mRNA_H-paniculata_contig2193.5791.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2193.5791.1 vs. uniprot
Match: A0A6H5KG66_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG66_9PHAE) HSP 1 Score: 355 bits (911), Expect = 3.490e-109 Identity = 228/441 (51.70%), Postives = 258/441 (58.50%), Query Frame = 1
Query: 1 EGVVIRVMISGAHTSFLHMRVFPSTTAGQVCRKIGERLRQSQVEQADYCLIAVYARPAAAAAEDAACTAGGTG-------MDVADAGGYCSADEGTGGGGVGRRAGKGTGISVSLHGGGRRVAAGDSRHRQSVRHVLHTFRPEERLGEHRLGLPPPPPLSSPTTEYPTPPNRRTGGEGESYVDRRNRGGGISFPKEGPDSVATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRLRHRVGEEXXXXXXXXXXXXXXXXXPAAAAWKSRWIYRDSRASALEADELQVEVSGSDTSEDEARAGWTDLTGLGQGHYSGYLLKKSNRDANLWRRRWCILAGDKLWLLRSKSEQSGRRRRG--RSHSYPLSLVPCKSKEVSRGAVPSHCFELHTGTRTHVFRAESRAKQVVWVNSLQRQARQAEEDSYISLAEHMVCDE 1296
EGVVIR++ISGAH SFLHMRVFPSTTAGQVCRKIGE+LRQ EQ +Y LIA+YARP+ ++ T GG+ VAD G DE G G AG G L GRR G+ H+ S+RH+LHTFR EERLGE RLGLP P P + P + R G G++ R R S A GAA GR G PA W+SRWIYR+ A AL+ DELQVEVSGSDTSEDE RAGW DL GLGQGHY GYL KKS D NLWRRRWCILA D+LWLLRSKSEQSGRRR G RSHS+ L+LVP ++ V+ PSHCFELH+ R H FRAESRAKQV WV +LQR ARQA EDSY+S+AEHMVCDE
Sbjct: 152 EGVVIRILISGAHASFLHMRVFPSTTAGQVCRKIGEKLRQLPAEQNEYVLIAIYARPSRNVSD----TGGGSNGPGHRHSAGVADRGAAVGGDE-VDNDGAGYTAG-GVRDEHELRHDGRRRRRGEEEHQSSIRHILHTFRSEERLGEVRLGLPEPNSAGRP--QNPANSHDR-GARGDADGPDRGRTDSFSTWTTAASPAAGGAADIDAALRAQGTIDNGGG----------------GRRVDEEGAAGKLGGSGAGARGGRAEQPALM-WRSRWIYRERTAPALDPDELQVEVSGSDTSEDERRAGWIDLRGLGQGHYCGYLQKKSRSDPNLWRRRWCILADDRLWLLRSKSEQSGRRRGGGGRSHSFSLALVPSVARAVNHPTAPSHCFELHSHNRVHTFRAESRAKQVAWVGTLQRHARQAAEDSYMSVAEHMVCDE 566
BLAST of mRNA_H-paniculata_contig2193.5791.1 vs. uniprot
Match: D8LCW3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW3_ECTSI) HSP 1 Score: 333 bits (854), Expect = 1.050e-100 Identity = 230/450 (51.11%), Postives = 253/450 (56.22%), Query Frame = 1
Query: 1 EGVVIRVMISGAHTSFLHMRVFPSTTAGQVCRKIGERLRQSQVEQADYCLIAVYARPAAAAAEDAACTAGGTG------MDVADAGGYCSADEGTGGGGVGRRAGKGTGISVSLHGGGRR-----------VAAGDSRHRQSVRHVLHTFRPEERLGEHRLGLPPPPPLSSPTTEYPTPPNRRTGGEGESYVDRRNRGGGISFPKEGPDSVATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRLRHRVGEEXXXXXXXXXXXXXXXXXPAAAAWKSRWIYRDSRASALEADELQVEVSGSDTSEDEARAGWTDLTGLGQGHYSGYLLKKSNRDANLWRRRWCILAGDKLWLLRSKSEQSGRRRRG-RSHSYPLSLVPCKSKEVSRGAVPSHCFELHTGTRTHVFRAESRAKQVVWVNSLQRQARQAEEDSYISLAEHMVCDE 1296
EGVVIRV+ISGAH SFLHMRVFPSTTAGQVCRKIGE+LRQ EQ +Y LIA+YARPA + + G TG VAD G DE S GG R H+ S+RH+LHTFR EERLGE RLGLP P P + P + R G G++ R R S A GAA V R XXXXXXXXXXX A W+SRWIYR+ A AL+ DELQVEVSGSDTSEDE RAGW DL GLGQGHY GYL KKS D NLWRRRWCILA D+LWLLRSKSEQSGRRR G RSHS+ L+L P SHCFELH+ R H FRAESRAKQV WV +LQR ARQA EDSY+S+AEHMVCDE
Sbjct: 180 EGVVIRVLISGAHASFLHMRVFPSTTAGQVCRKIGEKLRQLPAEQNEYVLIAIYARPARNVSSLSDTGGGSTGPGHRHSAGVADRGATVGGDEVD-------------NYSAGYTAGGGRDXXXXXXXXXXXXXXXXXHQSSIRHILHTFRSEERLGEVRLGLPEPNSAGRP--QNPANSHDR-GARGDTDGPDRGRTDSFSTRTTAASPAAGGAADIDAALRAQGTIDNGGGGVRRVDEEETAGKLGVSRGNGXXXXXXXXXXXXXXXXRSGRAAQAGLMWRSRWIYRERTAPALDPDELQVEVSGSDTSEDERRAGWIDLRGLGQGHYCGYLQKKSRSDPNLWRRRWCILADDRLWLLRSKSEQSGRRRGGGRSHSFSLALAP------------SHCFELHSQNRVHTFRAESRAKQVAWVGTLQRHARQAAEDSYMSVAEHMVCDE 601
BLAST of mRNA_H-paniculata_contig2193.5791.1 vs. uniprot
Match: A0A835ZFB7_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB7_9STRA) HSP 1 Score: 107 bits (268), Expect = 3.000e-22 Identity = 60/169 (35.50%), Postives = 92/169 (54.44%), Query Frame = 1
Query: 802 RWIYRDSRASALEADELQVEVSGSDTSEDEAR--AGWTDLTGLGQGHYSGYLLKKSNRDANLWRRRWCILAGDKLWLLRSKSEQSGRRRRGRSHSYPLSLVPCKSKEVSRGAVPSHCFELHTGTRTHVFRAESRAKQVVWVNSLQRQARQAEEDSYISLAEHMVCDEVK 1302
RW ++DSR + L+ +E +SGS+ S+ E W DL +GQG S YL ++S D NLWRRRWC L G++L++L+ K + +++ + L E SR H E+H+ H RA++ A VW +L AR A E+ + +AEH++CDE +
Sbjct: 135 RWFFKDSRTAPLDFEEG---LSGSEASDGEGEDCCTWNDLAYVGQGDLSDYLYRQSQWDRNLWRRRWCTLTGERLYVLKQKPDLKKIGSGTIPNAFSVPLAGSTVLERSRNGASPHALEVHSTHAAHALRAQTPAAARVWAEALAEAARLATENGLLHVAEHIICDETR 300
BLAST of mRNA_H-paniculata_contig2193.5791.1 vs. uniprot
Match: A0A7R9U7P1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7P1_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.680e-20 Identity = 72/176 (40.91%), Postives = 97/176 (55.11%), Query Frame = 1
Query: 790 AWKSRWIYRDSRASALEADELQVEVSGSDTSEDEARAGWTDLTGLG------QGHYSGYLLKKSNRDANLWRRRWCILAGDKLWLLRSKSEQSGRRRRGRSHSYPLSLVPCKSKEVSRGAVPSHCFELHTGTRTHVFRAESRAKQVVWVNSLQRQARQAEEDSYISLAEHMVCDEV 1299
AW RW +++ + + L D SG D+S+DE W DL+ L G SG+LLK+S+RD N+WRRRWC+L DKLW LRS+S GRRRR RS PL + K +E ELHT + T+ FRA +R Q W+ L + + YI+LAE+M+ DE
Sbjct: 122 AWV-RWFWKEEQTTPLPLD--LGHASGIDSSDDERGFAWRDLSHLTTSSSDRDGICSGFLLKRSSRDPNVWRRRWCVLTEDKLWYLRSRS---GRRRR-RSPYVPLVNMRDKVREPEAKQRIPFGIELHTTSDTYFFRAYNRDDQSRWMQWLSKVTDVNTTNDYIALAEYMINDEA 290
BLAST of mRNA_H-paniculata_contig2193.5791.1 vs. uniprot
Match: A0A7S2Y1M2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1M2_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 9.440e-20 Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 1
Query: 805 WIYRDSRASALEADELQVEVSGSDTSEDEARAGWTDLTGLGQGHYSGYLLKKSNRDANLWRRRWCILAGDKLWLLRSKSEQSGRRRRGRSHSYPLSLVPCKSKEVSRGAVPS 1140
W+++D R + L+ E VSGS +SE+E A W DL LG+G YSG+LLK+SN+D NLWRRRWCIL DKLW LR + + ++ LSLV C ++V PS
Sbjct: 80 WVFKDVRGAPLDFRE----VSGSSSSEEERAAPWRDLAHLGEGDYSGWLLKRSNKDTNLWRRRWCILVSDKLWYLRHRHAHQ------QVYAPCLSLVRCSLRDVCPSNNPS 181
BLAST of mRNA_H-paniculata_contig2193.5791.1 vs. uniprot
Match: A0A7S2HEY4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HEY4_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.230e-19 Identity = 69/180 (38.33%), Postives = 102/180 (56.67%), Query Frame = 1
Query: 805 WIYRDSRASALEADELQVEVSGSDTSEDEARAGWT---DLTGLGQGHYS---GYLLKKSNRDANLWRRRWCILAGDKLWLLRSKSEQSGRRRRGRSHSYPLSLVPCKSKEVSRGAVPSHCFELHTGTRTHVFRA---ESRAKQVV-----WVNSLQRQARQAEEDSYISLAEHMVCDEVK 1302
W YRD R++ L+ D SGSD S+DEA A D++ L + + G+LLK+S+ D NLWR+R+CILAGDKLW +R + +S R R ++ + LV + E + + FEL T R FRA +R +Q+V W+ +L+RQ ++E+ +I LAEH+ CD K
Sbjct: 92 WYYRDHRSTPLDLD-----ASGSDESDDEATARTRAPQDMSHLSDDNCTRCAGFLLKRSHSDPNLWRKRFCILAGDKLWYMRRRPPRS---RGARMYASCIPLVTSRVNEPPKHLKLPYSFELQTVERPFYFRAFGRNARREQLVKVQRGWLMALERQINYSDENEFIKLAEHICCDSEK 263 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2193.5791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2193.5791.1 >prot_H-paniculata_contig2193.5791.1 ID=prot_H-paniculata_contig2193.5791.1|Name=mRNA_H-paniculata_contig2193.5791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=435bp MISGAHTSFLHMRVFPSTTAGQVCRKIGERLRQSQVEQADYCLIAVYARPback to top mRNA from alignment at H-paniculata_contig2193:698..12832- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2193.5791.1 ID=mRNA_H-paniculata_contig2193.5791.1|Name=mRNA_H-paniculata_contig2193.5791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12135bp|location=Sequence derived from alignment at H-paniculata_contig2193:698..12832- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2193:698..12832- >mRNA_H-paniculata_contig2193.5791.1 ID=mRNA_H-paniculata_contig2193.5791.1|Name=mRNA_H-paniculata_contig2193.5791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at H-paniculata_contig2193:698..12832- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |