mRNA_H-paniculata_contig2193.5793.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2193.5793.1
Unique NamemRNA_H-paniculata_contig2193.5793.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2193.5793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2193contigH-paniculata_contig2193:16534..21545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size540
Cds size540
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2193.5793.1prot_H-paniculata_contig2193.5793.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2193 16534..21545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929598.883105-CDS-H-paniculata_contig2193:16533..166811622929598.883105-CDS-H-paniculata_contig2193:16533..16681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2193 16534..16681 +
1691480930.2856991-CDS-H-paniculata_contig2193:16533..166811691480930.2856991-CDS-H-paniculata_contig2193:16533..16681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2193 16534..16681 +
1622929598.896538-CDS-H-paniculata_contig2193:16915..171811622929598.896538-CDS-H-paniculata_contig2193:16915..17181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2193 16916..17181 +
1691480930.2948697-CDS-H-paniculata_contig2193:16915..171811691480930.2948697-CDS-H-paniculata_contig2193:16915..17181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2193 16916..17181 +
1622929598.9107308-CDS-H-paniculata_contig2193:21419..215451622929598.9107308-CDS-H-paniculata_contig2193:21419..21545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2193 21420..21545 +
1691480930.3056126-CDS-H-paniculata_contig2193:21419..215451691480930.3056126-CDS-H-paniculata_contig2193:21419..21545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2193 21420..21545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2193.5793.1

>prot_H-paniculata_contig2193.5793.1 ID=prot_H-paniculata_contig2193.5793.1|Name=mRNA_H-paniculata_contig2193.5793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
MAGIQDSLRRLQESIKGLSDASALVGASSTASNASENSARGIISASSSSS
GTGAGDGSCSRSSRSSKNSDDGKSNGDDNSGGAAGRDNISNRRFDGGRGG
SPFRQQEQIGRSGVGFGTAAAGPFLSASDGLIMAESAELRAARELEDLRA
EKESLQLMKQQLAAVHQLRIDLQRKESVIQ
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mRNA from alignment at H-paniculata_contig2193:16534..21545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2193.5793.1 ID=mRNA_H-paniculata_contig2193.5793.1|Name=mRNA_H-paniculata_contig2193.5793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5012bp|location=Sequence derived from alignment at H-paniculata_contig2193:16534..21545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGGATACAGGATTCACTACGGCGCCTCCAGGAGTCCATCAAGGG
ACTTTCCGATGCAAGCGCCCTGGTAGGCGCCTCCTCCACTGCCAGCAACG
CCTCCGAAAACAGCGCAAGAGGCATCATCAGCGCCAGCAGCAGCAGCAGT
AGACAAAAACAGCTGGATCATCAGCATCCCCATCTTGCTCAAACAAGGCA
CATCTTTCAGAATGACATGATGGTGGAACAACGCCGAGAAGCGAACGAAG
CGTCTAGGCACGCCAACTACTACGGCCCTCACGATCCGCATCGCCATCTT
GCCGGCCGTGACGAGGATACACGCCGACAGCAACTACCCGCTGCTGCCGC
TGTCGCCGGCGGCGGCGGTCGCAATAATCCAGGCGGCACCGGCGCCGGCG
ATGGATCGTGCTCTAGATCATCGAGATCCTCCAAAAACAGCGACGATGGA
AAGAGCAACGGCGACGACAACAGTGGCGGGGCAGCAGGGCGTGACAACAT
CAGCAATAGGCGTTTCGATGGTGGGCGCGGAGGATCGCCGTTCCGACAGC
AGGAGCAAATTGGCCGGAGCGGGGTTGGATTCGGCACGGCAGCGGCGGGC
CCGTTTTTATCGGCAAGCGATGGGTTGATCATGGCGGAGTCGGCGGAGGT
GGGCTCTGGGGGGGGAAAGTTTTCGTGTTTGTGTAGTGGATGCTCGCTGT
AGTCGGGTTGGAGTTATGGTTTATACGAATACAACAGTAAGTAGGTTTAT
ACTTCGACGTATAACAGTAGTTTCCAGCTACGGGTGTGTACACGGCTCGT
GCTTTGGATGTGTTGCACGCAAAACGGAGATTCATTCCCTATTCAAAAAT
TACTCGATTACAAAGTAGTAGAAATAATTGTAAATTACCACAACGATGAT
CTTCATGTGCTGGGAAGCAGTATCGATACGGACCACACACGATACTGTAT
TGCACTACTGTGCTGTGTTGTTTACAAAAGGGATATCTTAGACACACAGG
TGCATATCCCCCCCTTGAATATAGGTACTGCAGCTGTGAGTGCAGGCCAC
ATAACTTCAGCGTGACATGTGCCATGATGATACTAGTAGTAACCGGTACA
GTATTTAGGTGCCGAAAAAAAGTATTCAAACCCAGGTAGAGTACACCGTA
TCGTAACGTAACCCCACTCCCCGTCAGCTCCAAGGTAGGCCTATCCCCTG
TGGAGTTAAAAAAAAATCTAAATATATAATATACTAGTATTGGTATGAGT
ACGGACAACGTACCCGCGACATAAAATTCAGATTTAAACAAAAAACACGA
ATACGATCCAGTCGACGTCTGATAAATCAAAAATGCTATTTTACTTTCAA
TTTTAATATATAATATCGTGTTGTAAAACTACTCTGGATGACAGTAAAAA
GTCTGGAGACTTACTATAGGTATGTCTCAAAATTAATTTATTAGGGTTCG
GAGTTATCTAACCCCCCCCCCGCCCCCCCCCGCTGCCGAGTGAAGGTTTT
TTTAAATGCGGTGCAAAAATTGCAGAAACAGCAGAAAAATATGTTGTGTT
TTTATCTGATTTCATCTTGGAAGTTACGAAGTGTTGCAGCTGAGTGTCGC
CGCACTCCGCCTACAGTACTACCGCGGACTTCGCCCTCTCGATTCCTGGG
CTAGTGATAAGCACAAAACAAATACATGTCCAATACAGTGCAACGAGCAT
TGAAAAACAATGCTGTATCGACGACTCTGTTAGTCGAGTCTCGGTGGTGA
AACTCCAAGCTGCTAGAGAGTGTCTCTCGCTCGCTTCGCCCAACCTCGCC
AACAGTGTTCTCGGTGGCGTCTCGTGACGTCCTCCTCCAAACATCACGCT
AATTACTATAGATGCAGGTAGTGAATTTAGCTAGCGCCCGTTTGTGCTCG
TTATTCCCTTTCCTAACCCCTGTGGCAAGGCCGCCAGCAGCCAAAATTCC
ACAAACCTGATAGTACATATAGTACTCGGGTATGTCTTCCATTTCGACAG
CATGAGCTATGTTCGGTACCGCCCTAAGGCAACGGCCCATGCACATGTAT
GTCTCTGGAGAATAACGTGTACATTCTGTGGGATGGTTCCCTGAAACCCG
AGGATAAAAATTAAATATCTCCCCACCCCGAGTTGGATCGCTGCTGTTGT
CTCCATCGCGTGATATTACAAGGCACGCACAGAGCCAACACATATCCAGT
CTTCGGACTGACGGGTCACGATCAATTAACAGACGAATATGTTTTAAAAG
TCCTTACTTCCCCGCCCTCTCCCCCGCCCTCCCCCCACTAAAAGGGTTTC
TCGATGATTGGGATGTCTGTAGTATGTCCTGAAATTCATGATTAGGAAAC
CCTTGTTATTTCCGAGTGCTTTTGCCTTCCCTGCCTCGCTGTTGTGCCGT
GGTTTGTCCGCGTGCCGTATGCGTATGGCCGTGCTCAGATCTTGCTAGGC
GAGAGGGTGGGTTATCTGCTACGGTTGCATGTAGCGCCTTACAGCGCAAT
ATGACAGGGACGATATGGCGCAAAAGCACCGATATTGGCTGGTTGTTGAA
CGTCAGCACCGCGTATCACAAAGTGACCTCAACGGCTCTTGCACTTGGTC
GTATATAATTTCGATAAAAAGAGCACAATCGCCAAACAAAATAGAGTAGG
TACACCGGATTAAGGCGGTCTGATTTAAGGTAGTACAATTCAAGGCGGCA
AAATTCAAGGCCAAGCTAGATTTAAGGCGGATCAAATCGACTTATCGCCA
ACAAAAAATATATCACACATATTTCTCAAGTATGAAAATACGACCATTTT
AATCAGGCGGTTTGGGAATTCAAGATGGGCGTTTTTGGCGTGTCACCACC
TCTTCTTAAATCTGGGCAACCACTTTGTATGCATGTTCAGAAAATTCCCA
GAATTTTCGAAGCGAAGATTAGACCAAGCATAGTGATTAGGATGTCCCAT
TTGTTTTTCATAACTATGCAGTCTGTGGCCGAAGTATCGTGGATTGCCTT
TGGTCGAAGACACAATTAAAGTCTGGTTTAAGTATTGCCAATATCATTAC
TTATTCATTCTATTAGAATCCAGCAAGTTTTTCGTTTGAAGCAGCCGCCT
TTGGACATCGAAACAGACACCATGAAAAGCGGCATCCGTCCGCCCTCGCT
AAAATTGAACTCTGAGGTATTCGGAATTGGGACTTGGAATAACCCACAGA
ATGCTCCACTGCTTTTGTTTATCATTAGATCCCACTCACACCCAGTAAAG
CTGTGACGTGTATATTCGGAGAGATGAAGCGCCAAACGTAACATGCTGCA
AAGGTTTACTGTTCCTCGTCATTGTTCGTAGGTAGAACAGGGGCAAAAAT
TAGCCTCTCATTGGTCGAGCTTATTTTTTCAACTTGCGTGTTTTTTTGGT
ATCCAAAGGCCACCGTTTCACCTACAAAAGTGGGGTTCAACCCCAAAAAC
ATGTATTTTAGAATTTCGAAAGACTGGAAGTAAAAAATAATAAAAAAATA
CGAAATATATAACTCGGAGGATGATTTTATGTCTTCCACGACACGAATCG
ACCATACTCACTAGCATAAAAGATATATGTGTATGTATATATATATATAT
ATTAAATAAAGTATAAATTTTCGAGTTAACCTGCATGTTGTTGTCATTTT
CTACCTATCCGGTAAGCACAGGTTAGGTATCAAAATTTGATCTCTTCAGA
GATCAAATATTTTTGGTGTGGTTTTTCACGCCACGCTACAGCGAGAGAAT
TCAGCATACGGAATCGGCCCATAGAATATTATGGAGTACGCACGACAGGC
AAAATAAACACGTACAAGATCAAGTTATTTGGCTTTATTTCACGCGTCGC
ACTAAACAGCAAGTTCATACTATGTAAAAGTTACCAAGTGAATAAAAGGA
GCAGGAAAAAAAACAAAAAAAAACACGTCCAGTGGCACACTAAATCCTGG
CCTTTTTTTTTTTTTTCGTTCTGTCTTGTCCTGTCCTGTCCTGTCCTGTT
CTGTTCTGTTCTGTTCTGTTCTGTTCTGTTGTGCTCTGTTATGCTCTGTT
GTGCTCTGTTCGTCGTGTGTGAATGAACCCTACAACTTGGAAAAAAGCAA
AAAAAAAAAAAAGCAAAAAAATCTATTCCCCTTGGATTCATCAAGGATAT
TATAATTATTTTTGCATTCCGACAGTTGTAGATTTAGAACTGGCTGTTGG
GGAATCTTCAAAAGCAAGCTCCACAAAGTAAGTAAGAAATATGAACGGCA
GACGAAAAAAGAAAACTTCAAACTTAATAATAACCGCGCGTCGTACTCGA
ATATCCGGCCTACAGCAAATCCTCTTGGGCAAAAGACTTGTTCGTCAAAG
ATATTCAGATACAAGGAGGAGGTGGCGAGGACAGTACGGTGAACTCAATA
ATCTTCCAAAATTCTCACTCATTTGCATATTTTCGTTGGTCGCCGAGGAA
AATCTGTTGCCTGATGGCGCATATTGGTCATTTGCCAATATATCGGTTGT
CCTGGCTGTCGACATGCGCAAATACTGATATATAGATAATATAAAATCTA
GCGAAGTATGTGGAGCAGCATTGCAAGCTCACCTGCATCTGTTTTGTCTT
TTTCCAAATCCACCTGCCGTGCGTGTCGAACTTTTTTCGTGTGCTGCATA
CGCATTTGCCCTATTTTCTCGGCGAGCATTGGGTGTATCTCGCATAGTAT
TGTTATTGCCTTCTGCCAATTGCAGACTCAGAGCTGGCTATTGGAAATCT
CCGAAAGTAAGCTCACAAAAATAAGAAAAATGAACTCCAAATAATAACCA
TTTTCTCGCATAATATTGTACCATCTGTCATTAACGAATATCGCCATACA
CCGTACGGCGGGTACATGTGACACATGCCTCCGCAGTTGCGTGCCGCCCG
CGAGCTGGAAGACCTAAGGGCCGAGAAGGAAAGCCTGCAGCTCATGAAAC
AGCAGCTGGCCGCGGTGCACCAGCTGCGTATCGATCTGCAAAGGAAGGAA
TCCGTGATACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2193:16534..21545+

>mRNA_H-paniculata_contig2193.5793.1 ID=mRNA_H-paniculata_contig2193.5793.1|Name=mRNA_H-paniculata_contig2193.5793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig2193:16534..21545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGGATACAGGATTCACTACGGCGCCTCCAGGAGTCCATCAAGGG
ACTTTCCGATGCAAGCGCCCTGGTAGGCGCCTCCTCCACTGCCAGCAACG
CCTCCGAAAACAGCGCAAGAGGCATCATCAGCGCCAGCAGCAGCAGCAAT
GGCGGGGATACAGGATTCACTACGGCGCCTCCAGGAGTCCATCAAGGGAC
TTTCCGATGCAAGCGCCCTGGTAGGCGCCTCCTCCACTGCCAGCAACGCC
TCCGAAAACAGCGCAAGAGGCATCATCAGCGCCAGCAGCAGCAGCAGCGG
CACCGGCGCCGGCGATGGATCGTGCTCTAGATCATCGAGATCCTCCAAAA
ACAGCGACGATGGAAAGAGCAACGGCGACGACAACAGTGGCGGGGCAGCA
GGGCGTGACAACATCAGCAATAGGCGTTTCGATGGTGGGCGCGGAGGATC
GCCGTTCCGACAGCAGGAGCAAATTGGCCGGAGCGGGGTTGGATTCGGCA
CGGCAGCGGCGGGCCCGTTTTTATCGGCAAGCGATGGGTTGATCATGGCG
GAGTCGGCGGAGGCGGCACCGGCGCCGGCGATGGATCGTGCTCTAGATCA
TCGAGATCCTCCAAAAACAGCGACGATGGAAAGAGCAACGGCGACGACAA
CAGTGGCGGGGCAGCAGGGCGTGACAACATCAGCAATAGGCGTTTCGATG
GTGGGCGCGGAGGATCGCCGTTCCGACAGCAGGAGCAAATTGGCCGGAGC
GGGGTTGGATTCGGCACGGCAGCGGCGGGCCCGTTTTTATCGGCAAGCGA
TGGGTTGATCATGGCGGAGTCGGCGGAGTTGCGTGCCGCCCGCGAGCTGG
AAGACCTAAGGGCCGAGAAGGAAAGCCTGCAGCTCATGAAACAGCAGCTG
GCCGCGGTGCACCAGCTGCGTATCGATCTGCAAAGGAAGGAATCCGTGAT
ACAGTTGCGTGCCGCCCGCGAGCTGGAAGACCTAAGGGCCGAGAAGGAAA
GCCTGCAGCTCATGAAACAGCAGCTGGCCGCGGTGCACCAGCTGCGTATC
GATCTGCAAAGGAAGGAATCCGTGATACAG
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