mRNA_H-paniculata_contig21945.5798.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21945.5798.1
Unique NamemRNA_H-paniculata_contig21945.5798.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.160e-32
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    4 TINAEWYQERYKDPFLPALKENMPWFEGEKVVAQQDGATPHTGKDTPRQLNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKSRVW 270
            TI+AEWY++ Y D  LPA+KE MPW   ++VV QQDGA+PHTGK  P  LN  G  RGW V LVTQP QSP+LNI +LG FASLK RVW
Sbjct:  265 TIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVW 353          
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Match: UPI000E6FFC28 (uncharacterized protein LOC113313105 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FFC28)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-11
Identity = 32/91 (35.16%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    4 TINAEWYQERYKDPFLPALKENMPWFEGEKVVAQQDGATPHTGKDTPRQLNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKSRVWRD 276
            ++N +  +  + +  LPA++E  P + GE +  QQD A PH   D    L E  ++ G+++ L  QP+QSPN+N+ +LGFF  ++S   R+
Sbjct:  333 SVNKDITRACFVNKLLPAIREKWPNYNGETIYIQQDNAKPHVKVDDEEFLKEAAKE-GFDIRLRFQPSQSPNMNVLDLGFFRDIQSLQHRE 422          
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Match: UPI000B8AB67D (uncharacterized protein LOC110800636 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AB67D)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-11
Identity = 29/86 (33.72%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    4 TINAEWYQERYKDPFLPALKENMPWFEGEKVVAQQDGATPHTGKDTPRQLNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKS 261
            ++  E  + +  D  LPA++   PWF  + ++ QQD + PH   +    L+   ++ G+N+ L+ QP QSP+LN+ +LGFF +++S
Sbjct:  363 SVTKEVIRRKIIDELLPAIRSKWPWFASKDILIQQDNSRPHINPNDAEFLDAATQE-GFNIQLICQPPQSPDLNVLDLGFFRAIQS 447          
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU)

HSP 1 Score: 68.6 bits (166), Expect = 2.040e-11
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    4 TINAEWYQERYKDPFLPALKENMP-WFEGEKVVAQQDGATPHTGKDTPRQLNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKS 261
            ++NA  YQ+   +  LPA++E  P  ++   +  Q+D A PH  +     + E  R+ GWN+ + TQP  SP+ N+ +LGFFAS+++
Sbjct:  324 SVNAAEYQKMMLEKVLPAIQEKFPVCWKSRPIFIQEDNAKPHHLRSRAA-VREAAREAGWNITVTTQPPNSPDFNVLDLGFFASIQA 409          
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Match: A0A485LG75_9STRA (Aste57867_20666 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LG75_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.530e-11
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 VTINAEWYQERYKDPFLPALKENMPWFEGEKVVAQQDGATPHTGKDTPRQLNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKSRVWRDVT 282
            V++NA+ Y++   +  +PA+K + P    ++V+ QQD ATPH    T  +L+ +  D GW   +  QP  SP+LN+ +LGFFAS++S   R V+
Sbjct:  221 VSVNAQVYRDFVLNKVIPAIKASFP-STNKRVILQQDNATPHRSV-TDAELSSVSTD-GWTFVMRRQPPNSPDLNVLDLGFFASIQSLQLRKVS 311          
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Match: A0A485KZK7_9STRA (Aste57867_13656 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZK7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.700e-11
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 VTINAEWYQERYKDPFLPALKENMPWFEGEKVVAQQDGATPHTGKDTPRQLNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKSRVWRDVT 282
            V +NA+ YQ+   +  +PA+KEN P     +VV QQD ATPH    +   L  +  D GW   +  QP  SP+LN+ +LGFFAS+++  ++ V+
Sbjct:  272 VNVNADVYQDYVINKVIPAIKENFPSAH-RRVVLQQDNATPHRSI-SDASLASVSTD-GWTFVVRRQPPNSPDLNVLDLGFFASIQALQYKSVS 362          
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Match: A0A6A3WM28_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WM28_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.110e-11
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 VTINAEWYQERYKDPFLPALKENMPWFEGEKVVAQQDGATPHTGKDTPRQLNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKSRVWR 273
            V++    Y++   D  LPA +  +P   G  V  QQD A PH  +D   ++   G+  GW + +  QP +SP LN+ +LGFFAS+++  +R
Sbjct:   51 VSMTRVLYRKLLVDKVLPAFRAKLPVRRGTTVFVQQDNAGPHVREDDT-EVETAGKVDGWKIKMRCQPPRSPELNVLDLGFFASIQALQYR 140          
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Match: A0A484MFG5_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MFG5_9ASTE)

HSP 1 Score: 67.4 bits (163), Expect = 4.840e-11
Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    7 INAEWYQERYKDPFLPALKENMPWFEGEKVVAQQDGATPHTGKDTPRQLNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKS 261
            +N +  ++   +  +PA K   P    + V+ QQD A PH   D P ++    +D GWN+++  QP  SP+LN+ +LGFFAS+ S
Sbjct:  262 VNRDVMKQMMLNQVIPAFKAKWPKTRAKIVIIQQDNAKPHVHPDDPDRVLSCQKD-GWNISIKCQPPNSPDLNVLDLGFFASIDS 345          
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Match: A0A6A3MN98_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MN98_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.660e-11
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   40 DPFLPALKENMPWFEGEKVVAQQDGATPHTGKDTPRQLNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKSRVWRDVT 282
            D  LPA++  +P         QQD A PH  +D   +L  +G+  GW + +  QP +SP LN+ +LG FAS+ +  +R  T
Sbjct:    2 DKVLPAMRAKLPVIRDTTAFVQQDNAGPHVREDDT-ELETVGKGDGWKIKMRCQPPRSPELNVLDLGVFASIPALQYRKAT 81          
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Match: A0A6A3XTU8_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XTU8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.410e-11
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   22 YQERYKDPFLPALKENMPWFEGEKVVAQQDGATPHTGKDTPRQLNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKSRVWRDVT 282
            Y++   D  LPA+   +P   G  V   QD A PH G+D   +L   G+  GW + +  QP +SP LN+ +L FFAS+++  +R  T
Sbjct:    6 YRKLLVDKVLPAIWAKLPVRRGTTVFVPQDNAGPHVGEDDT-ELETAGKVDGWKIKMRCQPPRSPELNVLDLVFFASIQALQYRKAT 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21945.5798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.160e-3264.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000E6FFC281.100e-1135.16uncharacterized protein LOC113313105 n=1 Tax=Papav... [more]
UPI000B8AB67D1.100e-1133.72uncharacterized protein LOC110800636 n=1 Tax=Spina... [more]
I6THG9_PSEMU2.040e-1135.63Tranposase n=1 Tax=Pseudo-nitzschia multiseries Ta... [more]
A0A485LG75_9STRA2.530e-1138.30Aste57867_20666 protein n=1 Tax=Aphanomyces stella... [more]
A0A485KZK7_9STRA2.700e-1139.36Aste57867_13656 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A3WM28_9STRA3.110e-1135.16Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A484MFG5_9ASTE4.840e-1136.47Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A6A3MN98_9STRA5.660e-1135.80Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6A3XTU8_9STRA7.410e-1136.78Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21945contigH-paniculata_contig21945:3621..3911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.7e-08
Seed eggNOG ortholog4792.ETI36170
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929599.5203705-CDS-H-paniculata_contig21945:3620..39111622929599.5203705-CDS-H-paniculata_contig21945:3620..3911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21945 3621..3911 +
1691480930.5110247-CDS-H-paniculata_contig21945:3620..39111691480930.5110247-CDS-H-paniculata_contig21945:3620..3911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21945 3621..3911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21945.5798.1prot_H-paniculata_contig21945.5798.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21945 3621..3911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21945.5798.1

>prot_H-paniculata_contig21945.5798.1 ID=prot_H-paniculata_contig21945.5798.1|Name=mRNA_H-paniculata_contig21945.5798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
VTINAEWYQERYKDPFLPALKENMPWFEGEKVVAQQDGATPHTGKDTPRQ
LNELGRDRGWNVNLVTQPTQSPNLNITNLGFFASLKSRVWRDVTVR*
back to top

mRNA from alignment at H-paniculata_contig21945:3621..3911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21945.5798.1 ID=mRNA_H-paniculata_contig21945.5798.1|Name=mRNA_H-paniculata_contig21945.5798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig21945:3621..3911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACCATTAACGCCGAGTGGTACCAGGAGAGGTACAAGGACCCTTTTCT CCCAGCATTGAAGGAAAACATGCCGTGGTTCGAGGGTGAGAAAGTGGTCG CGCAGCAGGACGGAGCAACCCCCCACACGGGAAAAGACACACCGCGACAG CTCAATGAACTCGGAAGGGACCGGGGGTGGAACGTCAACCTCGTAACTCA GCCTACGCAGTCACCAAATCTCAACATAACCAATTTGGGGTTCTTTGCAT CTCTGAAAAGTAGGGTTTGGAGGGACGTTACAGTACGATAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig21945:3621..3911+

>mRNA_H-paniculata_contig21945.5798.1 ID=mRNA_H-paniculata_contig21945.5798.1|Name=mRNA_H-paniculata_contig21945.5798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig21945:3621..3911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACCATTAACGCCGAGTGGTACCAGGAGAGGTACAAGGACCCTTTTCT
CCCAGCATTGAAGGAAAACATGCCGTGGTTCGAGGGTGAGAAAGTGGTCG
CGCAGCAGGACGGAGCAACCCCCCACACGGGAAAAGACACACCGCGACAG
CTCAATGAACTCGGAAGGGACCGGGGGTGGAACGTCAACCTCGTAACTCA
GCCTACGCAGTCACCAAATCTCAACATAACCAATTTGGGGTTCTTTGCAT
CTCTGAAAAGTAGGGTTTGGAGGGACGTTACAGTACGATAGGTGACCATT
AACGCCGAGTGGTACCAGGAGAGGTACAAGGACCCTTTTCTCCCAGCATT
GAAGGAAAACATGCCGTGGTTCGAGGGTGAGAAAGTGGTCGCGCAGCAGG
ACGGAGCAACCCCCCACACGGGAAAAGACACACCGCGACAGCTCAATGAA
CTCGGAAGGGACCGGGGGTGGAACGTCAACCTCGTAACTCAGCCTACGCA
GTCACCAAATCTCAACATAACCAATTTGGGGTTCTTTGCATCTCTGAAAA
GTAGGGTTTGGAGGGACGTTACAGTACGATAG
back to top