mRNA_H-paniculata_contig21930.5795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Match: A0A6H5KNC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC4_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.470e-20 Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 3
Query: 645 STARKVGNIGDIRKVTDMAWVTVVCNTAEDLVCVYELLKQRL-QV--GDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGWT 944
ST RK N G IR VTD+A TV+C+T D+ V+E L ++ QV G++ V NGF+ +Y NGYRDVK+FV + EHICEIQLH+R F+ LKD QH++Y W+
Sbjct: 270 STTRKANNWGGIRYVTDLARGTVICDTPRDVAQVFEALTLKVGQVPGGNVLRVSNGFIRNYGRNGYRDVKMFVIIAEHICEIQLHLRPFHCLKDGQHEIYEWS 372
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Match: D8LH34_ECTSI (Peptidase-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH34_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.730e-18 Identity = 55/105 (52.38%), Postives = 67/105 (63.81%), Query Frame = 3
Query: 633 K*KNSTARKVGNIGDIRKVTDMAWVTVVCNTAEDLVCVYELLKQRL-QVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGWT 944
K K S +RK +G+ R VTD A T VC T DLV V LL + Q ++ V NGF+ +Y NGYRDVK+ V L H CEIQLH+RSFY LKD QH+VY W+
Sbjct: 124 KSKESASRKADKLGNARFVTDFARATFVCKTPHDLVEVIALLTDGIGQEDNLLRVSNGFLRNYGRNGYRDVKMIVLLAGHACEIQLHLRSFYGLKDGQHEVYEWS 228
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 100 bits (248), Expect = 5.890e-18 Identity = 55/105 (52.38%), Postives = 68/105 (64.76%), Query Frame = 3
Query: 633 K*KNSTARKVGNI--GDIRKVTDMAWVTVVCNTAEDLVCVYELLKQRLQVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 941
K + ST RK GD+RKVTDMA V+V+C+T E L Y + + Q GD+ V NGF + +GYRDVKV + EHICEIQLH+R F+TLK DQH VY W
Sbjct: 1561 KSRASTQRKARKSYDGDVRKVTDMARVSVICDTPEALKRAYLAIVESFQ-GDVLRVANGFNSDWMPSGYRDVKVNPVVNEHICEIQLHLREFFTLKSDQHAVYEW 1664
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Match: D8LQL3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 1.080e-17 Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 3
Query: 645 STARKVGNI--GDIRKVTDMAWVTVVCNTAEDLVCVYELLKQRLQVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 941
ST RKV + GD+RKVTDMA VTV+C T EDL VY + + D+R V NGF + + +GYRDVKV + EH+CEIQLH+ F LK DQH VY W
Sbjct: 139 STQRKVRRLYDGDVRKVTDMARVTVICLTPEDLQQVYSDIMGSM---DVRRVTNGFKNDWMPSGYRDVKVNPVVNEHLCEIQLHLGDFSVLKSDQHAVYEW 236
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Match: A0A6H5JHK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK0_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 2.320e-17 Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = 3
Query: 633 K*KNSTARKVGNI--GDIRKVTDMAWVTVVCNTAEDLVCVYELLKQRLQVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 941
K + ST RK GD+RKV DMA V+V+C+ E L Y + + Q GD+ V NGF + +GYRDVKV ++EH+CEIQLH+R F+TLK QH VY W
Sbjct: 134 KSRASTQRKASKSYGGDVRKVADMARVSVICDNPEALKRAYLAIVESFQ-GDVLRVANGFNSDWMPSGYRDVKVNPVVDEHLCEIQLHLREFFTLKGGQHAVYEW 237
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Match: A0A6H5JK27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK27_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 4.170e-17 Identity = 51/101 (50.50%), Postives = 64/101 (63.37%), Query Frame = 3
Query: 645 STARKVGNI--GDIRKVTDMAWVTVVCNTAEDLVCVYELLKQRLQVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 941
ST RK GD+RKV DMA VTV+C+T E L V+ + LQ D+ V+NGF + GYRDVKV + EH+CEIQL +R+F+TLK QH VY W
Sbjct: 106 STRRKASQFCGGDVRKVADMARVTVICDTPEALKQVFSKIMGLLQPQDVLRVKNGFDSDWTPGGYRDVKVNPVVNEHLCEIQLQLRNFFTLKSGQHAVYTW 206
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Match: A0A6H5L226_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L226_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 4.430e-17 Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 3
Query: 633 K*KNSTARKVGNI--GDIRKVTDMAWVTVVCNTAEDLVCVYELLKQRLQVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 941
K ST RK + G++R ++DMA V+V+C+ EDL + + RLQ ++R V NGF + +GYRDVKV + EH+CEIQL +R FY LK DQH VY W
Sbjct: 135 KSSESTTRKAKSSYGGNVRMLSDMARVSVICDKPEDLARAFSSILGRLQPHEVRRVTNGFTSDWMPSGYRDVKVNPAVNEHVCEIQLQLRQFYELKHDQHAVYEW 239
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Match: A0A6H5KU99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU99_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 6.420e-17 Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 3
Query: 603 GFPPLLSRTKK*KNSTARKVGNIGDIRKVTDMAWVTVVCNTAEDLVCVYELLKQRLQVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 941
G P + + K R G G++R+V DMA V+CNT EDL Y L R+Q D++ V NGF + NGYRDVKV + + H+CEIQL +RSF+ LK QH VY W
Sbjct: 143 GVYPKIKTLESTKRKAVRFYG--GNVRRVADMARAAVICNTPEDLETAYIGLMARIQPHDVKRVSNGFDADWMPNGYRDVKVNLVVNGHLCEIQLQLRSFFNLKAGQHVVYKW 253
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Match: D7G8W4_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W4_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 8.580e-17 Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 3
Query: 645 STARKVGNI--GDIRKVTDMAWVTVVCNTAEDLVCVYELLKQRLQVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 941
ST RK N GD+RKV DMA ++VVC EDL Y + ++L+ DI V NGF+ + +GYRDVK+ + H+CEIQLH+R FY LK QH VY W
Sbjct: 58 STERKTVNFYSGDVRKVADMARLSVVCKKPEDLKQAYLGITRKLKPRDIFRVTNGFISDWMPSGYRDVKLNAVVNGHLCEIQLHLREFYNLKRHQHVVYEW 158
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Match: D7FTB3_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB3_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 1.180e-16 Identity = 51/105 (48.57%), Postives = 63/105 (60.00%), Query Frame = 3
Query: 633 K*KNSTARKVGNI--GDIRKVTDMAWVTVVCNTAEDLVCVYELLKQRLQVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 941
K + ST RK GD+RK+TDMA VTV+C T E L + + LQ D+ V NGF + +GYRDVKV + EH+CEIQL +R F LK DQH VY W
Sbjct: 178 KSRESTRRKAIKFCGGDVRKITDMARVTVICETPEALEQAFSAILGSLQPQDVLRVANGFNSDWMPSGYRDVKVNAVVHEHLCEIQLQLREFVALKSDQHAVYEW 282 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21930.5795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21930.5795.1 >prot_H-paniculata_contig21930.5795.1 ID=prot_H-paniculata_contig21930.5795.1|Name=mRNA_H-paniculata_contig21930.5795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp MAWVTVVCNTAEDLVCVYELLKQRLQVGDIRAVRNGFVDSYRWNGYRDVKback to top mRNA from alignment at H-paniculata_contig21930:1384..3545+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21930.5795.1 ID=mRNA_H-paniculata_contig21930.5795.1|Name=mRNA_H-paniculata_contig21930.5795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2162bp|location=Sequence derived from alignment at H-paniculata_contig21930:1384..3545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21930:1384..3545+ >mRNA_H-paniculata_contig21930.5795.1 ID=mRNA_H-paniculata_contig21930.5795.1|Name=mRNA_H-paniculata_contig21930.5795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig21930:1384..3545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |