mRNA_H-paniculata_contig21962.5803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21962.5803.1
Unique NamemRNA_H-paniculata_contig21962.5803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Match: A0A6H5KPV9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPV9_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 2.940e-70
Identity = 101/135 (74.81%), Postives = 115/135 (85.19%), Query Frame = 1 
Query:    1 SGKHGTQVTPNGAMVWDGNGWLALVDDDSDIKPPPPKTESWKQEGTTLFVGVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQNDHEDVDCVTEYCKLMGSQ-EGESCPYFNNIKTIRVEAKLAAGPCYGRHLQ 402
            +G    +VTPNGAMVWDGNGW+AL DDD   +PPPPKT SWK+  T++FVGVSSFRDKRCPQTLVN+F KAKYP R+T+GVVQQNDHEDVDCV EYCK+MG   EG  CPYF+NIKT+RVEA+ AAGPCYGRHLQ
Sbjct:   33 AGPAAAKVTPNGAMVWDGNGWIALWDDDEAPRPPPPKTTSWKRSDTSIFVGVSSFRDKRCPQTLVNFFSKAKYPERITVGVVQQNDHEDVDCVVEYCKMMGGHAEGPLCPYFDNIKTLRVEARWAAGPCYGRHLQ 167
[Close]
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Match: A0A835ZER6_9STRA (GlcNAc-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER6_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.490e-50
Identity = 83/134 (61.94%), Postives = 97/134 (72.39%), Query Frame = 1 
Query:   22 VTPNGAMVWDGNGWLALVDDDSDIKPPPPKTESWKQEGTTLFVGVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQND-HEDVDCVTEYCKLMGSQE------GESCPYFNNIKTIRVEAKLAAGPCYGRHLQ 402
            + P GA VWDGNGW ALVDDDS  KP PP +ES+K    T+F+GVS+FRDKRCP+TL NYF KAK P+RL +G+VQQN   ED DC+  YC LM + E      G+ CPY   IK  RVEAKLAAGPCYGRH+Q
Sbjct:    2 LVPTGAKVWDGNGWNALVDDDSLPKPHPPHSESYKDPNATIFIGVSAFRDKRCPKTLYNYFSKAKNPHRLRVGLVQQNSISEDPDCLQGYCDLMKADEKFATKFGDKCPYKEQIKITRVEAKLAAGPCYGRHMQ 135
[Close]
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Match: A0A7S3YLX0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLX0_HETAK)

HSP 1 Score: 138 bits (348), Expect = 9.090e-36
Identity = 61/133 (45.86%), Postives = 90/133 (67.67%), Query Frame = 1 
Query:   40 MVWDGNGWLALVDDDSDIKPPPPKTESWKQEGTTLFVGVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQNDH-EDVDCVTEYCKLMGS-----------QEGESCPYFNNIKTIRVEAKLAAGPCYGRHLQ 402
            M +DG GW+ L+++     P PPK++SWKQ+ TT+FVG+++FRD RCP+TL N F KAK P+R+ +G+VQQ D  +D DC+ +YC+LMG+           +  ++CP+F  ++  RV   LA GP +GRHLQ
Sbjct:    1 MAYDGIGWIPLIEEPRPPLPYPPKSDSWKQDNTTIFVGIAAFRDSRCPKTLFNMFTKAKNPDRVFVGLVQQWDETKDTDCIEKYCELMGAAVAGQDQAADRRRAQACPHFEQVRIHRVSHLLARGPTFGRHLQ 133
[Close]
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Match: A0A7S2XXE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXE5_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.110e-35
Identity = 58/117 (49.57%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:   61 WLALVDDDSDIKPPPPKTESWKQEGTTLFVGVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQNDHEDVDCVTEYCKLMGS----QEGESCPYFNNIKTIRVEAKLAAGPCYGRHL 399
            W+ L +  +  +P PPK++S+ +  TT++ G++SFRD RCP+TLVN F+KAKYP R+ +G+VQQN  +DVDC+ EYC  MGS    ++   CPY++ I+ +RV A+ A GP YGRHL
Sbjct:   44 WVVLKE--TGPQPHPPKSDSYTRSDTTIWNGIASFRDSRCPRTLVNLFQKAKYPERVYVGLVQQNGDDDVDCLEEYCNRMGSTNRKEDEAKCPYYSQIRILRVHAREARGPTYGRHL 158
[Close]
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Match: A0A7S3UPC0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPC0_HETAK)

HSP 1 Score: 127 bits (319), Expect = 6.810e-34
Identity = 65/147 (44.22%), Postives = 85/147 (57.82%), Query Frame = 1 
Query:    7 KHGTQVTPNGAMVWDGNGWLALVD-DDSDIKPPPPKTESWKQEGTTLFVGVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQNDHEDVDCVTEYCKLMG-------------SQEGESCPYFNNIKTIRVEAKLAAGPCYGRHLQV 405
            K G          WDG  +  LV+  D +  P PPK E++  + TT++VG+S FRD RCP+TL N + KA+ P R+ +G+VQQN   DVDCV +YC+LMG             + EG  CPYF  I+  RV   LA GP +GRHLQV
Sbjct:   20 KKGVPPKKGQPTAWDGKDFFPLVEAPDPNFIPHPPKDENYSSKDTTIYVGISGFRDSRCPKTLYNLYTKAENPARVFVGLVQQNAEGDVDCVDKYCELMGYRGQKTDAARARPAAEG-GCPYFAQIRANRVSHLLARGPTFGRHLQV 165
[Close]
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Match: A0A7S2UY74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY74_9STRA)

HSP 1 Score: 116 bits (291), Expect = 7.990e-30
Identity = 58/131 (44.27%), Postives = 74/131 (56.49%), Query Frame = 1 
Query:   94 KPPPPKTESWKQEGTTLFVGVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQNDHEDVDCVTEYCKLMG--------------------------SQEGESCPYFNNIKTIRVEAKLAAGPCYGRHLQVD 408
            +P  PK ES+K    T+FVG++++RD RC +TL N F KAKYP+RL IG+V QND  D DCV  YCKLMG                          +    +CP+F+ IK  RV  KLA GP +GRHLQ +
Sbjct:    6 RPYAPKDESYKDPDKTIFVGIAAYRDTRCAKTLYNMFTKAKYPDRLRIGLVWQNDVTDADCVEGYCKLMGHDPNPAGPPKKAPVAGLPPEPGAQADADMSRNCPHFHQIKVHRVTHKLAVGPTFGRHLQSN 136
[Close]
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Match: A0A4D9CSP2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSP2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.090e-25
Identity = 54/131 (41.22%), Postives = 78/131 (59.54%), Query Frame = 1 
Query:   31 NGAMVWDGNGWLALVDDD--SDIKPPPPKTESWKQEGTTLFVGVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQNDHEDVDCVTEYCKLM-------GSQEG-ESCPYFNNIKTIRVEAKLAAGPCYGR 393
            N  M +DG  W  L +D    +  P PP ++SW++  TT+ V +SSFRD RCP+TL N F KAK+P R+ +GVVQQN+ +DV     +   +       G+Q   ++CP+ + +K +RV A  A GP YGR
Sbjct:   33 NRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDVGGARPFTPRLKPPTAAAGAQTILQNCPHADQVKMMRVPASGAKGPTYGR 163
[Close]
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Match: I2CQ75_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ75_NANGC)

HSP 1 Score: 100 bits (249), Expect = 1.660e-24
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:  136 TTLFVGVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQNDHEDVDCVTEYCKLMGSQEG------------------ESCPYFNNIKTIRVEAKLAAGPCYGRHL 399
            TT+ V +SSFRD RCP+TL N F KAK+P R+ +GVVQQN+ +DVDC+  YC ++  + G                  ++CP+ + +K +RV A  A GP YGR+L
Sbjct:    2 TTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDVDCLYTYCSMIKEERGLHPLAQAPTSSRGAQTILQNCPHADQVKMMRVPASGAKGPTYGRYL 107
[Close]
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Match: X6MBF3_RETFI (Uncharacterized protein n=2 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MBF3_RETFI)

HSP 1 Score: 102 bits (253), Expect = 1.560e-22
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:   94 KPPPPKTESWKQEGTTLFVGVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQNDHEDVDCVTEYCKLMGSQEG----------------ESCPYFNNIKTIRVEAKLAAGPCYGRHLQ 402
            KPPPP  + +K+  T + V ++S+R+ RC  TL N+F KA +PNR+ IGVVQQN+  D DC  EYCK +   +                 + CP+ +NIK  R+ A+ A GP Y R  Q
Sbjct:   49 KPPPPYDDQYKRNDTKIMVLIASYRETRCKDTLYNFFTKAAFPNRVFIGVVQQNEKSDPDCYVEYCKRIMENDQVVPEKELSDDEKNWRIKDCPFSDNIKMFRMNARDAKGPVYARAQQ 167
[Close]
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Match: A0A7S3GTT6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTT6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.330e-22
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:  103 PPKTESWKQEGTTLFVGVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQ--NDHEDVDCVTEYCKLMGSQEGESCPYFNNIKTIRVEAKLAAGPCYGRHLQ 402
            PP +ESWK     +FVG+ S+RD+RC QTL N F KA++P+R+ +GVV+Q   + +   C+ +YCKL  +    +CP+ + I  I++   +A GP Y R++Q
Sbjct:   81 PPVSESWKDPTAEIFVGIVSYRDRRCSQTLANLFDKAEFPDRVRVGVVEQVQTEEDSFSCIVDYCKLKRASIDHNCPHRDQISIIQLTHNVARGPNYARYMQ 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21962.5803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV9_9PHAE2.940e-7074.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZER6_9STRA3.490e-5061.94GlcNAc-domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S3YLX0_HETAK9.090e-3645.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XXE5_9STRA1.110e-3549.57Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3UPC0_HETAK6.810e-3444.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UY74_9STRA7.990e-3044.27Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CSP2_9STRA2.090e-2541.22Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
I2CQ75_NANGC1.660e-2443.40Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
X6MBF3_RETFI1.560e-2240.34Uncharacterized protein n=2 Tax=Reticulomyxa filos... [more]
A0A7S3GTT6_9STRA2.330e-2241.18Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21962contigH-paniculata_contig21962:397..3233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.3
Seed ortholog evalue4.5e-57
Seed eggNOG ortholog2880.D7G1A5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyltransferase (GlcNAc)
EggNOG OGs2CXJN@1,2RY14@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929600.130127-CDS-H-paniculata_contig21962:396..6371622929600.130127-CDS-H-paniculata_contig21962:396..637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21962 397..637 -
1691480930.75387-CDS-H-paniculata_contig21962:396..6371691480930.75387-CDS-H-paniculata_contig21962:396..637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21962 397..637 -
1622929600.1480045-CDS-H-paniculata_contig21962:3057..32331622929600.1480045-CDS-H-paniculata_contig21962:3057..3233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21962 3058..3233 -
1691480930.7630332-CDS-H-paniculata_contig21962:3057..32331691480930.7630332-CDS-H-paniculata_contig21962:3057..3233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21962 3058..3233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21962.5803.1prot_H-paniculata_contig21962.5803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21962 397..3233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21962.5803.1

>prot_H-paniculata_contig21962.5803.1 ID=prot_H-paniculata_contig21962.5803.1|Name=mRNA_H-paniculata_contig21962.5803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
SGKHGTQVTPNGAMVWDGNGWLALVDDDSDIKPPPPKTESWKQEGTTLFV
GVSSFRDKRCPQTLVNYFKKAKYPNRLTIGVVQQNDHEDVDCVTEYCKLM
GSQEGESCPYFNNIKTIRVEAKLAAGPCYGRHLQVDRR*
back to top

mRNA from alignment at H-paniculata_contig21962:397..3233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21962.5803.1 ID=mRNA_H-paniculata_contig21962.5803.1|Name=mRNA_H-paniculata_contig21962.5803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2837bp|location=Sequence derived from alignment at H-paniculata_contig21962:397..3233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGGAAAACATGGAACTCAGGTTACACCCAATGGCGCCATGGTGTGGGA
CGGCAACGGTTGGCTCGCGCTGGTGGATGATGACTCGGACATAAAGCCAC
CGCCTCCAAAGACCGAATCCTGGAAGCAGGAAGGGACTACCCTTTTTGTT
GGGGTATCTTCGTTCCGCGACAAGCGGTGCGTCTATGTAAACAAGATATT
CGTTTCTATTCAGTCATCATTTAGTGCCGATTATAACCAGTCAGTGAGTA
CGTTGCGTTATGATATAGTTAGTATGAGGTGTAGTTGTAATTTCGAAATC
CCTCTTGTATATCGTAGCTCGATTTATATTTAGCAGACTGTGCTACTAAG
CTGTCCATACTTGATTTTAGAATACACACAACTTGGAAAACAACCAAACA
TGCGTTACATGGGCGAGATAAATGAAGTTTTGGAATTACTTTGGGAGATT
TGATGAAAATGAAAGCAACAACCCTAAATCTCTAATCATTTGTTATGTTT
AATATGACATTTATGTAAAGCGTATAACTCTTGAATGTTTGACTTGACCT
CAATCGATCAAGAATGAAAAAAATAAATGCGGAGGAAGTTAGCTCGCAGC
ACTGCACTAAATGAGTCGGACGTGATGACCATTCTTGCCGGTTTTTTACG
TCTTATCTTGAACATATATATATATATATATATATTTATTTATACACAGT
ATATATACTCCCTCCGTCCCATAAGTCTGTGACGTTAGGGTTTCTCATTT
CTTGTGCAGGCTGTTTCTCTACGAATACGAAGATTTTTTAGGTCATGTAT
GGCTTGAATTGAACCTATGGATCTAGACTTTGAGAATAGTTCTTTGGTTT
CTTGTATATTGTTCCGAAATATTTCCGAAAAAATTGTGAGAATGCGAATT
AAGAAAAACGCCCTTATCGGCTCCATTTTGAGTGGCTGCGCTGCGCCCGG
CGGCGGACAAAGCGCCCCCCCCCCCCTATCGTCACACAACATCTCAGCAC
CTCGCCAAGAGCCGTACGACTCTCATGCAGCCTCCAGACCATCTGCGGTG
CGAGTTTCGTAACAAACATTGCCACTCCGGCGAGTCCGGCATCTTTTGCC
TAGAACCCATCAGCCAGAGGCAAAAAATGCGAGCTGGGTGAGGAACGTCG
AAACGCGTTGGCCGTACGGCACGCTTTAGCCCTACCTCCCAGTTAGAAAT
GGCTGCCGAAAGGCGTTGGGTCAGAGTTGGCCGAGCAGTTTGGAGTTGGC
GACCAATATCGCAGACAGCTTTGGGCGCGTCTACGAGAACAACTAGACCA
TTGAAACACCCTTTCGCTGAGGTCAGCGTCACGAAGCGGGCGGCCGTCGG
ATTTCACACCGACAAAGTACGCCACGACTCGAAGGGTCAACGCCGCAAAT
CGAACCCTGACCCTGGATCGACTGTCATGCTAGCCGAAGCTGGTCTCGTA
GCCGGCAGCTCAAAGCTTCAGCGATGGGTCAAAGAGATGGGCACCACGAG
GGTGAAATGGCGCATTACCCCATCTCTGTTGCTGACGCACCGAAAGAACC
GGGTAGACGTCATCCTGGACCAAGCAGCAAGGAGCCGCACTACTTTCAGG
AGCGGCTTCCAAACAAATCACATCGACGAAACGTGGTGTTACCTAATTCG
CGACGGGGATCGCGTCCGCATGTTCCCTGGAGAGGAAAGAGTGGGGTCTA
CCAAAGTACAACACAAGAGTCATATTTCTAAGGTGACGTTCATCTGCGCC
GTTTCGCGTCCAGATCCTTCCTGCGATTTCGACGGCAAAATTGGAATCTA
GTGTCCTTGCATCATCAAGCAGGTGCAGAGGAATTCGGCCCGGTGTGAAC
GGGGGCAGCAATACGAGTTCGACGTGACCATTGACGCCGAGTGGTACCAG
GAGTGGTTTAAGCGCTCTTGTCTCTTCGCATTGAAGGAAAAGATGCCGTG
GTTGTAGGATGGGGAAGTGGTCGCTCAGCAGGACGGAGCAACGTCCCACA
CGGGGAAAAAACGCCGCAAAAGCTCAACGAACTCAGGAGGGACAGGGGGT
GGAACGTCCATCTCATAACTCAGCCTGCGCAATCACCAGATCTCAACACC
AACGATTTGGGTTTTTTTGCATCTCTAAAAAGTAGGGTTTGGAGGGAGCG
TTACGGTACGATAGACAGTCTTGTGGAGGCATATACGACACGTACGACGT
GGCAACCTTAGAGAGGGTGTGGAAGAGCCTCTTTGAGCGGTACAATCAGG
TCTCGAAGGCGCTAGGAGGTAACAATTTCGAGGTACAGCACACCGAAACC
AAGGAAAGGCAGCGTGCCGGAAGTCTACCAAAATCGGTCAAAATGGATCG
AGAGGATTTCGACGGGGCGGTAGAATGGTGGATTCATGGGAACGAGGAAA
TCTGCAACGAATAGACTTCACGTGAAAAACATGAAGGAATCCGACGCGAA
GAACCGTTTTTAATTCGGAGGTCATTGCAACAAGTTACACTCTTAACATG
GCAGACTTATGGGACGGAGGGAGTGTATGTTTATGTATAACCTATTCTGC
AATGAACATGTCTTGTTACATTATTGTACATATTTTTTTCCAACAGATGT
CCGCAAACGCTGGTGAACTACTTCAAGAAGGCCAAGTACCCCAACCGCCT
CACCATCGGAGTGGTGCAACAAAATGACCACGAAGACGTAGATTGTGTGA
CCGAGTACTGCAAGCTCATGGGGTCGCAGGAAGGAGAGTCTTGCCCGTAC
TTCAATAACATCAAGACCATTAGGGTGGAAGCCAAGCTCGCGGCGGGACC
CTGCTACGGAAGGCATTTGCAGGTTGACCGGCGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig21962:397..3233-

>mRNA_H-paniculata_contig21962.5803.1 ID=mRNA_H-paniculata_contig21962.5803.1|Name=mRNA_H-paniculata_contig21962.5803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig21962:397..3233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGGAAAACATGGAACTCAGGTTACACCCAATGGCGCCATGGTGTGGGA
CGGCAACGGTTGGCTCGCGCTGGTGGATGATGACTCGGACATAAAGCCAC
CGCCTCCAAAGACCGAATCCTGGAAGCAGGAAGGGACTACCCTTTTTGTT
GGGGTATCTTCGTTCCGCGACAAGCGTCGGGAAAACATGGAACTCAGGTT
ACACCCAATGGCGCCATGGTGTGGGACGGCAACGGTTGGCTCGCGCTGGT
GGATGATGACTCGGACATAAAGCCACCGCCTCCAAAGACCGAATCCTGGA
AGCAGGAAGGGACTACCCTTTTTGTTGGGGTATCTTCGTTCCGCGACAAG
CGATGTCCGCAAACGCTGGTGAACTACTTCAAGAAGGCCAAGTACCCCAA
CCGCCTCACCATCGGAGTGGTGCAACAAAATGACCACGAAGACGTAGATT
GTGTGACCGAGTACTGCAAGCTCATGGGGTCGCAGGAAGGAGAGTCTTGC
CCGTACTTCAATAACATCAAGACCATTAGGGTGGAAGCCAAGCTCGCGGC
GGGACCCTGCTACGGAAGGCATTTGCAGGTTGACCGGCGGTGAATGTCCG
CAAACGCTGGTGAACTACTTCAAGAAGGCCAAGTACCCCAACCGCCTCAC
CATCGGAGTGGTGCAACAAAATGACCACGAAGACGTAGATTGTGTGACCG
AGTACTGCAAGCTCATGGGGTCGCAGGAAGGAGAGTCTTGCCCGTACTTC
AATAACATCAAGACCATTAGGGTGGAAGCCAAGCTCGCGGCGGGACCCTG
CTACGGAAGGCATTTGCAGGTTGACCGGCGGTGA
back to top