mRNA_H-paniculata_contig2196.5802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2196.5802.1
Unique NamemRNA_H-paniculata_contig2196.5802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2196.5802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2196contigH-paniculata_contig2196:19651..20436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size786
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2196.5802.1prot_H-paniculata_contig2196.5802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2196 19752..20228 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929599.636909-UTR-H-paniculata_contig2196:19650..197511622929599.636909-UTR-H-paniculata_contig2196:19650..19751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2196 19651..19751 +
1691480930.5345776-UTR-H-paniculata_contig2196:19650..197511691480930.5345776-UTR-H-paniculata_contig2196:19650..19751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2196 19651..19751 +
1622929599.6750395-UTR-H-paniculata_contig2196:20228..204361622929599.6750395-UTR-H-paniculata_contig2196:20228..20436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2196 20229..20436 +
1691480930.5545006-UTR-H-paniculata_contig2196:20228..204361691480930.5545006-UTR-H-paniculata_contig2196:20228..20436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2196 20229..20436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929599.6581817-CDS-H-paniculata_contig2196:19751..202281622929599.6581817-CDS-H-paniculata_contig2196:19751..20228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2196 19752..20228 +
1691480930.5446222-CDS-H-paniculata_contig2196:19751..202281691480930.5446222-CDS-H-paniculata_contig2196:19751..20228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2196 19752..20228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2196.5802.1

>prot_H-paniculata_contig2196.5802.1 ID=prot_H-paniculata_contig2196.5802.1|Name=mRNA_H-paniculata_contig2196.5802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MLYIPIKRCRRGAQNEANSCPYCLYCPRLSCLHSGSPNTSKASEAQEASF
NHSIGNRCTDLPTRSVKYIYIIFWPVLHSNSGRMHQEKIESYASFAVLLL
QRKYTAPDLKTGNDYTIPPPVSADKSFHIHPPRCVQPLFLNQLTSLCFLF
CLMHIRAG*
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mRNA from alignment at H-paniculata_contig2196:19651..20436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2196.5802.1 ID=mRNA_H-paniculata_contig2196.5802.1|Name=mRNA_H-paniculata_contig2196.5802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=786bp|location=Sequence derived from alignment at H-paniculata_contig2196:19651..20436+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGAAGCCATCTGATATGTCGACAGAAATCCGTTTTTGACGAGTGTCGA
GTTTGTGTAGCATACGCACTGTTGCACACTTCATCACTGAGCGTGTGACT
GATGCTCTATATCCCTATCAAGCGCTGCAGACGTGGCGCGCAGAACGAAG
CCAACTCCTGTCCCTACTGTCTGTACTGTCCGAGGCTATCTTGTCTTCAC
AGCGGCAGCCCGAACACAAGCAAAGCTAGCGAAGCCCAAGAGGCGTCCTT
CAACCATTCGATTGGAAATCGATGCACCGATTTACCCACTAGATCAGTGA
AATATATATATATTATTTTCTGGCCAGTGCTCCACTCTAATTCTGGCCGA
ATGCACCAAGAGAAAATAGAAAGCTATGCAAGCTTTGCTGTGCTGCTTCT
TCAACGGAAGTACACCGCACCTGACCTTAAAACCGGAAATGATTACACTA
TACCCCCTCCCGTATCGGCCGACAAGTCATTTCACATTCACCCGCCGAGA
TGCGTTCAACCTCTATTTTTGAACCAACTGACGTCTCTCTGTTTTTTGTT
TTGTTTAATGCACATACGTGCTGGCTAGAACTTATGGGCATGTGTCTCAA
GACATACAAACCACAAGGCACGAGATATAACGCTGCGGTACTCTCTACAC
GACTGCAGCAGCTCCTGCACACACTTCGTGTGAAGTCAACTCCACACGCA
AGAAACTCTTTCACAGCACTCACGATCAAGTAACTGGTCAACATGAACGC
ACGATATAATGATGGCTGCGACAAAACAGAACCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2196:19651..20436+

>mRNA_H-paniculata_contig2196.5802.1 ID=mRNA_H-paniculata_contig2196.5802.1|Name=mRNA_H-paniculata_contig2196.5802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig2196:19651..20436+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTATATCCCTATCAAGCGCTGCAGACGTGGCGCGCAGAACGAAGC
CAACTCCTGTCCCTACTGTCTGTACTGTCCGAGGCTATCTTGTCTTCACA
GCGGCAGCCCGAACACAAGCAAAGCTAGCGAAGCCCAAGAGGCGTCCTTC
AACCATTCGATTGGAAATCGATGCACCGATTTACCCACTAGATCAGTGAA
ATATATATATATTATTTTCTGGCCAGTGCTCCACTCTAATTCTGGCCGAA
TGCACCAAGAGAAAATAGAAAGCTATGCAAGCTTTGCTGTGCTGCTTCTT
CAACGGAAGTACACCGCACCTGACCTTAAAACCGGAAATGATTACACTAT
ACCCCCTCCCGTATCGGCCGACAAGTCATTTCACATTCACCCGCCGAGAT
GCGTTCAACCTCTATTTTTGAACCAACTGACGTCTCTCTGTTTTTTGTTT
TGTTTAATGCACATACGTGCTGGCTAGATGCTCTATATCCCTATCAAGCG
CTGCAGACGTGGCGCGCAGAACGAAGCCAACTCCTGTCCCTACTGTCTGT
ACTGTCCGAGGCTATCTTGTCTTCACAGCGGCAGCCCGAACACAAGCAAA
GCTAGCGAAGCCCAAGAGGCGTCCTTCAACCATTCGATTGGAAATCGATG
CACCGATTTACCCACTAGATCAGTGAAATATATATATATTATTTTCTGGC
CAGTGCTCCACTCTAATTCTGGCCGAATGCACCAAGAGAAAATAGAAAGC
TATGCAAGCTTTGCTGTGCTGCTTCTTCAACGGAAGTACACCGCACCTGA
CCTTAAAACCGGAAATGATTACACTATACCCCCTCCCGTATCGGCCGACA
AGTCATTTCACATTCACCCGCCGAGATGCGTTCAACCTCTATTTTTGAAC
CAACTGACGTCTCTCTGTTTTTTGTTTTGTTTAATGCACATACGTGCTGG
CTAG
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