGATGGTA
CTGTACAGATTGAATACTCTATCTGCCCGAGGTTTTGGATGCTCCATGGT
ACTGCATAGTATTCGCATCACATGGACGTCTTCCCCACCTCAAACAGATA
CGGTATCCATTCCAGATTTCTCGTATTTATTCGTGTCTTGTATTCATATT
TATCCTAGGGGTGAAAATTTTCCTGCATGTAATTTTCGGCATGTTGTATA
CAGTGGCAATGAAGCACATGCATGACCTCTGCAGACGAATGAAATGCTTC
CTTTCCACTAACATTGATTTTCGCCGAAGGCGTCGTTGGCAGTATACTTA
CTGCAGCTTACGAGCAGCGGACATGTATAAATATCGTAGTAAGGATGTAT
AATTTTTAAGAATCCCCATGCTTTTCCAGGACCGGCCGAGATGCAGCTCA
ACGAGAATTCACCTGCGCCCTGGCACCTGATGATTTCCGAGAGCAGCTGC
ATTTGTCCTTCGGATTGCGATTGACTGACGCACAGTTCTCCGCTCTTTTC
CATACGATGGACACAAATAGCGATGGGTGAGTAGGCGGAATATTCAGCCG
AGTCTTATTGTTTACACGGAGGCGTTTTTACCGTCGTCGTGCCATGTACA
CTTGTGCAAAAGGGGAGAAAAAACACTCGCGGGGAACACAGTTTCAACAC
CATGTAGCAATACCAACACTGACCAACAAGATAGCACGCTGCATGCTAGC
AAGCTGCTTTTTGTTTGCATGTTTCTGCTCGTTACAGTATCCCTTCCCCG
AAAATATAAAGTATGTGTGCAACGACCACGCGGCCCATGAATGACAGGCA
TGAGCAAATCACCATACGAAGCGAAAACAGTTAGTGGATGCTACCTCAAT
ATGGCCAACACAAGATAGAGTCATCTTACGGTAGGGGGGTACCAGTATAT
TTCACATCGAGGTTCGCGCGTCACTCGTGGGAATGATCATATCTCAATCT
CTAATTTGGGATTGAAAATATTCAATGTTGGATTCACCCACTTCCCTCCA
AGTACGAATTAAAACGAAAAAAAACATAACAAGTTGATCTGGTCGATATA
TATATTGGTTAGTCACTCGTGAGACTGACGATCCCCCTATCGTAGGACGA
CTAGATAGTATATACACTCATCAACCAAAGCGGTGAAACCCATCGTGGGA
AATGTGCACACTCTTAGTGGTACTCAAGAACTGCGGCACACTCTTGATAC
TCAAGAGTTACGCACTTTTATCTATGCCAAGACTAATCAGTCACCCTGCG
CCCTCACTTCCCCTCGGCCCCGCTTCCGTACGCGTGACTTCAAACCTCCA
AAAAATCTCGATTTCCGACGAACCGCCACGCGAAAGGTACGTTGATGGTG
CCGAGTTCTTGCACTTCTTTTTCGGTTTGGGAAACGGAGAGAGGGCGAGA
GAGCAGAAGCAGCACGAAGTCAATTGCCAGGTTCGCGCCCAGAAACTGAG
ACTGGACAAGTTTCCGGCAATATCGCCATTCCTGGGGCGCTGATACAAAA
TAGTCGTGCTTCGTATTTTGGTGGCCGTGCATGCGTTGGTCCCTACGTAG
TTGTCTGCTTCCTACTCAATCAGGCTGGTCAGATAAACACTAGCAATCAC
GTATGGAGGCTGACGTGGAGGATTTACTTCTGTTTCCGGGCCAAGGGGAT
GGACTGATAAAGCCCCCTCTGGAAAATTCGCGTTGCTGGAAGTTGGGAAC
TGTCCCTAACCGGAACCACTAATGCCGCTAGTTTGTTTGTCGGCGTGCAA
GGCCATTACGGTGTGGTAGATGCCAAAACCCAACTGCAGGTACGCTTCAA
ACTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig21973:2..3907+

>mRNA_H-paniculata_contig21973.5806.1 ID=mRNA_H-paniculata_contig21973.5806.1|Name=mRNA_H-paniculata_contig21973.5806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig21973:2..3907+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGCGAGGCAAAAGCTAGGCGAAACATGGAGAATAAAGCAGCAAT
TGCGGTTGAGTTTTCTCAAGCGGACGAACAGGAGGTCCTGACCATACTCG
CGAAAGTGGCTCTCTCCTATCATGACCAGAGATGCAGCGCGAGGCAAAAG
CTAGGCGAAACATGGAGAATAAAGCAGCAATTGCGGTTGAGTTTTCTCAA
GCGGACGAACAGGAGGTCCTGACCATACTCGCGAAAGTGGCTCTCTCCTA
TCATGACCAGAGGACCGGCCGAGATGCAGCTCAACGAGAATTCACCTGCG
CCCTGGCACCTGATGATTTCCGAGAGCAGCTGCATTTGTCCTTCGGATTG
CGATTGACTGACGCACAGTTCTCCGCTCTTTTCCATACGATGGACACAAA
TAGCGATGGGACCGGCCGAGATGCAGCTCAACGAGAATTCACCTGCGCCC
TGGCACCTGATGATTTCCGAGAGCAGCTGCATTTGTCCTTCGGATTGCGA
TTGACTGACGCACAGTTCTCCGCTCTTTTCCATACGATGGACACAAATAG
CGATGGGTACGTTGATGGTGCCGAGTTCTTGCACTTCTTTTTCGGTTTGG
GAAACGGAGAGAGGGCGAGAGAGCAGAAGCAGCACGAAGTCAATTGCCAG
GTTCGCGCCCAGAAACTGAGACTGGACAAGTTTCCGGCAATATCGCCATT
CCTGGGGCGCTGAGTACGTTGATGGTGCCGAGTTCTTGCACTTCTTTTTC
GGTTTGGGAAACGGAGAGAGGGCGAGAGAGCAGAAGCAGCACGAAGTCAA
TTGCCAGGTTCGCGCCCAGAAACTGAGACTGGACAAGTTTCCGGCAATAT
CGCCATTCCTGGGGCGCTGA
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